P11346 (KRAF1_DROME) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 142.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Raf homolog serine/threonine-protein kinase phl Short name=D-Raf Short name=dRAF-1 EC=2.7.11.1 Alternative name(s): Protein pole-hole | ||||||
| Gene names |
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| Organism | Drosophila melanogaster (Fruit fly) [Reference proteome] | ||||||
| Taxonomic identifier | 7227 [NCBI] | ||||||
| Taxonomic lineage | Eukaryota › Metazoa › Ecdysozoa › Arthropoda › Hexapoda › Insecta › Pterygota › Neoptera › Endopterygota › Diptera › Brachycera › Muscomorpha › Ephydroidea › Drosophilidae › Drosophila › Sophophora › ![]() |
Protein attributes
| Sequence length | 782 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Serine/threonine kinase required in the early embryo for the formation of terminal structure. Also required during the proliferation of imaginal cells. May act downstream of ras1 in the sev signal transduction pathway. Ref.1 Ref.8 |
| Catalytic activity | ATP + a protein = ADP + a phosphoprotein. |
| Cofactor | Binds 2 zinc ions per subunit By similarity. |
| Developmental stage | Expressed both maternally and zygotically. Zygotically expressed throughout embryogenesis. Ref.1 Ref.8 |
| Post-translational modification | Extensively phosphorylated 1 to 2 hours after egg laying. Ref.8 |
| Sequence similarities | Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. RAF subfamily. Contains 1 phorbol-ester/DAG-type zinc finger. Contains 1 protein kinase domain. Contains 1 RBD (Ras-binding) domain. |
| Sequence caution | The sequence CAA30166.1 differs from that shown. Reason: Erroneous gene model prediction. The sequence CAB72239.1 differs from that shown. Reason: Erroneous gene model prediction. |
Ontologies
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform B (identifier: P11346-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform A (identifier: P11346-2) Also known as: C; The sequence of this isoform differs from the canonical sequence as follows: 55-97: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 782 | 782 | Raf homolog serine/threonine-protein kinase phl | PRO_0000086194 | |||||
Regions | |||||||||
| Domain | 184 – 255 | 72 | RBD | ||||||
| Domain | 472 – 733 | 262 | Protein kinase | ||||||
| Zinc finger | 265 – 311 | 47 | Phorbol-ester/DAG-type | ||||||
| Nucleotide binding | 478 – 486 | 9 | ATP By similarity | ||||||
| Compositional bias | 346 – 370 | 25 | Ser-rich | ||||||
Sites | |||||||||
| Active site | 591 | 1 | Proton acceptor By similarity | ||||||
| Metal binding | 263 | 1 | Zinc 1 By similarity | ||||||
| Metal binding | 279 | 1 | Zinc 2 By similarity | ||||||
| Metal binding | 282 | 1 | Zinc 2 By similarity | ||||||
| Metal binding | 292 | 1 | Zinc 1 By similarity | ||||||
| Metal binding | 295 | 1 | Zinc 1 By similarity | ||||||
| Metal binding | 300 | 1 | Zinc 2 By similarity | ||||||
| Metal binding | 303 | 1 | Zinc 2 By similarity | ||||||
| Metal binding | 311 | 1 | Zinc 1 By similarity | ||||||
| Binding site | 498 | 1 | ATP By similarity | ||||||
Amino acid modifications | |||||||||
| Modified residue | 389 | 1 | Phosphoserine Ref.9 | ||||||
Natural variations | |||||||||
| Alternative sequence | 55 – 97 | 43 | Missing in isoform A. | VSP_035659 | |||||
| Natural variant | 365 | 1 | P → L in strain: AA1. Ref.6 | ||||||
| Natural variant | 370 | 1 | S → T in strain: KLH4 and KLH6. Ref.6 | ||||||
| Natural variant | 403 | 1 | S → R in strain: Reids2. Ref.6 | ||||||
| Natural variant | 508 | 1 | A → T in strain: 5-17-88b#5. | ||||||
