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P11346 (KRAF1_DROME) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 142. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Raf homolog serine/threonine-protein kinase phl

Short name=D-Raf
Short name=dRAF-1
EC=2.7.11.1
Alternative name(s):
Protein pole-hole
Gene names
Name:phl
Synonyms:ph
ORF Names:CG2845
OrganismDrosophila melanogaster (Fruit fly) [Reference proteome]
Taxonomic identifier7227 [NCBI]
Taxonomic lineageEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraEndopterygotaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora

Protein attributes

Sequence length782 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Serine/threonine kinase required in the early embryo for the formation of terminal structure. Also required during the proliferation of imaginal cells. May act downstream of ras1 in the sev signal transduction pathway. Ref.1 Ref.8

Catalytic activity

ATP + a protein = ADP + a phosphoprotein.

Cofactor

Binds 2 zinc ions per subunit By similarity.

Developmental stage

Expressed both maternally and zygotically. Zygotically expressed throughout embryogenesis. Ref.1 Ref.8

Post-translational modification

Extensively phosphorylated 1 to 2 hours after egg laying. Ref.8

Sequence similarities

Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. RAF subfamily.

Contains 1 phorbol-ester/DAG-type zinc finger.

Contains 1 protein kinase domain.

Contains 1 RBD (Ras-binding) domain.

Sequence caution

The sequence CAA30166.1 differs from that shown. Reason: Erroneous gene model prediction.

The sequence CAB72239.1 differs from that shown. Reason: Erroneous gene model prediction.

Ontologies

Keywords
   Coding sequence diversityAlternative splicing
Polymorphism
   DomainZinc-finger
   LigandATP-binding
Metal-binding
Nucleotide-binding
Zinc
   Molecular functionKinase
Serine/threonine-protein kinase
Transferase
   PTMPhosphoprotein
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processborder follicle cell migration

Inferred from genetic interaction PubMed 17637670. Source: FlyBase

dorsal/ventral axis specification, ovarian follicular epithelium

Inferred from mutant phenotype PubMed 7926754. Source: FlyBase

epidermal growth factor receptor signaling pathway

Inferred from genetic interaction PubMed 7926754. Source: FlyBase

gastrulation

Inferred from mutant phenotype PubMed 14602078. Source: FlyBase

imaginal disc-derived wing morphogenesis

Inferred from mutant phenotype PubMed 12930782. Source: FlyBase

instar larval development

Inferred from mutant phenotype PubMed 16182526. Source: FlyBase

intracellular signal transduction

Inferred from electronic annotation. Source: InterPro

lamellocyte differentiation

Inferred from mutant phenotype PubMed 11919715. Source: FlyBase

positive regulation of cell proliferation

Inferred from mutant phenotype PubMed 19141677. Source: FlyBase

positive regulation of photoreceptor cell differentiation

Inferred from mutant phenotype PubMed 16763554. Source: FlyBase

primary branching, open tracheal system

Traceable author statement PubMed 14570584. Source: FlyBase

protein autophosphorylation

Inferred from direct assay Ref.8. Source: FlyBase

regulation of multicellular organism growth

Inferred from mutant phenotype PubMed 16182526. Source: FlyBase

spermatogenesis

Inferred from mutant phenotype PubMed 11048723. Source: FlyBase

terminal region determination

Inferred from mutant phenotype PubMed 10652276PubMed 2516795. Source: FlyBase

torso signaling pathway

Inferred from mutant phenotype PubMed 9017398. Source: FlyBase

wing and notum subfield formation

Inferred from genetic interaction PubMed 10860999. Source: FlyBase

   Molecular_functionATP binding

Inferred from electronic annotation. Source: UniProtKB-KW

metal ion binding

Inferred from electronic annotation. Source: UniProtKB-KW

protein serine/threonine kinase activity

Inferred from direct assay Ref.8. Source: FlyBase

receptor signaling protein activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Alternative products

This entry describes 2 isoforms produced by alternative splicing. [Align] [Select]
Isoform B (identifier: P11346-1)

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
Note: No experimental confirmation available.
Isoform A (identifier: P11346-2)

Also known as: C;

The sequence of this isoform differs from the canonical sequence as follows:
     55-97: Missing.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 782782Raf homolog serine/threonine-protein kinase phl
PRO_0000086194

