P12644 (BMP4_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 154.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Bone morphogenetic protein 4 Short name=BMP-4 Alternative name(s): Bone morphogenetic protein 2B Short name=BMP-2B | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 408 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Induces cartilage and bone formation. Also act in mesoderm induction, tooth development, limb formation and fracture repair. Acts in concert with PTHLH/PTHRP to stimulate ductal outgrowth during embryonic mammary development and to inhibit hair follicle induction By similarity. |
| Subunit structure | Homodimer; disulfide-linked By similarity. Interacts with GREM2. Part of a complex consisting of TWSG1 and CHRD. Interacts with the serine proteases, HTRA1 and HTRA3; the interaction with either inhibits BMP4-mediated signaling. The HTRA protease activity is required for this inhibition By similarity. Interacts with SOSTDC1. Ref.5 |
| Subcellular location | |
| Tissue specificity | Expressed in the lung and lower levels seen in the kidney. Present also in normal and neoplastic prostate tissues, and prostate cancer cell lines. |
| Involvement in disease | Microphthalmia, syndromic, 6 (MCOPS6) [MIM:607932]: A disease characterized by microphthalmia/anophthalmia associated with facial, genital, skeletal, neurologic and endocrine anomalies. Microphthalmia is a disorder of eye formation, ranging from small size of a single eye to complete bilateral absence of ocular tissues (anophthalmia). In many cases, microphthalmia/anophthalmia occurs in association with syndromes that include non-ocular abnormalities. Non-syndromic orofacial cleft 11 (OFC11) [MIM:600625]: A birth defect consisting of cleft lips with or without cleft palate. Cleft lips are associated with cleft palate in two-third of cases. A cleft lip can occur on one or both sides and range in severity from a simple notch in the upper lip to a complete opening in the lip extending into the floor of the nostril and involving the upper gum. |
| Sequence similarities | Belongs to the TGF-beta family. |
Ontologies
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||
Molecule processing | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Signal peptide | 1 – 19 | 19 | Potential | ||||||||
| Propeptide | 20 – 292 | 273 | PRO_0000033856 | ||||||||
| Chain | 293 – 408 | 116 | Bone morphogenetic protein 4 | PRO_0000033857 | |||||||
Amino acid modifications | |||||||||||
| Glycosylation | 143 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 208 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 350 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 365 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Disulfide bond | 308 ↔ 373 | By similarity | |||||||||
| Disulfide bond | 337 ↔ 405 | By similarity | |||||||||
| Disulfide bond | 341 ↔ 407 | By similarity | |||||||||
| Disulfide bond | 372 | Interchain By similarity | |||||||||
Natural variations | |||||||||||
| Natural variant | 91 | 1 | S → C in OFC11; also found in renal hypodysplasia patients. Ref.6 Ref.8 Ref.9 | VAR_043531 | |||||||
| Natural variant | 93 | 1 | E → G in MCOPS6. Ref.7 | VAR_043532 | |||||||
| Natural variant | 102 | 1 | T → A. Ref.9 | VAR_058314 | |||||||
| Natural variant | 116 | 1 | T → S in a renal hypodysplasia patient. Ref.8 | VAR_043533 | |||||||
| Natural variant | 150 | 1 | N → K in a renal hypodysplasia patient. Ref.8 | VAR_043534 | |||||||
| Natural variant | 152 | 1 | V → A. Ref.2 Ref.3 Ref.6 Ref.9 Corresponds to variant rs17563 [ dbSNP | Ensembl ]. | VAR_016174 | |||||||
| Natural variant | 162 | 1 | R → Q in OFC11. Ref.9 | VAR_058315 | |||||||
| Natural variant | 168 | 1 | G → A. Ref.9 | VAR_058316 | |||||||
| Natural variant | 225 | 1 | T → A. Ref.6 | VAR_043535 | |||||||
| Natural variant | 226 | 1 | R → W. Ref.6 | VAR_043536 | |||||||
| Natural variant | 287 | 1 | R → H in OFC11. Ref.9 | VAR_058317 | |||||||
| Natural variant | 346 | 1 | A → V in OFC11. Ref.9 | VAR_058318 | |||||||
| Natural variant | 367 | 1 | S → T. Ref.6 | VAR_043537 | |||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Novel regulators of bone formation: molecular clones and activities." Wozney J.M., Rosen V., Celeste A.J., Mitsock L.M., Whitters M.J., Kriz R.W., Hewick R.M., Wang E.A. Science 242:1528-1534(1988) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA]. |
| [2] | "The human bone morphogenetic protein 4 (BMP-4) gene: molecular structure and transcriptional regulation." Shore E.M., Xu M., Shah P.B., Janoff H.B., Hahn G.V., Deardorff M.A., Sovinsky L., Spinner N.B., Zasloff M.A., Wozney J.M., Kaplan F.S. Calcif. Tissue Int. 63:221-229(1998) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], VARIANT ALA-152. |
| [3] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANT ALA-152. Tissue: Duodenum. |
| [4] | "Cloning and sequence of bone morphogenetic protein 4 (BMP-4) from a human placental cDNA library." Oida S., Iimura T., Maruoka Y., Takeda K., Sasaki S. DNA Seq. 5:273-275(1995) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 7-408. Tissue: Placenta. |
