ID CAPSD_TBSVB Reviewed; 388 AA. AC P11795; Q9IW10; DT 01-OCT-1989, integrated into UniProtKB/Swiss-Prot. DT 05-OCT-2010, sequence version 2. DT 13-SEP-2023, entry version 93. DE RecName: Full=Capsid protein; DE AltName: Full=Coat protein; DE AltName: Full=p41; GN ORFNames=ORF2; OS Tomato bushy stunt virus (strain BS-3) (TBSV). OC Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; OC Tolivirales; Tombusviridae; Procedovirinae; Tombusvirus; OC Tombusvirus lycopersici. OX NCBI_TaxID=12146; OH NCBI_TaxID=4072; Capsicum annuum (Capsicum pepper). OH NCBI_TaxID=3749; Malus. OH NCBI_TaxID=3766; Pyrus (pears). OH NCBI_TaxID=4081; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). OH NCBI_TaxID=4111; Solanum melongena (Eggplant) (Aubergine). OH NCBI_TaxID=29777; Tolmiea menziesii. OH NCBI_TaxID=13305; Tulipa. RN [1] RP NUCLEOTIDE SEQUENCE [MRNA]. RA Galetzka D., Russo M., Rubino L., Krczal G.; RT "Molecular characterization of a tombusvirus associated with a disease of RT statice (Goniolimon tataricum (L.) Boiss.)."; RL J. Plant Pathol. 82:151-155(2000). RN [2] RP PROTEIN SEQUENCE OF 2-388. RX PubMed=6481803; DOI=10.1016/0022-2836(84)90045-7; RA Hopper P., Harrison S.C., Sauer R.T.; RT "Structure of tomato bushy stunt virus. V. Coat protein sequence RT determination and its structural implications."; RL J. Mol. Biol. 177:701-713(1984). RN [3] RP X-RAY CRYSTALLOGRAPHY (2.9 ANGSTROMS). RX PubMed=6644820; DOI=10.1016/s0022-2836(83)80314-3; RA Olson A.J., Bricogne G., Harrison S.C.; RT "Structure of tomato bushy stunt virus IV. The virus particle at 2.9-A RT resolution."; RL J. Mol. Biol. 171:61-93(1983). RN [4] RP X-RAY CRYSTALLOGRAPHY (2.9 ANGSTROMS). RX PubMed=19711552; DOI=10.1038/276368a0; RA Harrison S.C., Olson A.J., Schutt C.E., Winkler F.K., Bricogne G.; RT "Tomato bushy stunt virus at 2.9 A resolution."; RL Nature 276:368-373(1978). CC -!- FUNCTION: Capsid protein self-assembles to form an icosahedral capsid CC with a T=3 symmetry, about 32-35 nm in diameter, and consisting of 180 CC capsid proteins. CC -!- SUBUNIT: Homomultimer. {ECO:0000305}. CC -!- SUBCELLULAR LOCATION: Virion {ECO:0000305}. CC -!- PTM: The N-terminus is blocked. {ECO:0000305}. CC -!- SIMILARITY: Belongs to the icosahedral plant coat protein family. CC {ECO:0000305}. CC -!- WEB RESOURCE: Name=Virus Particle ExploreR db; Note=Icosahedral capsid CC structure; CC URL="https://viperdb.scripps.edu/Info_Page.php?VDB=2tbv"; CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AJ271328; CAB66390.1; -; mRNA. DR PIR; S07259; S07259. DR PDB; 2TBV; X-ray; 2.90 A; A/B/C=2-388. DR PDBsum; 2TBV; -. DR SMR; P11795; -. DR EvolutionaryTrace; P11795; -. DR GO; GO:0039617; C:T=3 icosahedral viral capsid; IEA:UniProtKB-KW. DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW. DR GO; GO:0005198; F:structural molecule activity; IEA:InterPro. DR Gene3D; 2.60.120.20; -; 1. DR InterPro; IPR000937; Capsid_prot_S-dom_vir. DR InterPro; IPR029053; Viral_coat. DR Pfam; PF00729; Viral_coat; 1. DR PRINTS; PR00233; ICOSAHEDRAL. DR SUPFAM; SSF88633; Positive stranded ssRNA viruses; 1. DR PROSITE; PS00555; ICOSAH_VIR_COAT_S; 1. PE 1: Evidence at protein level; KW 3D-structure; Capsid protein; Direct protein sequencing; RNA-binding; KW T=3 icosahedral capsid protein; Virion. FT INIT_MET 1 FT /note="Removed" FT /evidence="ECO:0000255" FT CHAIN 2..388 