Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

P11642 (CAPSD_MCMVK) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 58. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Capsid protein
Alternative name(s):
Coat protein
p25
Gene names
ORF Names:ORF4
OrganismMaize chlorotic mottle virus (isolate United States/Kansas/1987) (MCMV) [Reference proteome]
Taxonomic identifier882210 [NCBI]
Taxonomic lineageVirusesssRNA positive-strand viruses, no DNA stageTombusviridaeMachlomovirus
Virus hostZea mays (Maize) [TaxID: 4577]

Protein attributes

Sequence length236 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 28-34 nm in diameter, and consisting of 180 capsid proteins.

Subunit structure

Homomultimer Potential.

Subcellular location

Virion Potential.

Sequence similarities

Belongs to the icosahedral plant coat protein family.

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 236236Capsid protein
PRO_0000222863

Regions

Region1 – 5151R domain, interaction with RNA
Region52 – 217166S domain, virion shell
Region218 – 23619P domain, projecting

Sequences

Sequence LengthMass (Da)Tools
P11642 [UniParc].

Last modified October 1, 1989. Version 1.
Checksum: 0AAF4E549B0F4950

FASTA23625,149
        10         20         30         40         50         60 
MAASSRSTRG RKQRGRSVEA KSRAIRANPP VPRPNPQRNR PPPAGTTCSM SEILLAVSAT 

        70         80         90        100        110        120 
TADQILEIPV CAGIDFPAGT SPRYIGAAKW LAAQSQMWNT IVFNSVRITW ETFTADTTSG 

       130        140        150        160        170        180 
YISMAFLSDY MLSIPTGVED VARIVPSATI ALKNRGPSIV MPQNRTVFRC IQAGQFAALG 

       190        200        210        220        230 
SAADKQMYSP GRFIVAIPKA SATQAVGQIK ISYSVSYRGA AILQPALVPG PGLANH 

« Hide

References

[1]"The complete nucleotide sequence of the maize chlorotic mottle virus genome."
Nutter R.C., Scheets K., Panganiban L.C., Lommel S.A.
Nucleic Acids Res. 17:3163-3177(1989) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
X14736 Genomic RNA. Translation: CAA32864.1.
PIRJQ0061.
RefSeqNP_619722.1. NC_003627.1.

3D structure databases

ProteinModelPortalP11642.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID2652941.

Family and domain databases

Gene3D2.60.120.20. 1 hit.
InterProIPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view]
PfamPF00729. Viral_coat. 1 hit.
[Graphical view]
PROSITEPS00555. ICOSAH_VIR_COAT_S. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameCAPSD_MCMVK
AccessionPrimary (citable) accession number: P11642
Entry history
Integrated into UniProtKB/Swiss-Prot: October 1, 1989
Last sequence update: October 1, 1989
Last modified: July 9, 2014
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families