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P11642

- CAPSD_MCMVK

UniProt

P11642 - CAPSD_MCMVK

Protein

Capsid protein

Gene

ORF4

Organism
Maize chlorotic mottle virus (isolate United States/Kansas/1987) (MCMV)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 59 (01 Oct 2014)
      Sequence version 1 (01 Oct 1989)
      Previous versions | rss
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    Functioni

    Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 28-34 nm in diameter, and consisting of 180 capsid proteins.

    GO - Molecular functioni

    1. RNA binding Source: UniProtKB-KW
    2. structural molecule activity Source: InterPro

    Keywords - Ligandi

    RNA-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Capsid protein
    Alternative name(s):
    Coat protein
    p25
    Gene namesi
    ORF Names:ORF4
    OrganismiMaize chlorotic mottle virus (isolate United States/Kansas/1987) (MCMV)
    Taxonomic identifieri882210 [NCBI]
    Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageTombusviridaeMachlomovirus
    Virus hostiZea mays (Maize) [TaxID: 4577]
    ProteomesiUP000007071: Genome

    Subcellular locationi

    Virion Curated

    GO - Cellular componenti

    1. T=3 icosahedral viral capsid Source: UniProtKB-KW

    Keywords - Cellular componenti

    Capsid protein, T=3 icosahedral capsid protein, Virion

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 236236Capsid proteinPRO_0000222863Add
    BLAST

    Interactioni

    Subunit structurei

    Homomultimer.Curated

    Structurei

    3D structure databases

    ProteinModelPortaliP11642.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni1 – 5151R domain, interaction with RNAAdd
    BLAST
    Regioni52 – 217166S domain, virion shellAdd
    BLAST
    Regioni218 – 23619P domain, projectingAdd
    BLAST

    Sequence similaritiesi

    Family and domain databases

    Gene3Di2.60.120.20. 1 hit.
    InterProiIPR000937. Capsid_prot_S-dom_vir.
    IPR029053. Viral_coat.
    [Graphical view]
    PfamiPF00729. Viral_coat. 1 hit.
    [Graphical view]
    PROSITEiPS00555. ICOSAH_VIR_COAT_S. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P11642-1 [UniParc]FASTAAdd to Basket

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    MAASSRSTRG RKQRGRSVEA KSRAIRANPP VPRPNPQRNR PPPAGTTCSM    50
    SEILLAVSAT TADQILEIPV CAGIDFPAGT SPRYIGAAKW LAAQSQMWNT 100
    IVFNSVRITW ETFTADTTSG YISMAFLSDY MLSIPTGVED VARIVPSATI 150
    ALKNRGPSIV MPQNRTVFRC IQAGQFAALG SAADKQMYSP GRFIVAIPKA 200
    SATQAVGQIK ISYSVSYRGA AILQPALVPG PGLANH 236
    Length:236
    Mass (Da):25,149
    Last modified:October 1, 1989 - v1
    Checksum:i0AAF4E549B0F4950
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X14736 Genomic RNA. Translation: CAA32864.1.
    PIRiJQ0061.
    RefSeqiNP_619722.1. NC_003627.1.

    Genome annotation databases

    GeneIDi2652941.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X14736 Genomic RNA. Translation: CAA32864.1 .
    PIRi JQ0061.
    RefSeqi NP_619722.1. NC_003627.1.

    3D structure databases

    ProteinModelPortali P11642.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 2652941.

    Family and domain databases

    Gene3Di 2.60.120.20. 1 hit.
    InterProi IPR000937. Capsid_prot_S-dom_vir.
    IPR029053. Viral_coat.
    [Graphical view ]
    Pfami PF00729. Viral_coat. 1 hit.
    [Graphical view ]
    PROSITEi PS00555. ICOSAH_VIR_COAT_S. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The complete nucleotide sequence of the maize chlorotic mottle virus genome."
      Nutter R.C., Scheets K., Panganiban L.C., Lommel S.A.
      Nucleic Acids Res. 17:3163-3177(1989) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

    Entry informationi

    Entry nameiCAPSD_MCMVK
    AccessioniPrimary (citable) accession number: P11642
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: October 1, 1989
    Last sequence update: October 1, 1989
    Last modified: October 1, 2014
    This is version 59 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programViral Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3