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Protein

Ran GTPase-activating protein 1

Gene

RNA1

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

GTPase activator for the nuclear Ras-related regulatory protein GSP1 (Ran), converting it to the putatively inactive GDP-bound state.

GO - Molecular functioni

  1. GTPase activator activity Source: SGD

GO - Biological processi

  1. chromatin silencing at telomere Source: SGD
  2. positive regulation of GTPase activity Source: GOC
  3. protein import into nucleus Source: SGD
  4. ribosomal subunit export from nucleus Source: SGD
  5. RNA import into nucleus Source: SGD
  6. rRNA export from nucleus Source: SGD
  7. tRNA export from nucleus Source: SGD
Complete GO annotation...

Keywords - Molecular functioni

GTPase activation

Enzyme and pathway databases

BioCyciYEAST:G3O-32916-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ran GTPase-activating protein 1
Alternative name(s):
Protein involved in RNA production/processing
Gene namesi
Name:RNA1
Ordered Locus Names:YMR235C
ORF Names:YM9959.17C
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
ProteomesiUP000002311 Componenti: Chromosome XIII

Organism-specific databases

CYGDiYMR235c.
EuPathDBiFungiDB:YMR235C.
SGDiS000004848. RNA1.

Subcellular locationi

GO - Cellular componenti

  1. cytosol Source: SGD
  2. nucleus Source: SGD
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

Pathology & Biotechi

Disruption phenotypei

Causes conditional lethality. Strains bearing this mutation do not grow at temperatures exceeding 30 degrees Celsius.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 407407Ran GTPase-activating protein 1PRO_0000056742Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei360 – 3601Phosphoserine2 Publications

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiP11745.
PaxDbiP11745.
PeptideAtlasiP11745.

Expressioni

Gene expression databases

GenevestigatoriP11745.

Interactioni

Protein-protein interaction databases

BioGridi35413. 148 interactions.
DIPiDIP-2509N.
IntActiP11745. 7 interactions.
MINTiMINT-558123.
STRINGi4932.YMR235C.

Structurei

3D structure databases

ProteinModelPortaliP11745.
SMRiP11745. Positions 16-359.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati11 – 3929LRR 1Add
BLAST
Repeati40 – 6728LRR 2Add
BLAST
Repeati68 – 10134LRR 3Add
BLAST
Repeati102 – 13332LRR 4Add
BLAST
Repeati134 – 16633LRR 5Add
BLAST
Repeati167 – 19731LRR 6Add
BLAST
Repeati198 – 22629LRR 7Add
BLAST
Repeati227 – 25630LRR 8Add
BLAST
Repeati257 – 28529LRR 9Add
BLAST
Repeati286 – 31530LRR 10Add
BLAST
Repeati316 – 34631LRR 11Add
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi348 – 37528Asp/Glu-rich (acidic)Add
BLAST

Sequence similaritiesi

Belongs to the RNA1 family.Curated
Contains 11 LRR (leucine-rich) repeats.Curated

Keywords - Domaini

Leucine-rich repeat, Repeat

Phylogenomic databases

eggNOGiCOG5238.
GeneTreeiENSGT00440000039203.
HOGENOMiHOG000195026.
InParanoidiP11745.
KOiK14319.
OMAiLELQWND.
OrthoDBiEOG71ZPB0.

Family and domain databases

InterProiIPR027038. RanGap.
[Graphical view]
PANTHERiPTHR24113. PTHR24113. 1 hit.

Sequencei

Sequence statusi: Complete.

P11745-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATLHFVPQH EEEQVYSISG KALKLTTSDD IKPYLEELAA LKTCTKLDLS
60 70 80 90 100
GNTIGTEASE ALAKCIAENT QVRESLVEVN FADLYTSRLV DEVVDSLKFL
110 120 130 140 150
LPVLLKCPHL EIVNLSDNAF GLRTIELLED YIAHAVNIKH LILSNNGMGP
160 170 180 190 200
FAGERIGKAL FHLAQNKKAA SKPFLETFIC GRNRLENGSA VYLALGLKSH
210 220 230 240 250
SEGLKVVKLY QNGIRPKGVA TLIHYGLQYL KNLEILDLQD NTFTKHASLI
260 270 280 290 300
LAKALPTWKD SLFELNLNDC LLKTAGSDEV FKVFTEVKFP NLHVLKFEYN
310 320 330 340 350
EMAQETIEVS FLPAMEKGNL PELEKLEING NRLDEDSDAL DLLQSKFDDL
360 370 380 390 400
EVDDFEEVDS EDEEGEDEED EDEDEKLEEI ETERLEKELL EVQVDDLAER

LAETEIK
Length:407
Mass (Da):45,816
Last modified:April 1, 1990 - v2
Checksum:iD77029B6783FFF09
GO

Sequence cautioni

The sequence CAA35248.1 differs from that shown. Reason: Frameshift at positions 185 and 203. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti42 – 421K → E in CAA35248 (Ref. 2) Curated
Sequence conflicti222 – 2221L → S in CAA40449 (Ref. 5) Curated

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti17 – 171S → F in mutant RNA1-1.
Natural varianti194 – 1941A → V in mutant RNA1-1.

