Reviewed,
UniProtKB/Swiss-Prot P11505 (AT2B1_RAT)
Last modified
February 9, 2010.
Version 114.
History...
Clusters with 100%,
90%,
50% identity |
Documents (1) |
Third-party data |
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Names and origin
| Protein names | Recommended name: Plasma membrane calcium-transporting ATPase 1 Short name=PMCA1 EC=3.6.3.8 Alternative name(s): Plasma membrane calcium ATPase isoform 1 Plasma membrane calcium pump isoform 1 | ||
| Gene names |
| ||
| Organism | Rattus norvegicus (Rat) | ||
| Taxonomic identifier | 10116 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus |
Protein attributes
| Sequence length | 1258 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at transcript level. |
General annotation (Comments)
| Function | This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium out of the cell. |
| Catalytic activity | ATP + H2O + Ca2+(Cis) = ADP + phosphate + Ca2+(Trans). |
| Subcellular location | |
| Tissue specificity | Isoform B is ubiquitously expressed. Isoforms A and E have only been found in brain cortex. Isoform C is found in brain cortex, skeletal muscle and heart muscle. Isoform D has only been found in fetal skeletal muscle. Isoform K has been found in small intestine and liver. |
| Sequence similarities | Belongs to the cation transport ATPase (P-type) family. Type IIB subfamily. |
| Sequence caution | The sequence AAA50878.1 differs from that shown. Reason: Frameshift at several positions. |
Ontologies
Alternative products
| This entry describes 6 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform D (identifier: P11505-1) Also known as: CIV; This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform A (identifier: P11505-2) Also known as: CII; The sequence of this isoform differs from the canonical sequence as follows: 1156-1258: IRVVNAFRSS...SPLHSLETSL → VVFSSSTASTPVGYPSGECIS | ||||||
| Isoform B (identifier: P11505-3) Also known as: CI; The sequence of this isoform differs from the canonical sequence as follows: 1118-1155: Missing. | ||||||
| Isoform C (identifier: P11505-4) Also known as: CIII; The sequence of this isoform differs from the canonical sequence as follows: 1147-1155: Missing. | ||||||
| Isoform E (identifier: P11505-5) Also known as: CV; The sequence of this isoform differs from the canonical sequence as follows: 1156-1258: IRVVNAFRSS...SPLHSLETSL → VVFSSSTASTPVGSEW | ||||||
| Isoform K (identifier: P11505-6) The sequence of this isoform differs from the canonical sequence as follows: 1021-1056: Missing. 1118-1155: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1258 | 1258 | Plasma membrane calcium-transporting ATPase 1 | PRO_0000046212 | |||||
Regions | |||||||||
| Topological domain | 1 – 97 | 97 | Cytoplasmic Potential | ||||||
| Transmembrane | 98 – 118 | 21 | Potential | ||||||
| Topological domain | 119 – 154 | 36 | Extracellular Potential | ||||||
| Transmembrane | 155 – 175 | 21 | Potential | ||||||
| Topological domain | 176 – 366 | 191 | Cytoplasmic Potential | ||||||
| Transmembrane | 367 – 386 | 20 | Potential | ||||||
| Topological domain | 387 – 419 | 33 | Extracellular Potential | ||||||
| Transmembrane | 420 – 437 | 18 | Potential | ||||||
| Topological domain | 438 – 852 | 415 | Cytoplasmic Potential | ||||||
| Transmembrane | 853 – 872 | 20 | Potential | ||||||
| Topological domain | 873 – 882 | 10 | Extracellular Potential | ||||||
| Transmembrane | 883 – 903 | 21 | Potential | ||||||
| Topological domain | 904 – 923 | 20 | Cytoplasmic Potential | ||||||
| Transmembrane | 924 – 946 | 23 | Potential | ||||||
| Topological domain | 947 – 964 | 18 | Extracellular Potential | ||||||
| Transmembrane | 965 – 986 | 22 | Potential | ||||||
| Topological domain | 987 – 1005 | 19 | Cytoplasmic Potential | ||||||
| Transmembrane | 1006 – 1027 | 22 | Potential | ||||||
| Topological domain | 1028 – 1037 | 10 | Extracellular Potential | ||||||
| Transmembrane | 1038 – 1059 | 22 | Potential | ||||||
| Topological domain | 1060 – 1258 | 199 | Cytoplasmic Potential | ||||||
| Region | 1100 – 1117 | 18 | Calmodulin-binding subdomain A By similarity | ||||||
| Region | 1118 – 1127 | 10 | Calmodulin-binding subdomain B By similarity | ||||||
| Compositional bias | 296 – 299 | 4 | Poly-Glu | ||||||
Sites | |||||||||
| Active site | 475 | 1 | 4-aspartylphosphate intermediate | ||||||
| Metal binding | 797 | 1 | Magnesium By similarity | ||||||
| Metal binding | 801 | 1 | Magnesium By similarity | ||||||
Amino acid modifications | |||||||||
| Modified residue | 17 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 1116 | 1 | Phosphothreonine; by PKC By similarity | ||||||