Experimental info | |||||||||
| Sequence conflict | 161 | 1 | N → T in CAA30166. Ref.1 | ||||||
| Sequence conflict | 496 | 1 | A → P in CAA30166. Ref.1 | ||||||
| Sequence conflict | 521 – 523 | 3 | KKT → RKA in M16598. Ref.7 | ||||||
| Sequence conflict | 572 | 1 | G → R in M16598. Ref.7 | ||||||
| Sequence conflict | 701 – 704 | 4 | PQAL → RRHS in CAA30166. Ref.1 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Proliferation of both somatic and germ cells is affected in the Drosophila mutants of raf proto-oncogene." Nishida Y., Hata M., Ayaki T., Ryo H., Yamagata M., Shimizu K., Nishizuka Y. EMBO J. 7:775-781(1988) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], FUNCTION, DEVELOPMENTAL STAGE. |
| [2] | "The genome sequence of Drosophila melanogaster." Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D. Venter J.C.Science 287:2185-2195(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Berkeley. |
| [3] | "Annotation of the Drosophila melanogaster euchromatic genome: a systematic review." Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S., Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E., Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P., Bettencourt B.R., Celniker S.E., de Grey A.D.N.J. Lewis S.E.Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002) [PubMed] [Europe PMC] [Abstract] Cited for: GENOME REANNOTATION, ALTERNATIVE SPLICING. Strain: Berkeley. |
| [4] | "From sequence to chromosome: the tip of the X chromosome of D. melanogaster." Benos P.V., Gatt M.K., Ashburner M., Murphy L., Harris D., Barrell B.G., Ferraz C., Vidal S., Brun C., Demailles J., Cadieu E., Dreano S., Gloux S., Lelaure V., Mottier S., Galibert F., Borkova D., Minana B. Glover D.M.Science 287:2220-2222(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Oregon-R. |
| [5] | "A Drosophila full-length cDNA resource." Stapleton M., Carlson J.W., Brokstein P., Yu C., Champe M., George R.A., Guarin H., Kronmiller B., Pacleb J.M., Park S., Wan K.H., Rubin G.M., Celniker S.E. Genome Biol. 3:RESEARCH0080.1-RESEARCH0080.8(2002) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM A). Strain: Berkeley. Tissue: Head. |
| [6] | "Contrasting selection pressures on components of the Ras-mediated signal transduction pathway in Drosophila." Riley R.M., Jin W., Gibson G. Mol. Ecol. 12:1315-1323(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 108-782, VARIANTS LEU-365; THR-370; ARG-403 AND THR-508. Strain: 5-17-88b#5, AA1, AA16, AA18, AA20, AA3, AM2, CA2, G5b, JS, KK1, KK2, KK3, KK4, KKb2, KLGC5, KLH4, KLH6, KM1, KMb1, PYR2 and Reids2. |
| [7] | "Drosophila melanogaster homologs of the raf oncogene." Mark G.E., Macintyre R.J., Digan M.E., Ambrosio L., Perrimon N. Mol. Cell. Biol. 7:2134-2140(1987) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 466-754. |
| [8] | "Biochemical analysis of torso and D-raf during Drosophila embryogenesis: implications for terminal signal transduction." Sprenger F., Torsoclair M.M., Morrison D.K. Mol. Cell. Biol. 13:1163-1172(1993) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, DEVELOPMENTAL STAGE, PHOSPHORYLATION. |