FT /note="Capsid protein" FT /id="PRO_0000222866" FT REGION 2..102 FT /note="R domain, interaction with RNA" FT REGION 57..63 FT /note="Involved in encapsidation" FT /evidence="ECO:0000250" FT REGION 103..264 FT /note="S domain, virion shell" FT REGION 265..388 FT /note="P domain, projecting" FT CONFLICT 14 FT /note="I -> V (in Ref. 2; AA sequence)" FT /evidence="ECO:0000305" FT CONFLICT 34..36 FT /note="HIS -> YIG (in Ref. 2; AA sequence)" FT /evidence="ECO:0000305" FT CONFLICT 107 FT /note="T -> TG (in Ref. 2; AA sequence)" FT /evidence="ECO:0000305" FT CONFLICT 131 FT /note="L -> S (in Ref. 2; AA sequence)" FT /evidence="ECO:0000305" FT CONFLICT 148 FT /note="I -> L (in Ref. 2; AA sequence)" FT /evidence="ECO:0000305" FT CONFLICT 163 FT /note="H -> D (in Ref. 2; AA sequence)" FT /evidence="ECO:0000305" FT CONFLICT 249..250 FT /note="TN -> AD (in Ref. 2; AA sequence)" FT /evidence="ECO:0000305" FT CONFLICT 254..259 FT /note="DVFISY -> ELFLAR (in Ref. 2; AA sequence)" FT /evidence="ECO:0000305" FT CONFLICT 275..276 FT /note="TR -> SK (in Ref. 2; AA sequence)" FT /evidence="ECO:0000305" FT CONFLICT 308 FT /note="V -> A (in Ref. 2; AA sequence)" FT /evidence="ECO:0000305" FT CONFLICT 348 FT /note="A -> D (in Ref. 2; AA sequence)" FT /evidence="ECO:0000305" FT CONFLICT 366..380 FT /note="TTGISSATVNVVRGT -> VSGVAAGILLVGRA (in Ref. 2; AA FT sequence)" FT /evidence="ECO:0000305" FT STRAND 95..97 FT /evidence="ECO:0007829|PDB:2TBV" FT STRAND 109..116 FT /evidence="ECO:0007829|PDB:2TBV" FT STRAND 119..123 FT /evidence="ECO:0007829|PDB:2TBV" FT TURN 124..126 FT /evidence="ECO:0007829|PDB:2TBV" FT STRAND 134..136 FT /evidence="ECO:0007829|PDB:2TBV" FT HELIX 145..147 FT /evidence="ECO:0007829|PDB:2TBV" FT TURN 148..150 FT /evidence="ECO:0007829|PDB:2TBV" FT STRAND 151..168 FT /evidence="ECO:0007829|PDB:2TBV" FT HELIX 192..195 FT /evidence="ECO:0007829|PDB:2TBV" FT STRAND 206..208 FT /evidence="ECO:0007829|PDB:2TBV" FT STRAND 210..213 FT /evidence="ECO:0007829|PDB:2TBV" FT STRAND 224..226 FT /evidence="ECO:0007829|PDB:2TBV" FT TURN 231..234 FT /evidence="ECO:0007829|PDB:2TBV" FT STRAND 240..245 FT /evidence="ECO:0007829|PDB:2TBV" FT STRAND 247..249 FT /evidence="ECO:0007829|PDB:2TBV" FT STRAND 251..263 FT /evidence="ECO:0007829|PDB:2TBV" FT STRAND 272..276 FT /evidence="ECO:0007829|PDB:2TBV" FT STRAND 280..283 FT /evidence="ECO:0007829|PDB:2TBV" FT STRAND 292..294 FT /evidence="ECO:0007829|PDB:2TBV" FT STRAND 304..308 FT /evidence="ECO:0007829|PDB:2TBV" FT STRAND 310..319 FT /evidence="ECO:0007829|PDB:2TBV" FT STRAND 325..331 FT /evidence="ECO:0007829|PDB:2TBV" FT STRAND 333..340 FT /evidence="ECO:0007829|PDB:2TBV" FT STRAND 343..345 FT /evidence="ECO:0007829|PDB:2TBV" FT STRAND 347..355 FT /evidence="ECO:0007829|PDB:2TBV" FT STRAND 360..365 FT /evidence="ECO:0007829|PDB:2TBV" FT STRAND 371..376 FT /evidence="ECO:0007829|PDB:2TBV" SQ SEQUENCE 388 AA; 40911 MW; 008DF490F253B79E CRC64; MAMTTRNNNN VLAISKKQLG VLAASAAVGA LRNHISESSP ALLQSAVGLG KKALNKVRNR RKQGNQQIIT HVGGVGGSIM APVAVSRQLV GSKPKFTGRT SGSVTVTHRE YLTQVNNSSG FVVNGGIVGN LLQLNPSNGT LFSWLPAIAS NFDQYSFNSV VLHYVPLCGT TEVGRVALYF DKDSQDPEPA DRVELANFGV LKETAPWAEA MLRIPTDKVK RYCNDSATVD QKLIDLGQLG IATYGGAGTN AVGDVFISYS VTLYFPQPTN TLLSTRRLDL TGSLADATGP GYLVLTRTPT VLTHTFRVTG TFNLSGGLRC LTSLTLGATG AVVINDILAI DNVGTASAYF LNCTVSSLPA TVTFTTTGIS SATVNVVRGT RANVVNLL //