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M27143 Genomic DNA. Translation: AAA34985.1.
M27142 Genomic DNA. Translation: AAA34983.1.
X17376 Genomic DNA. Translation: CAA35248.1. Frameshift.
Z49939 Genomic DNA. Translation: CAA90206.1.
X57160 Genomic DNA. Translation: CAA40449.1.
BK006946 Genomic DNA. Translation: DAA10135.1.
PIRiA32492. BVBYN1.
RefSeqiNP_013962.1. NM_001182742.1.

Genome annotation databases

EnsemblFungiiYMR235C; YMR235C; YMR235C.
GeneIDi855275.
KEGGisce:YMR235C.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M27143 Genomic DNA. Translation: AAA34985.1.
M27142 Genomic DNA. Translation: AAA34983.1.
X17376 Genomic DNA. Translation: CAA35248.1. Frameshift.
Z49939 Genomic DNA. Translation: CAA90206.1.
X57160 Genomic DNA. Translation: CAA40449.1.
BK006946 Genomic DNA. Translation: DAA10135.1.
PIRiA32492. BVBYN1.
RefSeqiNP_013962.1. NM_001182742.1.

3D structure databases

ProteinModelPortaliP11745.
SMRiP11745. Positions 16-359.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi35413. 148 interactions.
DIPiDIP-2509N.
IntActiP11745. 7 interactions.
MINTiMINT-558123.
STRINGi4932.YMR235C.

Proteomic databases

MaxQBiP11745.
PaxDbiP11745.
PeptideAtlasiP11745.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiYMR235C; YMR235C; YMR235C.
GeneIDi855275.
KEGGisce:YMR235C.

Organism-specific databases

CYGDiYMR235c.
EuPathDBiFungiDB:YMR235C.
SGDiS000004848. RNA1.

Phylogenomic databases

eggNOGiCOG5238.
GeneTreeiENSGT00440000039203.
HOGENOMiHOG000195026.
InParanoidiP11745.
KOiK14319.
OMAiLELQWND.
OrthoDBiEOG71ZPB0.

Enzyme and pathway databases

BioCyciYEAST:G3O-32916-MONOMER.

Miscellaneous databases

NextBioi978897.
PROiP11745.

Gene expression databases

GenevestigatoriP11745.

Family and domain databases

InterProiIPR027038. RanGap.
[Graphical view]
PANTHERiPTHR24113. PTHR24113. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Structural and functional analyses of Saccharomyces cerevisiae wild-type and mutant RNA1 genes."
    Traglia H.M., Atkinson N.S., Hopper A.K.
    Mol. Cell. Biol. 9:2989-2999(1989) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], DISRUPTION PHENOTYPE.
  2. Koh S.S., Young S.R., Young H.S., Hyen S.K.
    Submitted (DEC-1989) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: SL560-3A.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  4. Cited for: GENOME REANNOTATION.
    Strain: ATCC 204508 / S288c.
  5. Crouch R.J.
    Submitted (JAN-1991) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 188-407.
    Strain: ATCC 204510 / AB320.
  6. "The yeast RNA1 protein, necessary for RNA processing, is homologous to the human ribonuclease/angiogenin inhibitor (RAI)."
    Schneider R., Schweiger M.
    Mol. Gen. Genet. 233:315-318(1992) [PubMed] [Europe PMC] [Abstract]
    Cited for: DOMAINS LEUCINE-RICH REPEATS.
  7. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
  8. "Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae."
    Li X., Gerber S.A., Rudner A.D., Beausoleil S.A., Haas W., Villen J., Elias J.E., Gygi S.P.
    J. Proteome Res. 6:1190-1197(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-360, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Strain: ADR376.
  9. "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution."
    Holt L.J., Tuch B.B., Villen J., Johnson A.D., Gygi S.P., Morgan D.O.
    Science 325:1682-1686(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-360, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiRNA1_YEAST
AccessioniPrimary (citable) accession number: P11745
Secondary accession number(s): D6W061
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1989
Last sequence update: April 1, 1990
Last modified: April 29, 2015
This is version 148 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 52200 molecules/cell in log phase SD medium.1 Publication

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  3. Yeast chromosome XIII
    Yeast (Saccharomyces cerevisiae) chromosome XIII: entries and gene names

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.