| [9] | "Phosphoproteome analysis of Drosophila melanogaster embryos." Zhai B., Villen J., Beausoleil S.A., Mintseris J., Gygi S.P. J. Proteome Res. 7:1675-1682(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-389, MASS SPECTROMETRY. Tissue: Embryo. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | X07181 Genomic DNA. Translation: CAA30166.1. Sequence problems. AE014298 Genomic DNA. Translation: AAF45774.1. AE014298 Genomic DNA. Translation: ABI30965.1. AE014298 Genomic DNA. Translation: ABW09328.1. AL133503 Genomic DNA. Translation: CAB72239.1. Sequence problems. AY089490 mRNA. Translation: AAL90228.1. AY135031 Genomic DNA. Translation: AAN17541.1. AY135032 Genomic DNA. Translation: AAN17542.1. AY135033 Genomic DNA. Translation: AAN17543.1. AY135034 Genomic DNA. Translation: AAN17544.1. AY135035 Genomic DNA. Translation: AAN17545.1. AY135036 Genomic DNA. Translation: AAN17546.1. AY135037 Genomic DNA. Translation: AAN17547.1. AY135038 Genomic DNA. Translation: AAN17548.1. AY135039 Genomic DNA. Translation: AAN17549.1. AY135040 Genomic DNA. Translation: AAN17550.1. AY135041 Genomic DNA. Translation: AAN17551.1. AY135042 Genomic DNA. Translation: AAN17552.1. AY135043 Genomic DNA. Translation: AAN17553.1. AY135044 Genomic DNA. Translation: AAN17554.1. AY135045 Genomic DNA. Translation: AAN17555.1. AY135046 Genomic DNA. Translation: AAN17556.1. AY135047 Genomic DNA. Translation: AAN17557.1. AY135048 Genomic DNA. Translation: AAN17558.1. AY135049 Genomic DNA. Translation: AAN17559.1. AY135050 Genomic DNA. Translation: AAN17560.1. AY135051 Genomic DNA. Translation: AAN17561.1. AY135052 Genomic DNA. Translation: AAN17562.1. M16598 Genomic DNA. No translation available. |
| PIR | TVFFDF. S00393. |
| RefSeq | NP_001036258.1. NM_001042793.2. NP_001096867.2. NM_001103397.2. NP_525047.1. NM_080308.3. |
| UniGene | Dm.39. |
3D structure databases | |
| ProteinModelPortal | P11346. |
| SMR | P11346. Positions 186-256, 266-311, 420-764. |
| ModBase | Search... |
Protein-protein interaction databases | |
| DIP | DIP-29769N. |
| IntAct | P11346. 2 interactions. |
| MINT | MINT-296874. |
Proteomic databases | |
| PaxDb | P11346. |
| PRIDE | P11346. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| EnsemblMetazoa | FBtr0111025; FBpp0110324; FBgn0003079. FBtr0333812; FBpp0305946; FBgn0003079. |
| GeneID | 31221. |
| KEGG | dme:Dmel_CG2845. |
Organism-specific databases | |
| CTD | 31221. |
| FlyBase | FBgn0003079. phl. |
Phylogenomic databases | |
| eggNOG | COG0515. |
| GeneTree | ENSGT00680000099647. |
| InParanoid | P11346. |
| KO | K02644. |
| OMA | LFTGFYC. |
| OrthoDB | EOG49ZW49. |
| PhylomeDB | P11346. |
Enzyme and pathway databases | |
| BRENDA | 2.7.10.2. 1994. |
Gene expression databases | |
| Bgee | P11346. |
| GermOnline | CG2845. Drosophila melanogaster. |
Family and domain databases | |
| InterPro | IPR011009. Kinase-like_dom. IPR002219. Prot_Kinase_C-like_PE/DAG-bd. IPR000719. Prot_kinase_cat_dom. IPR017441. Protein_kinase_ATP_BS. IPR003116. Raf-like_ras-bd. IPR001245. Ser-Thr/Tyr_kinase_cat_dom. IPR008271. Ser/Thr_kinase_AS. [Graphical view] |
| Pfam | PF00130. C1_1. 1 hit. PF07714. Pkinase_Tyr. 1 hit. PF02196. RBD. 1 hit. [Graphical view] |
| SMART | SM00109. C1. 1 hit. SM00455. RBD. 1 hit. [Graphical view] |
| SUPFAM | SSF56112. Kinase_like. 1 hit. |
| PROSITE | PS00107. PROTEIN_KINASE_ATP. 1 hit. PS50011. PROTEIN_KINASE_DOM. 1 hit. PS00108. PROTEIN_KINASE_ST. 1 hit. PS50898. RBD. 1 hit. PS00479. ZF_DAG_PE_1. 1 hit. PS50081. ZF_DAG_PE_2. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| GenomeRNAi | 31221. |
| NextBio | 772524. |
Entry information
| Entry name | KRAF1_DROME | ||||||||
| Accession | Primary (citable) accession number: P11346 Secondary accession number(s): A8JUV5 Q9W4Z3 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Drosophila annotation project | ||||||||
Relevant documents
| Drosophila Drosophila: entries, gene names and cross-references to FlyBase |
| SIMILARITY comments Index of protein domains and families |

Clusters with
