P11831 (SRF_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 153.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Serum response factor Short name=SRF | ||
| Gene names |
| ||
| Organism | Homo sapiens (Human) [Reference proteome] | ||
| Taxonomic identifier | 9606 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 508 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | SRF is a transcription factor that binds to the serum response element (SRE), a short sequence of dyad symmetry located 300 bp to the 5' of the site of transcription initiation of some genes (such as FOS). Required for cardiac differentiation and maturation. |
| Subunit structure | Binds DNA as a multimer, probably a dimer. Interacts with MLLT7/FOXO4, NKX3A and SSRP1. Interacts with ARID2 and SRFBP1 By similarity. Forms complexes with ARID2, MYOCD, NKX2-5 and SRFBP1 By similarity. Forms a nuclear ternary complex with MKL1 and SCAI. Interacts with LPXN. Ref.9 Ref.11 Ref.13 |
| Subcellular location | |
| Post-translational modification | |
| Sequence similarities | Contains 1 MADS-box domain. |
Ontologies
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| MKL1 | Q969V6 | 2 | EBI-493034,EBI-493122 | |
| MKL2 | Q9ULH7 | 3 | EBI-493034,EBI-493007 | |
| MYOCD | Q8IZQ8 | 2 | EBI-493034,EBI-493384 |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||||||||||||
Molecule processing | |||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 508 | 508 | Serum response factor | PRO_0000199423 | |||||||||||||||||
Regions | |||||||||||||||||||||
| Domain | 141 – 201 | 61 | MADS-box | ||||||||||||||||||
| DNA binding | 133 – 222 | 90 | |||||||||||||||||||
| Region | 168 – 222 | 55 | Involved in dimerization | ||||||||||||||||||
| Compositional bias | 13 – 142 | 130 | Gly-rich | ||||||||||||||||||
| Compositional bias | 80 – 90 | 11 | Asp/Glu-rich (acidic) | ||||||||||||||||||
| Compositional bias | 242 – 258 | 17 | Asp/Glu-rich (acidic) | ||||||||||||||||||
Amino acid modifications | |||||||||||||||||||||
| Modified residue | 77 | 1 | Phosphoserine Ref.6 Ref.12 | ||||||||||||||||||
| Modified residue | 79 | 1 | Phosphoserine Ref.6 Ref.12 | ||||||||||||||||||
| Modified residue | 83 | 1 | Phosphoserine Ref.6 Ref.12 | ||||||||||||||||||
| Modified residue | 85 | 1 | Phosphoserine Ref.6 Ref.12 | ||||||||||||||||||
| Modified residue | 103 | 1 | Phosphoserine Ref.6 | ||||||||||||||||||
| Modified residue | 224 | 1 | Phosphoserine Ref.10 Ref.12 Ref.14 | ||||||||||||||||||
| Modified residue | 253 | 1 | Phosphoserine Ref.5 | ||||||||||||||||||
| Modified residue | 435 | 1 | Phosphoserine; by dsDNA kinase Ref.8 | ||||||||||||||||||
| Modified residue | 446 | 1 | Phosphoserine; by dsDNA kinase Ref.8 | ||||||||||||||||||
| Glycosylation | 277 | 1 | O-linked (GlcNAc) Ref.7 | CAR_000181 | |||||||||||||||||
| Glycosylation | 307 | 1 | O-linked (GlcNAc) Probable | ||||||||||||||||||
| Glycosylation | 309 | 1 | O-linked (GlcNAc) Probable | ||||||||||||||||||
| Glycosylation | 316 | 1 | O-linked (GlcNAc) Ref.7 | CAR_000196 | |||||||||||||||||
| Glycosylation | 383 | 1 | O-linked (GlcNAc) Probable | ||||||||||||||||||
Secondary structure | |||||||||||||||||||||
Helix Strand Turn | |||||||||||||||||||||
| Helix | 154 – 179 | 26 | |||||||||||||||||||
| Beta strand | 182 – 188 | 7 | |||||||||||||||||||
| Beta strand | 190 – 192 | 3 | |||||||||||||||||||
| Beta strand | 194 – 198 | 5 | |||||||||||||||||||
| Helix | 200 – 205 | 6 | |||||||||||||||||||
| Helix | 209 – 220 | 12 | |||||||||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Isolation and properties of cDNA clones encoding SRF, a transcription factor that binds to the c-fos serum response element." Norman C., Runswick M., Pollock R., Treisman R. Cell 55:989-1003(1988) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA], PARTIAL PROTEIN SEQUENCE. |
| [2] | "The DNA sequence and analysis of human chromosome 6." Mungall A.J., Palmer S.A., Sims S.K., Edwards C.A., Ashurst J.L., Wilming L., Jones M.C., Horton R., Hunt S.E., Scott C.E., Gilbert J.G.R., Clamp M.E., Bethel G., Milne S., Ainscough R., Almeida J.P., Ambrose K.D., Andrews T.D. Beck S.Nature 425:805-811(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [3] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [4] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Lung and Lymph. |