Regions

Domain184 – 25572RBD
Domain472 – 733262Protein kinase
Zinc finger265 – 31147Phorbol-ester/DAG-type
Nucleotide binding478 – 4869ATP By similarity
Compositional bias346 – 37025Ser-rich

Sites

Active site5911Proton acceptor By similarity
Metal binding2631Zinc 1 By similarity
Metal binding2791Zinc 2 By similarity
Metal binding2821Zinc 2 By similarity
Metal binding2921Zinc 1 By similarity
Metal binding2951Zinc 1 By similarity
Metal binding3001Zinc 2 By similarity
Metal binding3031Zinc 2 By similarity
Metal binding3111Zinc 1 By similarity
Binding site4981ATP By similarity

Amino acid modifications

Modified residue3891Phosphoserine Ref.9

Natural variations

Alternative sequence55 – 9743Missing in isoform A.
VSP_035659
Natural variant3651P → L in strain: AA1. Ref.6
Natural variant3701S → T in strain: KLH4 and KLH6. Ref.6
Natural variant4031S → R in strain: Reids2. Ref.6
Natural variant5081A → T in strain: 5-17-88b#5.

Experimental info

Sequence conflict1611N → T in CAA30166. Ref.1
Sequence conflict4961A → P in CAA30166. Ref.1
Sequence conflict521 – 5233KKT → RKA in M16598. Ref.7
Sequence conflict5721G → R in M16598. Ref.7
Sequence conflict701 – 7044PQAL → RRHS in CAA30166. Ref.1

Sequences

Sequence LengthMass (Da)Tools
Isoform B [UniParc].

Last modified November 4, 2008. Version 5.
Checksum: A0C8C051D455D662

FASTA78288,634
        10         20         30         40         50         60 
MSSESSTEGD SDLYDPLAEE LHNVQLVKHV TRENIDALNA KFANLQEPPA MYLIGESSKA 

        70         80         90        100        110        120 
ELNTTWVLGN PTPTSKLFIK YPTYVYVCIS RLWFLPTEYQ ELTSKLHELE AKEQELMERL 

       130        140        150        160        170        180 
NSQDQQEDSS LVERFKEQPH YQNQTQILQQ QRQLARVHHG NDLTDSLGSQ PGSQCGTLTR 

       190        200        210        220        230        240 
QPKILLRAHL PNQQRTSVEV ISGVRLCDAL MKALKLRQLT PDMCEVSTTH SGRHIIPWHT 

       250        260        270        280        290        300 
DIGTLHVEEI FVRLLDKFPI RTHIKHQIIR KTFFSLVFCE GCRRLLFTGF YCSQCNFRFH 

       310        320        330        340        350        360 
QRCANRVPML CQPFPMDSYY QLLLAENPDN GVGFPGRGTA VRFNMSSRSR SRRCSSSGSS 

       370        380        390        400        410        420 
SSSKPPSSSS GNHRQGRPPR ISQDDRSNSA PNVCINNIRS VTSEVQRSLI MQARPPLPHP 

       430        440        450        460        470        480 
CTDHSNSTQA SPTSTLKHNR PRARSADESN KNLLLRDAKS SEENWNILAE EILIGPRIGS 

       490        500        510        520        530        540 
GSFGTVYRAH WHGPVAVKTL NVKTPSPAQL QAFKNEVAML KKTRHCNILL FMGCVSKPSL 

       550        560        570        580        590        600 
AIVTQWCEGS SLYKHVHVSE TKFKLNTLID IGRQVAQGMD YLHAKNIIHR DLKSNNIFLH 

       610        620        630        640        650        660 
EDLSVKIGDF GLATAKTRWS GEKQANQPTG SILWMAPEVI RMQELNPYSF QSDVYAFGIV 

       670        680        690        700        710        720 
MYELLAECLP YGHISNKDQI LFMVGRGLLR PDMSQVRSDA PQALKRLAED CIKYTPKDRP 

       730        740        750        760        770        780 
LFRPLLNMLE NMLRTLPKIH RSASEPNLTQ SQLQNDEFLY LPSPKTPVNF NNFQFFGSAG 


NI 

« Hide

Isoform A (C) [UniParc].