| [5] | "USAG-1: a bone morphogenetic protein antagonist abundantly expressed in the kidney." Yanagita M., Oka M., Watabe T., Iguchi H., Niida A., Takahashi S., Akiyama T., Miyazono K., Yanagisawa M., Sakurai T. Biochem. Biophys. Res. Commun. 316:490-500(2004) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH SOSTDC1. |
| [6] | "Evaluation of BMP4 and its specific inhibitor NOG as candidates in human neural tube defects (NTDs)." Felder B., Stegmann K., Schultealbert A., Geller F., Strehl E., Ermert A., Koch M.C. Eur. J. Hum. Genet. 10:753-756(2002) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS CYS-91; ALA-152; ALA-225; TRP-226 AND THR-367. |
| [7] | "Mutations in BMP4 cause eye, brain, and digit developmental anomalies: overlap between the BMP4 and hedgehog signaling pathways." Bakrania P., Efthymiou M., Klein J.C., Salt A., Bunyan D.J., Wyatt A., Ponting C.P., Martin A., Williams S., Lindley V., Gilmore J., Restori M., Robson A.G., Neveu M.M., Holder G.E., Collin J.R.O., Robinson D.O., Farndon P. Ragge N.K.Am. J. Hum. Genet. 82d:304-319(2008) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT MCOPS6 GLY-93. |
| [8] | "SIX2 and BMP4 mutations associate with anomalous kidney development." Weber S., Taylor J.C., Winyard P., Baker K.F., Sullivan-Brown J., Schild R., Knueppel T., Zurowska A.M., Caldas-Alfonso A., Litwin M., Emre S., Ghiggeri G.M., Bakkaloglu A., Mehls O., Antignac C., Schaefer F., Burdine R.D. J. Am. Soc. Nephrol. 19:891-903(2008) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS CYS-91; SER-116 AND LYS-150. |
| [9] | "Mutations in BMP4 are associated with subepithelial, microform, and overt cleft lip." Suzuki S., Marazita M.L., Cooper M.E., Miwa N., Hing A., Jugessur A., Natsume N., Shimozato K., Ohbayashi N., Suzuki Y., Niimi T., Minami K., Yamamoto M., Altannamar T.J., Erkhembaatar T., Furukawa H., Daack-Hirsch S., L'heureux J. Murray J.C.Am. J. Hum. Genet. 84:406-411(2009) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS OFC11 CYS-91; GLN-162; HIS-287 AND VAL-346, VARIANTS ALA-102; ALA-152 AND ALA-168. |
| + | Additional computationally mapped references. |
Web resources
| Wikipedia Bone morphogenetic protein 4 entry |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | M22490 mRNA. Translation: AAA51835.1. U43842 Genomic DNA. Translation: AAC72278.1. BC020546 mRNA. Translation: AAH20546.1. D30751 mRNA. Translation: BAA06410.1. |
| IPI | IPI00292640. |
| PIR | BMHU4. C37278. |
| RefSeq | NP_001193.2. NM_001202.3. NP_570911.2. NM_130850.2. NP_570912.2. NM_130851.2. |
| UniGene | Hs.68879. |
3D structure databases | |
| ProteinModelPortal | P12644. |
| ModBase | Search... |
Protein-protein interaction databases | |
| DIP | DIP-5795N. |
| IntAct | P12644. 2 interactions. |
| MINT | MINT-1184353. |
| STRING | 9606.ENSP00000245451. |
PTM databases | |
| PhosphoSite | P12644. |
Polymorphism databases | |
| DMDM | 115073. |
Proteomic databases | |
| PaxDb | P12644. |
| PRIDE | P12644. |
Protocols and materials databases | |
| DNASU | 652. |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000245451; ENSP00000245451; ENSG00000125378. ENST00000417573; ENSP00000394165; ENSG00000125378. ENST00000558984; ENSP00000454134; ENSG00000125378. ENST00000559087; ENSP00000453485; ENSG00000125378. |
| GeneID | 652. |
| KEGG | hsa:652. |
| UCSC | uc001xal.4. human. |
Organism-specific databases | |
| CTD | 652. |
| GeneCards | GC14M054416. |
| HGNC | HGNC:1071. BMP4. |
| HPA | CAB006863. |
| MIM | 112262. gene. 600625. phenotype. 607932. phenotype. |
| neXtProt | NX_P12644. |
| Orphanet | 264200. 14q22q23 microdeletion syndrome. 1991. Cleft lip with or without cleft palate. 139471. Microphthalmia with brain and digit anomalies. |
| PharmGKB | PA25381. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG243555. |
| HOGENOM | HOG000249478. |
| HOVERGEN | HBG004860. |
| InParanoid | P12644. |
| KO | K04662. |
| OMA | QGFHRIN. |
| OrthoDB | EOG4JT05K. |
| PhylomeDB | P12644. |
Enzyme and pathway databases | |
| Pathway_Interaction_DB | bmppathway. BMP receptor signaling. glypican_3pathway. Glypican 3 network. |
| Reactome | REACT_118779. Extracellular matrix organization. |
Gene expression databases | |
| ArrayExpress | P12644. |
| Bgee | P12644. |
| CleanEx | HS_BMP4. |
| Genevestigator | P12644. |
| GermOnline | ENSG00000125378. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR001839. TGF-b_C. IPR001111. TGF-b_N. IPR015615. TGF-beta-rel. IPR017948. TGFb_CS. [Graphical view] |
| PANTHER | PTHR11848. PTHR11848. 1 hit. |
| Pfam | PF00019. TGF_beta. 1 hit. PF00688. TGFb_propeptide. 1 hit. [Graphical view] |
| SMART | SM00204. TGFB. 1 hit. [Graphical view] |
| PROSITE | PS00250. TGF_BETA_1. 1 hit. PS51362. TGF_BETA_2. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| BindingDB | P12644. |
| ChEMBL | CHEMBL5350. |
| GenomeRNAi | 652. |
| NextBio | 2648. |
| SOURCE | Search... |
Entry information
| Entry name | BMP4_HUMAN | ||||||||
| Accession | Primary (citable) accession number: P12644 Secondary accession number(s): Q9UM80 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 14 Human chromosome 14: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