| Modified residue | 1193 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 1203 | 1 | Phosphothreonine By similarity | ||||||
| Modified residue | 1215 | 1 | Phosphoserine; by PKA By similarity | ||||||
| Modified residue | 1220 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 1246 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 1249 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 1253 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 1256 | 1 | Phosphothreonine By similarity | ||||||
| Modified residue | 1257 | 1 | Phosphoserine By similarity | ||||||
Natural variations | |||||||||
| Alternative sequence | 1021 – 1056 | 36 | Missing in isoform K. | VSP_000379 | |||||
| Alternative sequence | 1118 – 1155 | 38 | Missing in isoform B and isoform K. | VSP_000380 | |||||
| Alternative sequence | 1147 – 1155 | 9 | Missing in isoform C. | VSP_000381 | |||||
| Alternative sequence | 1156 – 1258 | 103 | IRVVN…LETSL → VVFSSSTASTPVGYPSGECI S in isoform A. | VSP_000382 | |||||
| Alternative sequence | 1156 – 1258 | 103 | IRVVN…LETSL → VVFSSSTASTPVGSEW in isoform E. | VSP_000383 | |||||
Experimental info | |||||||||
| Sequence conflict | 1125 | 1 | Q → R in AAD46085. Ref.2 | ||||||
Sequences
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References
| [1] | "Molecular cloning of two isoforms of the plasma membrane Ca2+-transporting ATPase from rat brain. Structural and functional domains exhibit similarity to Na+,K+- and other cation transport ATPases." Shull G.E., Greeb J. J. Biol. Chem. 263:8646-8657(1988) [PubMed: 2837461] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM A). |
| [2] | "Expression of multiple plasma membrane Ca(2+)-ATPases in rat pancreatic islet cells." Kamagate A., Herchuelz A., Bollen A., Van Eylen F. Cell Calcium 27:231-246(2000) [PubMed: 10858669] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 926-1164 (ISOFORM K). Tissue: Pancreatic islet. |
| [3] | "Alternative splicing of exons encoding the calmodulin-binding domains and C termini of plasma membrane Ca(2+)-ATPase isoforms 1, 2, 3, and 4." Keeton T.P., Burk S.E., Shull G.E. J. Biol. Chem. 268:2740-2748(1993) [PubMed: 8428948] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1057-1232, ALTERNATIVE SPLICING (ISOFORMS A; B; C; D AND E). Strain: Sprague-Dawley. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | J03753 mRNA. Translation: AAA73898.1. L04739 Genomic DNA. Translation: AAA50878.1. Sequence problems. AF076783 mRNA. Translation: AAD46085.1. |
| IPI | IPI00194873. IPI00231267. IPI00231268. IPI00231269. IPI00231270. IPI00231271. |
| PIR | A28065. D45213. |
| RefSeq | NP_445763.1. |
| UniGene | Rn.7208 |
3D structure databases | |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | P11505. |
PTM databases | |
| PhosphoSite | P11505. |
Genome annotation databases | |
| Ensembl | ENSRNOT00000041354; ENSRNOP00000040092; ENSRNOG00000004026; Rattus norvegicus. [Genome view] ENSRNOT00000066174; ENSRNOP00000059397; ENSRNOG00000004026; Rattus norvegicus. [Genome view] |
| GeneID | 29598. |
| KEGG | rno:29598. |
| UCSC | NM_053311. rat. |
Organism-specific databases | |
| CTD | 29598. |
| RGD | 621303. Atp2b1. |
Phylogenomic databases | |
| eggNOG | roNOG14596. |
| HOVERGEN | P11505. |
| InParanoid | P11505. |
| PhylomeDB | P11505. |
Enzyme and pathway databases | |
| BRENDA | 3.6.3.8. 248. |
Gene expression databases | |
| ArrayExpress | P11505. |
| Genevestigator | P11505. |
| GermOnline | ENSRNOG00000004026. Rattus norvegicus. |
Family and domain databases | |
| InterPro | IPR008250. ATPase_P-typ_ATPase-assoc-dom. IPR006408. ATPase_P-typ_Ca-transp_PMCA. IPR006068. ATPase_P-typ_cation-transptr_C. IPR004014. ATPase_P-typ_cation-transptr_N. IPR001757. ATPase_P-typ_ion-transptr. IPR018303. ATPase_P-typ_P_site. IPR005834. Dehalogen-like_hydro. [Graphical view] |
| PANTHER | PTHR11939. ATPase_P. 1 hit. |
| Pfam | PF00689. Cation_ATPase_C. 1 hit. PF00690. Cation_ATPase_N. 1 hit. PF00122. E1-E2_ATPase. 1 hit. PF00702. Hydrolase. 1 hit. [Graphical view] |
| PRINTS | PR00119. CATATPASE. |
| SMART | SM00831. Cation_ATPase_N. 1 hit. [Graphical view] |
| TIGRFAMs | TIGR01517. ATPase-IIB_Ca. 1 hit. TIGR01494. ATPase_P-type. 4 hits. |
| PROSITE | PS00154. ATPASE_E1_E2. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other Resources | |
| NextBio | 609750. |
Entry information
| Entry name | AT2B1_RAT | ||||||||
| Accession | Primary (citable) accession number: P11505 Secondary accession number(s): Q63442, Q9R1L7 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HPI (Human Proteome Initiative) | ||||||||

Clusters with