Checksum: B685A895D05048C1
Show »

FASTA73983,729

References

« Hide 'large scale' references
[1]"Proliferation of both somatic and germ cells is affected in the Drosophila mutants of raf proto-oncogene."
Nishida Y., Hata M., Ayaki T., Ryo H., Yamagata M., Shimizu K., Nishizuka Y.
EMBO J. 7:775-781(1988) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], FUNCTION, DEVELOPMENTAL STAGE.
[2]"The genome sequence of Drosophila melanogaster."
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D. expand/collapse author list , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G., Abril J.F., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D.A., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.-H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C.L., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J.H., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D.C., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.J., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.-Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., Woodage T., Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.-F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.C., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.
Science 287:2185-2195(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[3]"Annotation of the Drosophila melanogaster euchromatic genome: a systematic review."
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S., Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E., Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P., Bettencourt B.R., Celniker S.E., de Grey A.D.N.J. expand/collapse author list , Drysdale R.A., Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q., Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M., Lewis S.E.
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: GENOME REANNOTATION, ALTERNATIVE SPLICING.
Strain: Berkeley.
[4]"From sequence to chromosome: the tip of the X chromosome of D. melanogaster."
Benos P.V., Gatt M.K., Ashburner M., Murphy L., Harris D., Barrell B.G., Ferraz C., Vidal S., Brun C., Demailles J., Cadieu E., Dreano S., Gloux S., Lelaure V., Mottier S., Galibert F., Borkova D., Minana B. expand/collapse author list , Kafatos F.C., Louis C., Siden-Kiamos I., Bolshakov S., Papagiannakis G., Spanos L., Cox S., Madueno E., de Pablos B., Modolell J., Peter A., Schoettler P., Werner M., Mourkioti F., Beinert N., Dowe G., Schaefer U., Jaeckle H., Bucheton A., Callister D.M., Campbell L.A., Darlamitsou A., Henderson N.S., McMillan P.J., Salles C., Tait E.A., Valenti P., Saunders R.D.C., Glover D.M.
Science 287:2220-2222(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Oregon-R.
[5]"A Drosophila full-length cDNA resource."
Stapleton M., Carlson J.W., Brokstein P., Yu C., Champe M., George R.A., Guarin H., Kronmiller B., Pacleb J.M., Park S., Wan K.H., Rubin G.M., Celniker S.E.
Genome Biol. 3:RESEARCH0080.1-RESEARCH0080.8(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM A).
Strain: Berkeley.
Tissue: Head.
[6]"Contrasting selection pressures on components of the Ras-mediated signal transduction pathway in Drosophila."
Riley R.M., Jin W., Gibson G.
Mol. Ecol. 12:1315-1323(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 108-782, VARIANTS LEU-365; THR-370; ARG-403 AND THR-508.
Strain: 5-17-88b#5, AA1, AA16, AA18, AA20, AA3, AM2, CA2, G5b, JS, KK1, KK2, KK3, KK4, KKb2, KLGC5, KLH4, KLH6, KM1, KMb1, PYR2 and Reids2.
[7]"Drosophila melanogaster homologs of the raf oncogene."
Mark G.E., Macintyre R.J., Digan M.E., Ambrosio L., Perrimon N.
Mol. Cell. Biol. 7:2134-2140(1987) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 466-754.
[8]"Biochemical analysis of torso and D-raf during Drosophila embryogenesis: implications for terminal signal transduction."
Sprenger F., Torsoclair M.M., Morrison D.K.
Mol. Cell. Biol. 13:1163-1172(1993) [PubMed] [Europe PMC] [Abstract]
Cited for: FUNCTION, DEVELOPMENTAL STAGE, PHOSPHORYLATION.
[9]"Phosphoproteome analysis of Drosophila melanogaster embryos."
Zhai B., Villen J., Beausoleil S.A., Mintseris J., Gygi S.P.
J. Proteome Res. 7:1675-1682(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-389, MASS SPECTROMETRY.
Tissue: Embryo.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
X07181 Genomic DNA. Translation: CAA30166.1. Sequence problems.
AE014298 Genomic DNA. Translation: AAF45774.1.
AE014298 Genomic DNA. Translation: ABI30965.1.
AE014298 Genomic DNA. Translation: ABW09328.1.
AL133503 Genomic DNA. Translation: CAB72239.1. Sequence problems.
AY089490 mRNA. Translation: AAL90228.1.
AY135031 Genomic DNA. Translation: AAN17541.1.
AY135032 Genomic DNA. Translation: AAN17542.1.
AY135033 Genomic DNA. Translation: AAN17543.1.
AY135034 Genomic DNA. Translation: AAN17544.1.
AY135035 Genomic DNA. Translation: AAN17545.1.
AY135036 Genomic DNA. Translation: AAN17546.1.
AY135037 Genomic DNA. Translation: AAN17547.1.
AY135038 Genomic DNA. Translation: AAN17548.1.
AY135039 Genomic DNA. Translation: AAN17549.1.
AY135040 Genomic DNA. Translation: AAN17550.1.
AY135041 Genomic DNA. Translation: AAN17551.1.
AY135042 Genomic DNA. Translation: AAN17552.1.
AY135043 Genomic DNA. Translation: AAN17553.1.
AY135044 Genomic DNA. Translation: AAN17554.1.
AY135045 Genomic DNA. Translation: AAN17555.1.
AY135046 Genomic DNA. Translation: AAN17556.1.
AY135047 Genomic DNA. Translation: AAN17557.1.
AY135048 Genomic DNA. Translation: AAN17558.1.
AY135049 Genomic DNA. Translation: AAN17559.1.
AY135050 Genomic DNA. Translation: AAN17560.1.
AY135051 Genomic DNA. Translation: AAN17561.1.
AY135052 Genomic DNA. Translation: AAN17562.1.
M16598 Genomic DNA. No translation available.
PIRTVFFDF. S00393.
RefSeqNP_001036258.1. NM_001042793.2.
NP_001096867.2. NM_001103397.2.
NP_525047.1. NM_080308.3.
UniGeneDm.39.

