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P11642

- CAPSD_MCMVK

UniProt

P11642 - CAPSD_MCMVK

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Protein

Capsid protein

Gene
ORF4
Organism
Maize chlorotic mottle virus (isolate United States/Kansas/1987) (MCMV)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 28-34 nm in diameter, and consisting of 180 capsid proteins.

GO - Molecular functioni

  1. RNA binding Source: UniProtKB-KW
  2. structural molecule activity Source: InterPro
Complete GO annotation...

Keywords - Ligandi

RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Capsid protein
Alternative name(s):
Coat protein
p25
Gene namesi
ORF Names:ORF4
OrganismiMaize chlorotic mottle virus (isolate United States/Kansas/1987) (MCMV)
Taxonomic identifieri882210 [NCBI]
Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageTombusviridaeMachlomovirus
Virus hostiZea mays (Maize) [TaxID: 4577]
ProteomesiUP000007071: Genome

Subcellular locationi

Virion Reviewed prediction

GO - Cellular componenti

  1. T=3 icosahedral viral capsid Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Capsid protein, T=3 icosahedral capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 236236Capsid proteinPRO_0000222863Add
BLAST

Interactioni

Subunit structurei

Homomultimer Reviewed prediction.

Structurei

3D structure databases

ProteinModelPortaliP11642.

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni1 – 5151R domain, interaction with RNAAdd
BLAST
Regioni52 – 217166S domain, virion shellAdd
BLAST
Regioni218 – 23619P domain, projectingAdd
BLAST

Sequence similaritiesi

Family and domain databases

Gene3Di2.60.120.20. 1 hit.
InterProiIPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view]
PfamiPF00729. Viral_coat. 1 hit.
[Graphical view]
PROSITEiPS00555. ICOSAH_VIR_COAT_S. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P11642-1 [UniParc]FASTAAdd to Basket

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MAASSRSTRG RKQRGRSVEA KSRAIRANPP VPRPNPQRNR PPPAGTTCSM    50
SEILLAVSAT TADQILEIPV CAGIDFPAGT SPRYIGAAKW LAAQSQMWNT 100
IVFNSVRITW ETFTADTTSG YISMAFLSDY MLSIPTGVED VARIVPSATI 150
ALKNRGPSIV MPQNRTVFRC IQAGQFAALG SAADKQMYSP GRFIVAIPKA 200
SATQAVGQIK ISYSVSYRGA AILQPALVPG PGLANH 236
Length:236
Mass (Da):25,149
Last modified:October 1, 1989 - v1
Checksum:i0AAF4E549B0F4950
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X14736 Genomic RNA. Translation: CAA32864.1.
PIRiJQ0061.
RefSeqiNP_619722.1. NC_003627.1.

Genome annotation databases

GeneIDi2652941.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X14736 Genomic RNA. Translation: CAA32864.1 .
PIRi JQ0061.
RefSeqi NP_619722.1. NC_003627.1.

3D structure databases

ProteinModelPortali P11642.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 2652941.

Family and domain databases

Gene3Di 2.60.120.20. 1 hit.
InterProi IPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view ]
Pfami PF00729. Viral_coat. 1 hit.
[Graphical view ]
PROSITEi PS00555. ICOSAH_VIR_COAT_S. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The complete nucleotide sequence of the maize chlorotic mottle virus genome."
    Nutter R.C., Scheets K., Panganiban L.C., Lommel S.A.
    Nucleic Acids Res. 17:3163-3177(1989) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Entry informationi

Entry nameiCAPSD_MCMVK
AccessioniPrimary (citable) accession number: P11642
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1989
Last sequence update: October 1, 1989
Last modified: July 9, 2014
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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