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Protein

50S ribosomal protein L13, chloroplastic

Gene

RPL13

Organism
Spinacia oleracea (Spinach)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Component of the chloroplast ribosome (chloro-ribosome), a dedicated translation machinery responsible for the synthesis of chloroplast genome-encoded proteins, including proteins of the transcription and translation machinery and components of the photosynthetic apparatus.2 Publications

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L13, chloroplastic1 Publication
Alternative name(s):
CL13
Chloroplastic large ribosomal subunit protein uL13c1 Publication
Gene namesi
Name:RPL13
ORF Names:SOVF_093170
OrganismiSpinacia oleracea (Spinach)
Taxonomic identifieri3562 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaeCaryophyllalesChenopodiaceaeChenopodioideaeAnserineaeSpinacia
Proteomesi
  • UP000054095 Componenti: Unassembled WGS sequence

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 47Chloroplast1 PublicationAdd BLAST47
ChainiPRO_000003046148 – 25050S ribosomal protein L13, chloroplasticAdd BLAST203

Proteomic databases

PRIDEiP12629.

Interactioni

Subunit structurei

Component of the chloroplast large ribosomal subunit (LSU). Mature 70S chloroplast ribosomes of higher plants consist of a small (30S) and a large (50S) subunit. The 30S small subunit contains 1 molecule of ribosomal RNA (16S rRNA) and 24 different proteins. The 50S large subunit contains 3 rRNA molecules (23S, 5S and 4.5S rRNA) and 33 different proteins.2 Publications

Structurei

Secondary structure

1250
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi53 – 72Combined sources20
Beta strandi79 – 81Combined sources3
Helixi89 – 91Combined sources3
Beta strandi96 – 98Combined sources3
Helixi104 – 107Combined sources4
Helixi109 – 111Combined sources3
Beta strandi114 – 118Combined sources5
Helixi124 – 136Combined sources13
Turni137 – 139Combined sources3
Beta strandi152 – 156Combined sources5
Helixi167 – 170Combined sources4
Beta strandi172 – 176Combined sources5
Beta strandi183 – 187Combined sources5
Helixi188 – 194Combined sources7
Helixi197 – 205Combined sources9
Helixi212 – 218Combined sources7
Beta strandi221 – 223Combined sources3
Beta strandi225 – 227Combined sources3
Helixi232 – 234Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4V61electron microscopy9.40BL1-250[»]
5H1Selectron microscopy3.50L60-250[»]
5MLCelectron microscopy3.90L1-250[»]
5MMIelectron microscopy3.25K1-250[»]
5MMMelectron microscopy3.40K1-250[»]
5X8Pelectron microscopy3.40K54-250[»]
5X8Telectron microscopy3.30K54-250[»]
ProteinModelPortaliP12629.
SMRiP12629.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP12629.

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transit peptide

Family and domain databases

CDDicd00392. Ribosomal_L13. 1 hit.
Gene3Di3.90.1180.10. 1 hit.
HAMAPiMF_01366. Ribosomal_L13. 1 hit.
InterProiView protein in InterPro
IPR005822. Ribosomal_L13.
IPR005823. Ribosomal_L13_bac-type.
IPR023563. Ribosomal_L13_CS.
PANTHERiPTHR11545. PTHR11545. 1 hit.
PfamiView protein in Pfam
PF00572. Ribosomal_L13. 1 hit.
SUPFAMiSSF52161. SSF52161. 1 hit.
TIGRFAMsiTIGR01066. rplM_bact. 1 hit.
PROSITEiView protein in PROSITE
PS00783. RIBOSOMAL_L13. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P12629-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATMACASSL TFPSAQTQKS FFGTNVKQTP VLSFPRPTVA AAVAVSARKS
60 70 80 90 100
TSASTKCTEE WRQLKEAVKK EFAIPHVPLD QRWMFTLEEA TGPDIWNTTW
110 120 130 140 150
YPKSADHVPT DKKWYVVDAT DLILGRMAST IAIHIRGKNL ASYTPSVDMG
160 170 180 190 200
AFVIVVNADK VAVSGKKRTQ KLYRRHSGRP GGLKEETFDQ LQKRIPERII
210 220 230 240 250
EHAVRGMLPK GRLGRYLFNH LKVYKGAEHP HQAQQPIDLP LRDKRIRVEK
Length:250
Mass (Da):28,164
Last modified:October 1, 1989 - v1
Checksum:i0B8F157B7A948EA7
GO

Mass spectrometryi

Molecular mass is 23365.0 Da from positions 48 - 250. Determined by ESI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
J04461 mRNA. Translation: AAA34040.1.
KQ146763 Genomic DNA. Translation: KNA15999.1.
PIRiA32033.

Similar proteinsi

Entry informationi

Entry nameiRK13_SPIOL
AccessioniPrimary (citable) accession number: P12629
Secondary accession number(s): A0A0K9RAG3
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 1989
Last sequence update: October 1, 1989
Last modified: August 30, 2017
This is version 99 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families