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P11689

- CAPSD_TBSVC

UniProt

P11689 - CAPSD_TBSVC

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Protein
Capsid protein
Gene
ORF2
Organism
Tomato bushy stunt virus (strain Cherry) (TBSV)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 32-35 nm in diameter, and consisting of 180 capsid proteins.

GO - Molecular functioni

  1. RNA binding Source: UniProtKB-KW
  2. structural molecule activity Source: InterPro
Complete GO annotation...

Keywords - Ligandi

RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Capsid protein
Alternative name(s):
Coat protein
p41
Gene namesi
ORF Names:ORF2
OrganismiTomato bushy stunt virus (strain Cherry) (TBSV)
Taxonomic identifieri12147 [NCBI]
Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageTombusviridaeTombusvirus
Virus hostiCapsicum annuum (Bell pepper) [TaxID: 4072]
Malus [TaxID: 3749]
Pyrus (pears) [TaxID: 3766]
Solanum lycopersicum (Tomato) (Lycopersicon esculentum) [TaxID: 4081]
Solanum melongena (Eggplant) (Aubergine) [TaxID: 4111]
Tolmiea menziesii [TaxID: 29777]
Tulipa [TaxID: 13305]
ProteomesiUP000001666: Genome

Subcellular locationi

Virion Reviewed prediction

GO - Cellular componenti

  1. T=3 icosahedral viral capsid Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Capsid protein, T=3 icosahedral capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 388388Capsid protein
PRO_0000222867Add
BLAST

Interactioni

Subunit structurei

Homomultimer Reviewed prediction.

Structurei

3D structure databases

ProteinModelPortaliP11689.
SMRiP11689. Positions 68-388.

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni1 – 102102R domain, interaction with RNA
Add
BLAST
Regioni56 – 616Involved in encapsidation By similarity
Regioni103 – 264162S domain, virion shell
Add
BLAST
Regioni265 – 388124P domain, projecting
Add
BLAST

Sequence similaritiesi

Family and domain databases

Gene3Di2.60.120.20. 1 hit.
InterProiIPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view]
PfamiPF00729. Viral_coat. 1 hit.
[Graphical view]
PRINTSiPR00233. ICOSAHEDRAL.
PROSITEiPS00555. ICOSAH_VIR_COAT_S. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P11689-1 [UniParc]FASTAAdd to Basket

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MAMVKRNNNT GMIPVSTKQL LALGAAAGAT ALQGFVKNNG MAIVEGAVDL    50
TKRAYKAVRR RGGKKQQMIN HVGGTGGAIM APVAVTRQLV GSKPKFTGRT 100
SGSVTVTHRE YLSQVNNSTG FQVNGGIVGN LLQLNPLNGT LFSWLPAIAS 150
NFDQYTFNSV VLHYVPLCST TEVGRVAIYF DKDSEDPEPA DRVELANYSV 200
LKETAPWAEA MLRVPTDKIK RFCDDSSTSD HKLIDLGQLG IATYGGAGTN 250
AVGDIFISYS VTLYFPQPTN TLLSTRRLDL AGALVTASGP GYLLVSRTAT 300
VLTMTFRATG TFVISGTYRC LTATTLGLAG GVNVNSITVV DNIGTDSAFF 350
INCTVSNLPS VVTFTSTGIT SATVHCVRAT RQNDVSLI 388
Length:388
Mass (Da):41,151
Last modified:October 1, 1989 - v1
Checksum:i55C94E5C3C445A69
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
M21958 Genomic RNA. Translation: AAB02536.1.
PIRiJA0114. VCVGTB.
RefSeqiNP_062899.1. NC_001554.1.

Genome annotation databases

GeneIDi1493953.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
M21958 Genomic RNA. Translation: AAB02536.1 .
PIRi JA0114. VCVGTB.
RefSeqi NP_062899.1. NC_001554.1.

3D structure databases

ProteinModelPortali P11689.
SMRi P11689. Positions 68-388.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 1493953.

Family and domain databases

Gene3Di 2.60.120.20. 1 hit.
InterProi IPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view ]
Pfami PF00729. Viral_coat. 1 hit.
[Graphical view ]
PRINTSi PR00233. ICOSAHEDRAL.
PROSITEi PS00555. ICOSAH_VIR_COAT_S. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Organization of tomato bushy stunt virus genome: characterization of the coat protein gene and the 3' terminus."
    Hillman B.I., Hearne P.Q., Rochon D., Morris T.J.
    Virology 169:42-50(1989) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
  2. "The complete genome structure and synthesis of infectious RNA from clones of tomato bushy stunt virus."
    Hearne P.Q., Knorr D.A., Hillman B.I., Morris T.J.
    Virology 177:141-151(1990) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Entry informationi

Entry nameiCAPSD_TBSVC
AccessioniPrimary (citable) accession number: P11689
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1989
Last sequence update: October 1, 1989
Last modified: July 9, 2014
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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