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P11689

- CAPSD_TBSVC

UniProt

P11689 - CAPSD_TBSVC

Protein

Capsid protein

Gene

ORF2

Organism
Tomato bushy stunt virus (strain Cherry) (TBSV)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 65 (01 Oct 2014)
      Sequence version 1 (01 Oct 1989)
      Previous versions | rss
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    Functioni

    Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 32-35 nm in diameter, and consisting of 180 capsid proteins.

    GO - Molecular functioni

    1. RNA binding Source: UniProtKB-KW
    2. structural molecule activity Source: InterPro

    Keywords - Ligandi

    RNA-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Capsid protein
    Alternative name(s):
    Coat protein
    p41
    Gene namesi
    ORF Names:ORF2
    OrganismiTomato bushy stunt virus (strain Cherry) (TBSV)
    Taxonomic identifieri12147 [NCBI]
    Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageTombusviridaeTombusvirus
    Virus hostiCapsicum annuum (Bell pepper) [TaxID: 4072]
    Malus [TaxID: 3749]
    Pyrus (pears) [TaxID: 3766]
    Solanum lycopersicum (Tomato) (Lycopersicon esculentum) [TaxID: 4081]
    Solanum melongena (Eggplant) (Aubergine) [TaxID: 4111]
    Tolmiea menziesii [TaxID: 29777]
    Tulipa [TaxID: 13305]
    ProteomesiUP000001666: Genome

    Subcellular locationi

    Virion Curated

    GO - Cellular componenti

    1. T=3 icosahedral viral capsid Source: UniProtKB-KW

    Keywords - Cellular componenti

    Capsid protein, T=3 icosahedral capsid protein, Virion

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 388388Capsid proteinPRO_0000222867Add
    BLAST

    Interactioni

    Subunit structurei

    Homomultimer.Curated

    Structurei

    3D structure databases

    ProteinModelPortaliP11689.
    SMRiP11689. Positions 68-388.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni1 – 102102R domain, interaction with RNAAdd
    BLAST
    Regioni56 – 616Involved in encapsidationBy similarity
    Regioni103 – 264162S domain, virion shellAdd
    BLAST
    Regioni265 – 388124P domain, projectingAdd
    BLAST

    Sequence similaritiesi

    Family and domain databases

    Gene3Di2.60.120.20. 1 hit.
    InterProiIPR000937. Capsid_prot_S-dom_vir.
    IPR029053. Viral_coat.
    [Graphical view]
    PfamiPF00729. Viral_coat. 1 hit.
    [Graphical view]
    PRINTSiPR00233. ICOSAHEDRAL.
    PROSITEiPS00555. ICOSAH_VIR_COAT_S. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P11689-1 [UniParc]FASTAAdd to Basket

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    MAMVKRNNNT GMIPVSTKQL LALGAAAGAT ALQGFVKNNG MAIVEGAVDL    50
    TKRAYKAVRR RGGKKQQMIN HVGGTGGAIM APVAVTRQLV GSKPKFTGRT 100
    SGSVTVTHRE YLSQVNNSTG FQVNGGIVGN LLQLNPLNGT LFSWLPAIAS 150
    NFDQYTFNSV VLHYVPLCST TEVGRVAIYF DKDSEDPEPA DRVELANYSV 200
    LKETAPWAEA MLRVPTDKIK RFCDDSSTSD HKLIDLGQLG IATYGGAGTN 250
    AVGDIFISYS VTLYFPQPTN TLLSTRRLDL AGALVTASGP GYLLVSRTAT 300
    VLTMTFRATG TFVISGTYRC LTATTLGLAG GVNVNSITVV DNIGTDSAFF 350
    INCTVSNLPS VVTFTSTGIT SATVHCVRAT RQNDVSLI 388
    Length:388
    Mass (Da):41,151
    Last modified:October 1, 1989 - v1
    Checksum:i55C94E5C3C445A69
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    M21958 Genomic RNA. Translation: AAB02536.1.
    PIRiJA0114. VCVGTB.
    RefSeqiNP_062899.1. NC_001554.1.

    Genome annotation databases

    GeneIDi1493953.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    M21958 Genomic RNA. Translation: AAB02536.1 .
    PIRi JA0114. VCVGTB.
    RefSeqi NP_062899.1. NC_001554.1.

    3D structure databases

    ProteinModelPortali P11689.
    SMRi P11689. Positions 68-388.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 1493953.

    Family and domain databases

    Gene3Di 2.60.120.20. 1 hit.
    InterProi IPR000937. Capsid_prot_S-dom_vir.
    IPR029053. Viral_coat.
    [Graphical view ]
    Pfami PF00729. Viral_coat. 1 hit.
    [Graphical view ]
    PRINTSi PR00233. ICOSAHEDRAL.
    PROSITEi PS00555. ICOSAH_VIR_COAT_S. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Organization of tomato bushy stunt virus genome: characterization of the coat protein gene and the 3' terminus."
      Hillman B.I., Hearne P.Q., Rochon D., Morris T.J.
      Virology 169:42-50(1989) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
    2. "The complete genome structure and synthesis of infectious RNA from clones of tomato bushy stunt virus."
      Hearne P.Q., Knorr D.A., Hillman B.I., Morris T.J.
      Virology 177:141-151(1990) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

    Entry informationi

    Entry nameiCAPSD_TBSVC
    AccessioniPrimary (citable) accession number: P11689
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: October 1, 1989
    Last sequence update: October 1, 1989
    Last modified: October 1, 2014
    This is version 65 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programViral Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3