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Protein

Inner membrane protein YiaB

Gene

yiaB

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG11267-MONOMER.
ECOL316407:JW5654-MONOMER.

Protein family/group databases

TCDBi9.B.44.1.1. the yiaa-yiab (yiaab) family.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YiaB
Gene namesi
Name:yiaB
Ordered Locus Names:b3563, JW5654
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11267. yiaB.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 99CytoplasmicSequence analysis
Transmembranei10 – 2011HelicalSequence analysisAdd
BLAST
Topological domaini21 – 3313PeriplasmicSequence analysisAdd
BLAST
Transmembranei34 – 5118HelicalSequence analysisAdd
BLAST
Topological domaini52 – 6110CytoplasmicSequence analysis
Transmembranei62 – 8221HelicalSequence analysisAdd
BLAST
Topological domaini83 – 842PeriplasmicSequence analysis
Transmembranei85 – 10521HelicalSequence analysisAdd
BLAST
Topological domaini106 – 1138CytoplasmicSequence analysis

GO - Cellular componenti

  • integral component of plasma membrane Source: EcoliWiki
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 113113Inner membrane protein YiaBPRO_0000169589Add
BLAST

Proteomic databases

PaxDbiP11286.

Interactioni

Protein-protein interaction databases

BioGridi4262144. 8 interactions.
STRINGi511145.b3563.

Structurei

3D structure databases

ProteinModelPortaliP11286.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG410688U. Bacteria.
COG4682. LUCA.
HOGENOMiHOG000126047.
OMAiWREKSIY.
OrthoDBiEOG61KBK8.

Family and domain databases

InterProiIPR008024. YiaAB.
[Graphical view]
PfamiPF05360. YiaAB. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P11286-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKTSKTVAKL LFVVGALVYL VGLWISCPLL SGKGYFLGVL MTATFGNYAY
60 70 80 90 100
LRAEKLGQLD DFFTHICQLV ALITIGLLFI GVLNAPINTY EMVIYPIAFF
110
VCLFGQMRLF RSA
Length:113
Mass (Da):12,555
Last modified:December 4, 2007 - v3
Checksum:i7C431F03CDBAC073
GO

Sequence cautioni

The sequence AAB18540.1 differs from that shown. Reason: Erroneous initiation. Curated
The sequence CAA28396.1 differs from that shown. Reason: Erroneous initiation. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti77 – 771L → V in CAA28396 (PubMed:6320721).Curated
Sequence conflicti85 – 11329APINT…LFRSA → DLSILMKW in CAA28396 (PubMed:6320721).CuratedAdd
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X04691 Genomic DNA. Translation: CAA28396.1. Different initiation.
U00039 Genomic DNA. Translation: AAB18540.1. Different initiation.
U00096 Genomic DNA. Translation: AAC76587.2.
AP009048 Genomic DNA. Translation: BAE77730.1.
PIRiS47784. Q3ECX1.
RefSeqiNP_418020.2. NC_000913.3.
WP_001295228.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76587; AAC76587; b3563.
BAE77730; BAE77730; BAE77730.
GeneIDi948152.
KEGGiecj:JW5654.
eco:b3563.
PATRICi32122602. VBIEscCol129921_3678.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X04691 Genomic DNA. Translation: CAA28396.1. Different initiation.
U00039 Genomic DNA. Translation: AAB18540.1. Different initiation.
U00096 Genomic DNA. Translation: AAC76587.2.
AP009048 Genomic DNA. Translation: BAE77730.1.
PIRiS47784. Q3ECX1.
RefSeqiNP_418020.2. NC_000913.3.
WP_001295228.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP11286.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262144. 8 interactions.
STRINGi511145.b3563.

Protein family/group databases

TCDBi9.B.44.1.1. the yiaa-yiab (yiaab) family.

Proteomic databases

PaxDbiP11286.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76587; AAC76587; b3563.
BAE77730; BAE77730; BAE77730.
GeneIDi948152.
KEGGiecj:JW5654.
eco:b3563.
PATRICi32122602. VBIEscCol129921_3678.

Organism-specific databases

EchoBASEiEB1246.
EcoGeneiEG11267. yiaB.

Phylogenomic databases

eggNOGiENOG410688U. Bacteria.
COG4682. LUCA.
HOGENOMiHOG000126047.
OMAiWREKSIY.
OrthoDBiEOG61KBK8.

Enzyme and pathway databases

BioCyciEcoCyc:EG11267-MONOMER.
ECOL316407:JW5654-MONOMER.

Miscellaneous databases

PROiP11286.

Family and domain databases

InterProiIPR008024. YiaAB.
[Graphical view]
PfamiPF05360. YiaAB. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Cloning and sequencing of the xylose isomerase and xylulose kinase genes of Escherichia coli."
    Lawlis V.B., Dennis M.S., Chen E.Y., Smith D.H., Henner D.J.
    Appl. Environ. Microbiol. 47:15-21(1984) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: K12 / MM294 / ATCC 33625 / DSM 5208.
  2. "Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes."
    Sofia H.J., Burland V., Daniels D.L., Plunkett G. III, Blattner F.R.
    Nucleic Acids Res. 22:2576-2586(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  5. "Rapid topology mapping of Escherichia coli inner-membrane proteins by prediction and PhoA/GFP fusion analysis."
    Drew D., Sjoestrand D., Nilsson J., Urbig T., Chin C.-N., de Gier J.-W., von Heijne G.
    Proc. Natl. Acad. Sci. U.S.A. 99:2690-2695(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: TOPOLOGY.
    Strain: K12 / JM109 / ATCC 53323.
  6. "Global topology analysis of the Escherichia coli inner membrane proteome."
    Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.
    Science 308:1321-1323(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: TOPOLOGY [LARGE SCALE ANALYSIS].
    Strain: K12 / MG1655 / ATCC 47076.

Entry informationi

Entry nameiYIAB_ECOLI
AccessioniPrimary (citable) accession number: P11286
Secondary accession number(s): Q2M7M6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 1989
Last sequence update: December 4, 2007
Last modified: January 20, 2016
This is version 114 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.