| [5] | "C-terminal phosphorylation of the serum-response factor." Janknecht R., Ernst W.H., Houthaeve T., Nordheim A. Eur. J. Biochem. 216:469-475(1993) [PubMed] [Europe PMC] [Abstract] Cited for: PROTEIN SEQUENCE OF 210-221 AND 253-264, PHOSPHORYLATION AT SER-253. |
| [6] | "Identification of multiple SRF N-terminal phosphorylation sites affecting DNA binding properties." Janknecht R., Hipskind R.A., Houthaeve T., Nordheim A., Stunnenberg H.G. EMBO J. 11:1045-1054(1992) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION AT SER-77; SER-79; SER-83; SER-85 AND SER-103. |
| [7] | "Localization of O-GlcNAc modification on the serum response transcription factor." Reason A.J., Morris H.R., Panico M., Marais R., Treisman R.H., Haltiwanger R.S., Hart G.W., Kelly W.G., Dell A. J. Biol. Chem. 267:16911-16921(1992) [PubMed] [Europe PMC] [Abstract] Cited for: GLYCOSYLATION AT SER-277; SER-307; SER-309; SER-316 AND SER-383. |
| [8] | "The carboxyl-terminal transactivation domain of human serum response factor contains DNA-activated protein kinase phosphorylation sites." Liu S.-H., Ma J.-T., Yueh A.Y., Lees-Miller S.P., Anderson C.W., Ng S.-Y. J. Biol. Chem. 268:21147-21154(1993) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION AT SER-435 AND SER-446. |
| [9] | "Phenotypic modulation of smooth muscle cells through interaction of Foxo4 and myocardin." Liu Z.-P., Wang Z., Yanagisawa H., Olson E.N. Dev. Cell 9:261-270(2005) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH MLLT7. |
| [10] | "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks." Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M. Cell 127:635-648(2006) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-224, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [11] | "The LIM protein leupaxin is enriched in smooth muscle and functions as an serum response factor cofactor to induce smooth muscle cell gene transcription." Sundberg-Smith L.J., DiMichele L.A., Sayers R.L., Mack C.P., Taylor J.M. Circ. Res. 102:1502-1511(2008) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH LPXN. |
| [12] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-77; SER-79; SER-83; SER-85 AND SER-224, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [13] | "SCAI acts as a suppressor of cancer cell invasion through the transcriptional control of beta1-integrin." Brandt D.T., Baarlink C., Kitzing T.M., Kremmer E., Ivaska J., Nollau P., Grosse R. Nat. Cell Biol. 11:557-568(2009) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH MKL1 AND SCAI, SUBCELLULAR LOCATION. |
| [14] | "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis." Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M. Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-224, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [15] | "System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation." Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J., Johansen P.T., Kratchmarova I., Kassem M., Mann M., Olsen J.V., Blagoev B. Sci. Signal. 4:RS3-RS3(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [16] | "Structure of serum response factor core bound to DNA." Pellegrini L., Tan S., Richmond T.J. Nature 376:490-498(1995) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (3.2 ANGSTROMS) OF 132-223. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | J03161 mRNA. Translation: AAA36647.1. AL133375, AL355385 Genomic DNA. Translation: CAI20207.1. AL355385, AL133375 Genomic DNA. Translation: CAI13785.1. CH471081 Genomic DNA. Translation: EAX04161.1. BC048211 mRNA. Translation: AAH48211.1. BC052572 mRNA. Translation: AAH52572.1. | ||||||||||||||||||||||||
| IPI | IPI00007879. | ||||||||||||||||||||||||
| PIR | A31637. | ||||||||||||||||||||||||
| RefSeq | NP_003122.1. NM_003131.2. | ||||||||||||||||||||||||
| UniGene | Hs.520140. | ||||||||||||||||||||||||
