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P11795 (CAPSD_TBSVB) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 71. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Capsid protein
Alternative name(s):
Coat protein
p41
Gene names
ORF Names:ORF2
OrganismTomato bushy stunt virus (strain BS-3) (TBSV)
Taxonomic identifier12146 [NCBI]
Taxonomic lineageVirusesssRNA positive-strand viruses, no DNA stageTombusviridaeTombusvirus
Virus hostCapsicum annuum (Bell pepper) [TaxID: 4072]
Malus [TaxID: 3749]
Pyrus (pears) [TaxID: 3766]
Solanum lycopersicum (Tomato) (Lycopersicon esculentum) [TaxID: 4081]
Solanum melongena (Eggplant) (Aubergine) [TaxID: 4111]
Tolmiea menziesii [TaxID: 29777]
Tulipa [TaxID: 13305]

Protein attributes

Sequence length388 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 32-35 nm in diameter, and consisting of 180 capsid proteins.

Subunit structure

Homomultimer Potential.

Subcellular location

Virion Potential.

Post-translational modification

The N-terminus is blocked Probable.

Sequence similarities

Belongs to the icosahedral plant coat protein family.

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Initiator methionine11Removed Potential
Chain2 – 388387Capsid protein
PRO_0000222866

Regions

Region2 – 102101R domain, interaction with RNA
Region57 – 637Involved in encapsidation By similarity
Region103 – 264162S domain, virion shell
Region265 – 388124P domain, projecting
Compositional bias7 – 104Poly-Asn

Experimental info

Sequence conflict141I → V AA sequence Ref.2
Sequence conflict34 – 363HIS → YIG AA sequence Ref.2
Sequence conflict1071T → TG AA sequence Ref.2
Sequence conflict1311L → S AA sequence Ref.2
Sequence conflict1481I → L AA sequence Ref.2
Sequence conflict1631H → D AA sequence Ref.2
Sequence conflict249 – 2502TN → AD AA sequence Ref.2
Sequence conflict254 – 2596DVFISY → ELFLAR AA sequence Ref.2
Sequence conflict275 – 2762TR → SK AA sequence Ref.2
Sequence conflict3081V → A AA sequence Ref.2
Sequence conflict3481A → D AA sequence Ref.2
Sequence conflict366 – 38015TTGIS…VVRGT → VSGVAAGILLVGRA AA sequence Ref.2

Secondary structure

.................................................. 388
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P11795 [UniParc].

Last modified October 5, 2010. Version 2.
Checksum: 008DF490F253B79E

FASTA38840,911
        10         20         30         40         50         60 
MAMTTRNNNN VLAISKKQLG VLAASAAVGA LRNHISESSP ALLQSAVGLG KKALNKVRNR 

        70         80         90        100        110        120 
RKQGNQQIIT HVGGVGGSIM APVAVSRQLV GSKPKFTGRT SGSVTVTHRE YLTQVNNSSG 

       130        140        150        160        170        180 
FVVNGGIVGN LLQLNPSNGT LFSWLPAIAS NFDQYSFNSV VLHYVPLCGT TEVGRVALYF 

       190        200        210        220        230        240 
DKDSQDPEPA DRVELANFGV LKETAPWAEA MLRIPTDKVK RYCNDSATVD QKLIDLGQLG 

       250        260        270        280        290        300 
IATYGGAGTN AVGDVFISYS VTLYFPQPTN TLLSTRRLDL TGSLADATGP GYLVLTRTPT 

       310        320        330        340        350        360 
VLTHTFRVTG TFNLSGGLRC LTSLTLGATG AVVINDILAI DNVGTASAYF LNCTVSSLPA 

       370        380 
TVTFTTTGIS SATVNVVRGT RANVVNLL 

« Hide

References

[1]"Molecular characterization of a tombusvirus associated with a disease of statice (Goniolimon tataricum (L.) Boiss.)."
Galetzka D., Russo M., Rubino L., Krczal G.
J. Plant Pathol. 82:151-155(2000)
Cited for: NUCLEOTIDE SEQUENCE [MRNA].
[2]"Structure of tomato bushy stunt virus. V. Coat protein sequence determination and its structural implications."
Hopper P., Harrison S.C., Sauer R.T.
J. Mol. Biol. 177:701-713(1984) [PubMed] [Europe PMC] [Abstract]
Cited for: PROTEIN SEQUENCE OF 2-388.
[3]"Structure of tomato bushy stunt virus IV. The virus particle at 2.9-A resolution."
Olson A.J., Bricogne G., Harrison S.C.
J. Mol. Biol. 171:61-93(1983) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.9 ANGSTROMS).
[4]"Tomato bushy stunt virus at 2.9 A resolution."
Harrison S.C., Olson A.J., Schutt C.E., Winkler F.K., Bricogne G.
Nature 276:368-373(1978) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.9 ANGSTROMS).

Web resources

Virus Particle ExploreR db

Icosahedral capsid structure

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AJ271328 mRNA. Translation: CAB66390.1.
PIRS07259.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
2TBVX-ray2.90A/B/C2-388[»]
ProteinModelPortalP11795.
SMRP11795. Positions 68-388.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

Gene3D2.60.120.20. 1 hit.
InterProIPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view]
PfamPF00729. Viral_coat. 1 hit.
[Graphical view]
PRINTSPR00233. ICOSAHEDRAL.
PROSITEPS00555. ICOSAH_VIR_COAT_S. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceP11795.

Entry information

Entry nameCAPSD_TBSVB
AccessionPrimary (citable) accession number: P11795
Secondary accession number(s): Q9IW10
Entry history
Integrated into UniProtKB/Swiss-Prot: October 1, 1989
Last sequence update: October 5, 2010
Last modified: July 9, 2014
This is version 71 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

PDB cross-references

Index of Protein Data Bank (PDB) cross-references