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Protein

Uncharacterized protein YggD

Gene

yggD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG11162-MONOMER.
ECOL316407:JW2896-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YggD
Gene namesi
Name:yggD
Ordered Locus Names:b2929, JW2896
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11162. yggD.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001693631 – 169Uncharacterized protein YggDAdd BLAST169

Proteomic databases

PaxDbiP11663.
PRIDEiP11663.

Interactioni

Protein-protein interaction databases

BioGridi4262333. 86 interactors.
IntActiP11663. 5 interactors.
STRINGi511145.b2929.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3C8GX-ray2.50A/C/D1-169[»]
ProteinModelPortaliP11663.
SMRiP11663.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP11663.

Family & Domainsi

Sequence similaritiesi

To E.coli MtlR.Curated

Phylogenomic databases

eggNOGiENOG4108R4K. Bacteria.
COG3722. LUCA.
HOGENOMiHOG000124415.
OMAiMRYESLI.

Family and domain databases

InterProiIPR007761. MtlR.
[Graphical view]
PfamiPF05068. MtlR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P11663-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATLTEDDVL EQLDAQDNLF SFMKTAHTIL LQGIRQFLPS LFVDNDEEIV
60 70 80 90 100
EYAVKPLLAQ SGPLDDIDVA LRLIYALGKM DKWLYADITH FSQFWHYLNE
110 120 130 140 150
QDETPGFADD MTWDFISNVN SITRNAMLYD ALKAMKFADF SVWSEARFSG
160
MVKTALTLAV TTTLKELTP
Length:169
Mass (Da):19,272
Last modified:October 1, 1996 - v3
Checksum:i427302F600960D31
GO

Sequence cautioni

The sequence CAA32601 differs from that shown. Reason: Erroneous initiation.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U28377 Genomic DNA. Translation: AAA69096.1.
U00096 Genomic DNA. Translation: AAC75966.1.
AP009048 Genomic DNA. Translation: BAE76993.1.
X14436 Genomic DNA. Translation: CAA32601.1. Different initiation.
PIRiH65077. QQEC2B.
RefSeqiNP_417404.1. NC_000913.3.
WP_000224147.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75966; AAC75966; b2929.
BAE76993; BAE76993; BAE76993.
GeneIDi946861.
KEGGiecj:JW2896.
eco:b2929.
PATRICi32121272. VBIEscCol129921_3024.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U28377 Genomic DNA. Translation: AAA69096.1.
U00096 Genomic DNA. Translation: AAC75966.1.
AP009048 Genomic DNA. Translation: BAE76993.1.
X14436 Genomic DNA. Translation: CAA32601.1. Different initiation.
PIRiH65077. QQEC2B.
RefSeqiNP_417404.1. NC_000913.3.
WP_000224147.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3C8GX-ray2.50A/C/D1-169[»]
ProteinModelPortaliP11663.
SMRiP11663.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262333. 86 interactors.
IntActiP11663. 5 interactors.
STRINGi511145.b2929.

Proteomic databases

PaxDbiP11663.
PRIDEiP11663.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75966; AAC75966; b2929.
BAE76993; BAE76993; BAE76993.
GeneIDi946861.
KEGGiecj:JW2896.
eco:b2929.
PATRICi32121272. VBIEscCol129921_3024.

Organism-specific databases

EchoBASEiEB1151.
EcoGeneiEG11162. yggD.

Phylogenomic databases

eggNOGiENOG4108R4K. Bacteria.
COG3722. LUCA.
HOGENOMiHOG000124415.
OMAiMRYESLI.

Enzyme and pathway databases

BioCyciEcoCyc:EG11162-MONOMER.
ECOL316407:JW2896-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP11663.
PROiP11663.

Family and domain databases

InterProiIPR007761. MtlR.
[Graphical view]
PfamiPF05068. MtlR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYGGD_ECOLI
AccessioniPrimary (citable) accession number: P11663
Secondary accession number(s): Q2M9R3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1989
Last sequence update: October 1, 1996
Last modified: November 2, 2016
This is version 109 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.