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Protein

Capsid protein

Gene

ORF2

Organism
Tomato bushy stunt virus (strain Cherry) (TBSV)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 32-35 nm in diameter, and consisting of 180 capsid proteins.

GO - Molecular functioni

  1. RNA binding Source: UniProtKB-KW
  2. structural molecule activity Source: InterPro
Complete GO annotation...

Keywords - Ligandi

RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Capsid protein
Alternative name(s):
Coat protein
p41
Gene namesi
ORF Names:ORF2
OrganismiTomato bushy stunt virus (strain Cherry) (TBSV)
Taxonomic identifieri12147 [NCBI]
Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageTombusviridaeTombusvirus
Virus hostiCapsicum annuum (Bell pepper) [TaxID: 4072]
Malus [TaxID: 3749]
Pyrus (pears) [TaxID: 3766]
Solanum lycopersicum (Tomato) (Lycopersicon esculentum) [TaxID: 4081]
Solanum melongena (Eggplant) (Aubergine) [TaxID: 4111]
Tolmiea menziesii [TaxID: 29777]
Tulipa [TaxID: 13305]
ProteomesiUP000001666: Genome

Subcellular locationi

Virion Curated

GO - Cellular componenti

  1. T=3 icosahedral viral capsid Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Capsid protein, T=3 icosahedral capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 388388Capsid proteinPRO_0000222867Add
BLAST

Interactioni

Subunit structurei

Homomultimer.Curated

Structurei

3D structure databases

ProteinModelPortaliP11689.
SMRiP11689. Positions 68-388.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni1 – 102102R domain, interaction with RNAAdd
BLAST
Regioni56 – 616Involved in encapsidationBy similarity
Regioni103 – 264162S domain, virion shellAdd
BLAST
Regioni265 – 388124P domain, projectingAdd
BLAST

Sequence similaritiesi

Family and domain databases

Gene3Di2.60.120.20. 1 hit.
InterProiIPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view]
PfamiPF00729. Viral_coat. 1 hit.
[Graphical view]
PRINTSiPR00233. ICOSAHEDRAL.
PROSITEiPS00555. ICOSAH_VIR_COAT_S. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P11689-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAMVKRNNNT GMIPVSTKQL LALGAAAGAT ALQGFVKNNG MAIVEGAVDL
60 70 80 90 100
TKRAYKAVRR RGGKKQQMIN HVGGTGGAIM APVAVTRQLV GSKPKFTGRT
110 120 130 140 150
SGSVTVTHRE YLSQVNNSTG FQVNGGIVGN LLQLNPLNGT LFSWLPAIAS
160 170 180 190 200
NFDQYTFNSV VLHYVPLCST TEVGRVAIYF DKDSEDPEPA DRVELANYSV
210 220 230 240 250
LKETAPWAEA MLRVPTDKIK RFCDDSSTSD HKLIDLGQLG IATYGGAGTN
260 270 280 290 300
AVGDIFISYS VTLYFPQPTN TLLSTRRLDL AGALVTASGP GYLLVSRTAT
310 320 330 340 350
VLTMTFRATG TFVISGTYRC LTATTLGLAG GVNVNSITVV DNIGTDSAFF
360 370 380
INCTVSNLPS VVTFTSTGIT SATVHCVRAT RQNDVSLI
Length:388
Mass (Da):41,151
Last modified:October 1, 1989 - v1
Checksum:i55C94E5C3C445A69
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M21958 Genomic RNA. Translation: AAB02536.1.
PIRiJA0114. VCVGTB.
RefSeqiNP_062899.1. NC_001554.1.

Genome annotation databases

GeneIDi1493953.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M21958 Genomic RNA. Translation: AAB02536.1.
PIRiJA0114. VCVGTB.
RefSeqiNP_062899.1. NC_001554.1.

3D structure databases

ProteinModelPortaliP11689.
SMRiP11689. Positions 68-388.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi1493953.

Family and domain databases

Gene3Di2.60.120.20. 1 hit.
InterProiIPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view]
PfamiPF00729. Viral_coat. 1 hit.
[Graphical view]
PRINTSiPR00233. ICOSAHEDRAL.
PROSITEiPS00555. ICOSAH_VIR_COAT_S. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Organization of tomato bushy stunt virus genome: characterization of the coat protein gene and the 3' terminus."
    Hillman B.I., Hearne P.Q., Rochon D., Morris T.J.
    Virology 169:42-50(1989) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
  2. "The complete genome structure and synthesis of infectious RNA from clones of tomato bushy stunt virus."
    Hearne P.Q., Knorr D.A., Hillman B.I., Morris T.J.
    Virology 177:141-151(1990) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Entry informationi

Entry nameiCAPSD_TBSVC
AccessioniPrimary (citable) accession number: P11689
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1989
Last sequence update: October 1, 1989
Last modified: January 7, 2015
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.