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P11689 (CAPSD_TBSVC) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 64. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Capsid protein
Alternative name(s):
Coat protein
p41
Gene names
ORF Names:ORF2
OrganismTomato bushy stunt virus (strain Cherry) (TBSV) [Reference proteome]
Taxonomic identifier12147 [NCBI]
Taxonomic lineageVirusesssRNA positive-strand viruses, no DNA stageTombusviridaeTombusvirus
Virus hostCapsicum annuum (Bell pepper) [TaxID: 4072]
Malus [TaxID: 3749]
Pyrus (pears) [TaxID: 3766]
Solanum lycopersicum (Tomato) (Lycopersicon esculentum) [TaxID: 4081]
Solanum melongena (Eggplant) (Aubergine) [TaxID: 4111]
Tolmiea menziesii [TaxID: 29777]
Tulipa [TaxID: 13305]

Protein attributes

Sequence length388 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 32-35 nm in diameter, and consisting of 180 capsid proteins.

Subunit structure

Homomultimer Potential.

Subcellular location

Virion Potential.

Sequence similarities

Belongs to the icosahedral plant coat protein family.

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 388388Capsid protein
PRO_0000222867

Regions

Region1 – 102102R domain, interaction with RNA
Region56 – 616Involved in encapsidation By similarity
Region103 – 264162S domain, virion shell
Region265 – 388124P domain, projecting

Sequences

Sequence LengthMass (Da)Tools
P11689 [UniParc].

Last modified October 1, 1989. Version 1.
Checksum: 55C94E5C3C445A69

FASTA38841,151
        10         20         30         40         50         60 
MAMVKRNNNT GMIPVSTKQL LALGAAAGAT ALQGFVKNNG MAIVEGAVDL TKRAYKAVRR 

        70         80         90        100        110        120 
RGGKKQQMIN HVGGTGGAIM APVAVTRQLV GSKPKFTGRT SGSVTVTHRE YLSQVNNSTG 

       130        140        150        160        170        180 
FQVNGGIVGN LLQLNPLNGT LFSWLPAIAS NFDQYTFNSV VLHYVPLCST TEVGRVAIYF 

       190        200        210        220        230        240 
DKDSEDPEPA DRVELANYSV LKETAPWAEA MLRVPTDKIK RFCDDSSTSD HKLIDLGQLG 

       250        260        270        280        290        300 
IATYGGAGTN AVGDIFISYS VTLYFPQPTN TLLSTRRLDL AGALVTASGP GYLLVSRTAT 

       310        320        330        340        350        360 
VLTMTFRATG TFVISGTYRC LTATTLGLAG GVNVNSITVV DNIGTDSAFF INCTVSNLPS 

       370        380 
VVTFTSTGIT SATVHCVRAT RQNDVSLI 

« Hide

References

[1]"Organization of tomato bushy stunt virus genome: characterization of the coat protein gene and the 3' terminus."
Hillman B.I., Hearne P.Q., Rochon D., Morris T.J.
Virology 169:42-50(1989) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
[2]"The complete genome structure and synthesis of infectious RNA from clones of tomato bushy stunt virus."
Hearne P.Q., Knorr D.A., Hillman B.I., Morris T.J.
Virology 177:141-151(1990) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
M21958 Genomic RNA. Translation: AAB02536.1.
PIRVCVGTB. JA0114.
RefSeqNP_062899.1. NC_001554.1.

3D structure databases

ProteinModelPortalP11689.
SMRP11689. Positions 68-388.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID1493953.

Family and domain databases

Gene3D2.60.120.20. 1 hit.
InterProIPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view]
PfamPF00729. Viral_coat. 1 hit.
[Graphical view]
PRINTSPR00233. ICOSAHEDRAL.
PROSITEPS00555. ICOSAH_VIR_COAT_S. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameCAPSD_TBSVC
AccessionPrimary (citable) accession number: P11689
Entry history
Integrated into UniProtKB/Swiss-Prot: October 1, 1989
Last sequence update: October 1, 1989
Last modified: July 9, 2014
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families