P11624 (CAPSD_PLRVW) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Major capsid protein

Alternative name(s):
Coat protein
Short name=CP

Gene names

ORF Names:

ORF3

Organism

Potato leafroll virus (strain Potato/Netherlands/Wageningen/1989) (PLrV) [Complete proteome]

Taxonomic identifier

12048 [NCBI]

Taxonomic lineage

Viruses › ssRNA viruses › ssRNA positive-strand viruses, no DNA stage › Luteoviridae › Polerovirus › Potato leafroll virus

Virus host

Solanum tuberosum (Potato) [TaxID: 4113]

Protein attributes

Sequence length	208 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Major capsid protein.
Subcellular location	Virion Potential.
Miscellaneous	The N-terminal region like those of many plant virus capsid proteins is highly basic. It has been suggested that these regions may be involved in protein-RNA interaction.
Sequence similarities	Belongs to the luteoviruses capsid protein family.

Ontologies

Keywords
Cellular component	Virion
Molecular function	Capsid protein T=3 icosahedral capsid protein
Technical term	Complete proteome
Gene Ontology (GO)
Cellular_component	T=3 icosahedral viral capsid Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	structural molecule activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 208	208	Major capsid protein		PRO_0000222413
Regions
	Compositional bias	18 – 66	49	Arg-rich

Sequences

	Sequence		Length	Mass (Da)
	P11624 [UniParc]. Last modified February 1, 1996. Version 2. Checksum: 03F321A3A1E03140	FASTA	208	23,234
	10 20 30 40 50 60 MSTVVVKGNV NGGVQQPRRR RRQSLRRRAN RVQPVVMVTA PGQPRRRRRR RGGNRRSRRT 70 80 90 100 110 120 GVPRGRGSSE TFVFTKDNLM GNSQGSFTFG PSLSDCPAFK DGILKAYHEY KITSILLQFV 130 140 150 160 170 180 SEASSTSSGS IAYELDPHCK VSSLQSYVNQ FQIPQGGAKT YQARMINGVE WHDSSEDQCR 190 200 ILWKGNGKSS DTAGSFRVTI RVALQNPK

References

[1]	"Nucleotide sequence and organization of potato leafroll virus genomic RNA." van der Wilk F., Huisman M.J., Cornelissen B.J.C., Huttinga H., Goldbach R.W. FEBS Lett. 245:51-56(1989) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	Y07496 Genomic RNA. Translation: CAA68797.1.
PIR	VCVQWA. S03549.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Family and domain databases
InterPro	IPR001517. Luteo_coat. [Graphical view]
Pfam	PF00894. Luteo_coat. 1 hit. [Graphical view]
PRINTS	PR00915. LUTEOGP1COAT.
ProtoNet	Search...

Entry information

Entry name

CAPSD_PLRVW

Accession

Primary (citable) accession number: P11624

Entry history

Integrated into UniProtKB/Swiss-Prot:	October 1, 1989
Last sequence update:	February 1, 1996
Last modified:	April 3, 2013
This is version 49 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Viral Protein Annotation Program