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Protein

Uncharacterized glycosyltransferase YibD

Gene

yibD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

  • glucuronosyltransferase activity Source: EcoCyc

GO - Biological processi

  • cellular response to phosphate starvation Source: EcoCyc
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Enzyme and pathway databases

BioCyciEcoCyc:EG11266-MONOMER.
ECOL316407:JW3590-MONOMER.
MetaCyc:EG11266-MONOMER.

Protein family/group databases

CAZyiGT2. Glycosyltransferase Family 2.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized glycosyltransferase YibD (EC:2.4.-.-)
Gene namesi
Name:yibD
Ordered Locus Names:b3615, JW3590
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11266. yibD.

Subcellular locationi

GO - Cellular componenti

  • membrane Source: EcoCyc
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000592381 – 344Uncharacterized glycosyltransferase YibDAdd BLAST344

Proteomic databases

PaxDbiP11290.
PRIDEiP11290.

Interactioni

Protein-protein interaction databases

BioGridi4263308. 102 interactors.
IntActiP11290. 4 interactors.
STRINGi511145.b3615.

Structurei

3D structure databases

ProteinModelPortaliP11290.
SMRiP11290.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyltransferase 2 family.Curated

Phylogenomic databases

eggNOGiENOG4105K64. Bacteria.
COG0463. LUCA.
HOGENOMiHOG000126147.
InParanoidiP11290.
KOiK19354.
OMAiMRSARHY.
PhylomeDBiP11290.

Family and domain databases

Gene3Di3.90.550.10. 1 hit.
InterProiIPR001173. Glyco_trans_2-like.
IPR029044. Nucleotide-diphossugar_trans.
[Graphical view]
PfamiPF00535. Glycos_transf_2. 1 hit.
[Graphical view]
SUPFAMiSSF53448. SSF53448. 1 hit.

Sequencei

Sequence statusi: Complete.

P11290-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMNSTNKLSV IIPLYNAGDD FRTCMESLIT QTWTALEIII INDGSTDNSV
60 70 80 90 100
EIAKYYAENY PHVRLLHQAN AGASVARNRG IEVATGKYVA FVDADDEVYP
110 120 130 140 150
TMYETLMTMA LEDDLDVAQC NADWCFRETG ETWQSIPTDR LRSTGVLTGP
160 170 180 190 200
DWLRMGLSSR RWTHVVWMGV YRRDVIVKNN IKFIAGLHHQ DIVWTTEFMF
210 220 230 240 250
NALRARYTEQ SLYKYYLHNT SVSRLHRQGN KNLNYQRHYI KITRLLEKLN
260 270 280 290 300
RNYADKIMIY PEFHQQITYE ALRVCHAVRK EPDILTRQRM IAEIFTSGMY
310 320 330 340
KRLITNVRSV KVGYQALLWS FRLWQWRDKT RSHHRITRSA FNLR
Length:344
Mass (Da):40,524
Last modified:October 1, 1994 - v2
Checksum:i9B5DABFE86D5457A
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti1 – 26MMNST…RTCME → MRAMISALVWK in CAA29885 (PubMed:2647748).CuratedAdd BLAST26
Sequence conflicti77R → G in CAA29885 (PubMed:2647748).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00039 Genomic DNA. Translation: AAB18592.1.
U00096 Genomic DNA. Translation: AAC76639.1.
AP009048 Genomic DNA. Translation: BAE77677.1.
X06690 Genomic DNA. Translation: CAA29885.1.
PIRiS47836. Q3ECTH.
RefSeqiNP_418072.1. NC_000913.3.
WP_000982115.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76639; AAC76639; b3615.
BAE77677; BAE77677; BAE77677.
GeneIDi948140.
KEGGiecj:JW3590.
eco:b3615.
PATRICi32122717. VBIEscCol129921_3735.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00039 Genomic DNA. Translation: AAB18592.1.
U00096 Genomic DNA. Translation: AAC76639.1.
AP009048 Genomic DNA. Translation: BAE77677.1.
X06690 Genomic DNA. Translation: CAA29885.1.
PIRiS47836. Q3ECTH.
RefSeqiNP_418072.1. NC_000913.3.
WP_000982115.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP11290.
SMRiP11290.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4263308. 102 interactors.
IntActiP11290. 4 interactors.
STRINGi511145.b3615.

Protein family/group databases

CAZyiGT2. Glycosyltransferase Family 2.

Proteomic databases

PaxDbiP11290.
PRIDEiP11290.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76639; AAC76639; b3615.
BAE77677; BAE77677; BAE77677.
GeneIDi948140.
KEGGiecj:JW3590.
eco:b3615.
PATRICi32122717. VBIEscCol129921_3735.

Organism-specific databases

EchoBASEiEB1245.
EcoGeneiEG11266. yibD.

Phylogenomic databases

eggNOGiENOG4105K64. Bacteria.
COG0463. LUCA.
HOGENOMiHOG000126147.
InParanoidiP11290.
KOiK19354.
OMAiMRSARHY.
PhylomeDBiP11290.

Enzyme and pathway databases

BioCyciEcoCyc:EG11266-MONOMER.
ECOL316407:JW3590-MONOMER.
MetaCyc:EG11266-MONOMER.

Miscellaneous databases

PROiP11290.

Family and domain databases

Gene3Di3.90.550.10. 1 hit.
InterProiIPR001173. Glyco_trans_2-like.
IPR029044. Nucleotide-diphossugar_trans.
[Graphical view]
PfamiPF00535. Glycos_transf_2. 1 hit.
[Graphical view]
SUPFAMiSSF53448. SSF53448. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYIBD_ECOLI
AccessioniPrimary (citable) accession number: P11290
Secondary accession number(s): P22999, Q2M7S9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 1989
Last sequence update: October 1, 1994
Last modified: November 2, 2016
This is version 117 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.