3D structure databases

ProteinModelPortalP11346.
SMRP11346. Positions 186-256, 266-311, 420-764.
ModBaseSearch...

Protein-protein interaction databases

DIPDIP-29769N.
IntActP11346. 2 interactions.
MINTMINT-296874.

Proteomic databases

PaxDbP11346.
PRIDEP11346.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaFBtr0111025; FBpp0110324; FBgn0003079.
FBtr0333812; FBpp0305946; FBgn0003079.
GeneID31221.
KEGGdme:Dmel_CG2845.

Organism-specific databases

CTD31221.
FlyBaseFBgn0003079. phl.

Phylogenomic databases

eggNOGCOG0515.
GeneTreeENSGT00680000099647.
InParanoidP11346.
KOK02644.
OMALFTGFYC.
OrthoDBEOG49ZW49.
PhylomeDBP11346.

Enzyme and pathway databases

BRENDA2.7.10.2. 1994.

Gene expression databases

BgeeP11346.
GermOnlineCG2845. Drosophila melanogaster.

Family and domain databases

InterProIPR011009. Kinase-like_dom.
IPR002219. Prot_Kinase_C-like_PE/DAG-bd.
IPR000719. Prot_kinase_cat_dom.
IPR017441. Protein_kinase_ATP_BS.
IPR003116. Raf-like_ras-bd.
IPR001245. Ser-Thr/Tyr_kinase_cat_dom.
IPR008271. Ser/Thr_kinase_AS.
[Graphical view]
PfamPF00130. C1_1. 1 hit.
PF07714. Pkinase_Tyr. 1 hit.
PF02196. RBD. 1 hit.
[Graphical view]
SMARTSM00109. C1. 1 hit.
SM00455. RBD. 1 hit.
[Graphical view]
SUPFAMSSF56112. Kinase_like. 1 hit.
PROSITEPS00107. PROTEIN_KINASE_ATP. 1 hit.
PS50011. PROTEIN_KINASE_DOM. 1 hit.
PS00108. PROTEIN_KINASE_ST. 1 hit.
PS50898. RBD. 1 hit.
PS00479. ZF_DAG_PE_1. 1 hit.
PS50081. ZF_DAG_PE_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

GenomeRNAi31221.
NextBio772524.

Entry information

Entry nameKRAF1_DROME
AccessionPrimary (citable) accession number: P11346
Secondary accession number(s): A8JUV5 expand/collapse secondary AC list , Q0KHW7, Q8I086, Q8I0D9, Q8ISE1, Q8ISE2, Q8ISE3, Q9NEH9, Q9W4Z3
Entry history
Integrated into UniProtKB/Swiss-Prot: July 1, 1989
Last sequence update: November 4, 2008
Last modified: May 1, 2013
This is version 142 of the entry and version 5 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programDrosophila annotation project

Relevant documents

Drosophila

Drosophila: entries, gene names and cross-references to FlyBase

SIMILARITY comments

Index of protein domains and families