3D structure databases | |||||||||||||||||||||||||
| PDBe RCSB PDB PDBj |
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| ProteinModelPortal | P11831. | ||||||||||||||||||||||||
| ModBase | Search... | ||||||||||||||||||||||||
Protein-protein interaction databases | |||||||||||||||||||||||||
| DIP | DIP-49N. | ||||||||||||||||||||||||
| IntAct | P11831. 6 interactions. | ||||||||||||||||||||||||
| STRING | 9606.ENSP00000265354. | ||||||||||||||||||||||||
PTM databases | |||||||||||||||||||||||||
| GlycoSuiteDB | P11831. | ||||||||||||||||||||||||
| PhosphoSite | P11831. | ||||||||||||||||||||||||
Polymorphism databases | |||||||||||||||||||||||||
| DMDM | 134876. | ||||||||||||||||||||||||
Proteomic databases | |||||||||||||||||||||||||
| PaxDb | P11831. | ||||||||||||||||||||||||
| PRIDE | P11831. | ||||||||||||||||||||||||
Protocols and materials databases | |||||||||||||||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||||||||||||||
Genome annotation databases | |||||||||||||||||||||||||
| Ensembl | ENST00000265354; ENSP00000265354; ENSG00000112658. | ||||||||||||||||||||||||
| GeneID | 6722. | ||||||||||||||||||||||||
| KEGG | hsa:6722. | ||||||||||||||||||||||||
| UCSC | uc003oui.3. human. | ||||||||||||||||||||||||
Organism-specific databases | |||||||||||||||||||||||||
| CTD | 6722. | ||||||||||||||||||||||||
| GeneCards | GC06P043138. | ||||||||||||||||||||||||
| HGNC | HGNC:11291. SRF. | ||||||||||||||||||||||||
| HPA | CAB005416. HPA001819. | ||||||||||||||||||||||||
| MIM | 600589. gene. | ||||||||||||||||||||||||
| neXtProt | NX_P11831. | ||||||||||||||||||||||||
| PharmGKB | PA36116. | ||||||||||||||||||||||||
| GenAtlas | Search... | ||||||||||||||||||||||||
Phylogenomic databases | |||||||||||||||||||||||||
| eggNOG | COG5068. | ||||||||||||||||||||||||
| HOGENOM | HOG000012380. | ||||||||||||||||||||||||
| HOVERGEN | HBG014968. | ||||||||||||||||||||||||
| InParanoid | P11831. | ||||||||||||||||||||||||
| KO | K04378. | ||||||||||||||||||||||||
| OMA | MITSDTG. | ||||||||||||||||||||||||
| OrthoDB | EOG48KRCZ. | ||||||||||||||||||||||||
| PhylomeDB | P11831. | ||||||||||||||||||||||||
Enzyme and pathway databases | |||||||||||||||||||||||||
| Pathway_Interaction_DB | ar_pathway. Coregulation of Androgen receptor activity. p38_mk2pathway. p38 signaling mediated by MAPKAP kinases. pdgfrapathway. PDGFR-alpha signaling pathway. hdac_classii_pathway. Signaling events mediated by HDAC Class II. mapktrkpathway. Trk receptor signaling mediated by the MAPK pathway. | ||||||||||||||||||||||||
Gene expression databases | |||||||||||||||||||||||||
| ArrayExpress | P11831. | ||||||||||||||||||||||||
| Bgee | P11831. | ||||||||||||||||||||||||
| CleanEx | HS_SRF. | ||||||||||||||||||||||||
| Genevestigator | P11831. | ||||||||||||||||||||||||
| GermOnline | ENSG00000112658. Homo sapiens. | ||||||||||||||||||||||||
Family and domain databases | |||||||||||||||||||||||||
| InterPro | IPR002100. TF_MADSbox. [Graphical view] | ||||||||||||||||||||||||
| Pfam | PF00319. SRF-TF. 1 hit. [Graphical view] | ||||||||||||||||||||||||
| PRINTS | PR00404. MADSDOMAIN. | ||||||||||||||||||||||||
| SMART | SM00432. MADS. 1 hit. [Graphical view] | ||||||||||||||||||||||||
| SUPFAM | SSF55455. TF_MADSbox. 1 hit. | ||||||||||||||||||||||||
| PROSITE | PS00350. MADS_BOX_1. 1 hit. PS50066. MADS_BOX_2. 1 hit. [Graphical view] | ||||||||||||||||||||||||
| ProtoNet | Search... | ||||||||||||||||||||||||
Other | |||||||||||||||||||||||||
| EvolutionaryTrace | P11831. | ||||||||||||||||||||||||
| GenomeRNAi | 6722. | ||||||||||||||||||||||||
| NextBio | 26222. | ||||||||||||||||||||||||
| PMAP-CutDB | P11831. | ||||||||||||||||||||||||
| SOURCE | Search... | ||||||||||||||||||||||||
Entry information
| Entry name | SRF_HUMAN | ||||||||
| Accession | Primary (citable) accession number: P11831 Secondary accession number(s): Q5T648 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 6 Human chromosome 6: entries, gene names and cross-references to MIM |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with
