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Protein

50S ribosomal protein L24P

Gene

rpl24p

Organism
Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.By similarity
Stabilizes the tertiary rRNA structure within the 23S rRNA domain (domain I) to which it binds. Located at the polypeptide exit tunnel on the outside of the subunit.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L24P
Alternative name(s):
Hl15
Hl16
Hmal24
Gene namesi
Name:rpl24p
Ordered Locus Names:rrnAC1601
OrganismiHaloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
Taxonomic identifieri272569 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaHalobacteriaHalobacterialesHalobacteriaceaeHaloarcula
Proteomesi
  • UP000001169 Componenti: Chromosome I

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved2 Publications
ChainiPRO_00001307672 – 12050S ribosomal protein L24PAdd BLAST119

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Interacts weakly with protein L4.2 Publications

Protein-protein interaction databases

STRINGi272569.rrnAC1601.

Structurei

Secondary structure

1120
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi5 – 13Combined sources9
Helixi17 – 19Combined sources3
Helixi21 – 24Combined sources4
Beta strandi25 – 28Combined sources4
Helixi30 – 36Combined sources7
Beta strandi39 – 42Combined sources4
Beta strandi48 – 51Combined sources4
Turni55 – 58Combined sources4
Beta strandi60 – 67Combined sources8
Turni68 – 71Combined sources4
Beta strandi72 – 75Combined sources4
Beta strandi79 – 81Combined sources3
Beta strandi83 – 85Combined sources3
Beta strandi87 – 89Combined sources3
Helixi94 – 96Combined sources3
Beta strandi97 – 101Combined sources5
Helixi107 – 114Combined sources8
Beta strandi116 – 118Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1FFKX-ray2.40Q2-120[»]
1JJ2X-ray2.40S2-120[»]
1K73X-ray3.01U2-120[»]
1K8AX-ray3.00U2-120[»]
1K9MX-ray3.00U2-120[»]
1KC8X-ray3.01U2-120[»]
1KD1X-ray3.00U2-120[»]
1KQSX-ray3.10S2-120[»]
1M1KX-ray3.20U2-120[»]
1M90X-ray2.80U2-120[»]
1N8RX-ray3.00U2-120[»]
1NJIX-ray3.00U2-120[»]
1Q7YX-ray3.20U2-120[»]
1Q81X-ray2.95U2-120[»]
1Q82X-ray2.98U2-120[»]
1Q86X-ray3.00U2-120[»]
1QVFX-ray3.10S2-120[»]
1QVGX-ray2.90S2-120[»]
1S72X-ray2.40T1-120[»]
1VQ4X-ray2.70T1-120[»]
1VQ5X-ray2.60T1-120[»]
1VQ6X-ray2.70T1-120[»]
1VQ7X-ray2.50T1-120[»]
1VQ8X-ray2.20T1-120[»]
1VQ9X-ray2.40T1-120[»]
1VQKX-ray2.30T1-120[»]
1VQLX-ray2.30T1-120[»]
1VQMX-ray2.30T1-120[»]
1VQNX-ray2.40T1-120[»]
1VQOX-ray2.20T1-120[»]
1VQPX-ray2.25T1-120[»]
1W2BX-ray3.50S2-120[»]
1YHQX-ray2.40T1-120[»]
1YI2X-ray2.65T1-120[»]
1YIJX-ray2.60T1-120[»]
1YITX-ray2.80T1-120[»]
1YJ9X-ray2.90T1-120[»]
1YJNX-ray3.00T1-120[»]
1YJWX-ray2.90T1-120[»]
2OTJX-ray2.90T1-120[»]
2OTLX-ray2.70T1-120[»]
2QA4X-ray3.00T1-120[»]
2QEXX-ray2.90T1-120[»]
3CC2X-ray2.40T1-120[»]
3CC4X-ray2.70T1-120[»]
3CC7X-ray2.70T1-120[»]
3CCEX-ray2.75T1-120[»]
3CCJX-ray2.70T1-120[»]
3CCLX-ray2.90T1-120[»]
3CCMX-ray2.55T1-120[»]
3CCQX-ray2.90T1-120[»]
3CCRX-ray3.00T1-120[»]
3CCSX-ray2.95T1-120[»]
3CCUX-ray2.80T1-120[»]
3CCVX-ray2.90T1-120[»]
3CD6X-ray2.75T1-120[»]
3CMAX-ray2.80T1-120[»]
3CMEX-ray2.95T1-120[»]
3CPWX-ray2.70S1-120[»]
3CXCX-ray3.00S2-120[»]
3G4SX-ray3.20T2-120[»]
3G6EX-ray2.70T2-120[»]
3G71X-ray2.85T2-120[»]
3I55X-ray3.11T1-120[»]
3I56X-ray2.90T1-120[»]
3OW2X-ray2.70S2-120[»]
4ADXelectron microscopy6.60T1-120[»]
4V4RX-ray5.90Y2-120[»]
4V4TX-ray6.46Y2-120[»]
4V9FX-ray2.40T1-120[»]
ProteinModelPortaliP10972.
SMRiP10972.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP10972.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L24P family.Curated

Phylogenomic databases

eggNOGiarCOG04094. Archaea.
COG0198. LUCA.
HOGENOMiHOG000216571.
KOiK02895.
OMAiVRIMRGD.

Family and domain databases

Gene3Di2.30.30.30. 1 hit.
HAMAPiMF_01326_A. Ribosomal_L24_A. 1 hit.
InterProiIPR005824. KOW.
IPR014722. Rib_L2_dom2.
IPR005825. Ribosomal_L24/26_CS.
IPR005756. Ribosomal_L26/L24P_euk/arc.
IPR008991. Translation_prot_SH3-like.
[Graphical view]
PANTHERiPTHR11143. PTHR11143. 1 hit.
PfamiPF00467. KOW. 1 hit.
PF16906. Ribosomal_L26. 1 hit.
[Graphical view]
SMARTiSM00739. KOW. 1 hit.
[Graphical view]
SUPFAMiSSF50104. SSF50104. 1 hit.
TIGRFAMsiTIGR01080. rplX_A_E. 1 hit.
PROSITEiPS01108. RIBOSOMAL_L24. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P10972-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKQPDKQRK SQRRAPLHER HKQVRATLSA DLREEYGQRN VRVNAGDTVE
60 70 80 90 100
VLRGDFAGEE GEVINVDLDK AVIHVEDVTL EKTDGEEVPR PLDTSNVRVT
110 120
DLDLEDEKRE ARLESEDDSA
Length:120
Mass (Da):13,648
Last modified:January 23, 2007 - v3
Checksum:iBDEEF21DE1587096
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti21H → R AA sequence (PubMed:3191994).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X55311 Genomic DNA. Translation: CAA39019.1.
AY596297 Genomic DNA. Translation: AAV46518.1.
PIRiS10735. R5HS24.
RefSeqiWP_004957398.1. NC_006396.1.

Genome annotation databases

EnsemblBacteriaiAAV46518; AAV46518; rrnAC1601.
GeneIDi3128440.
KEGGihma:rrnAC1601.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X55311 Genomic DNA. Translation: CAA39019.1.
AY596297 Genomic DNA. Translation: AAV46518.1.
PIRiS10735. R5HS24.
RefSeqiWP_004957398.1. NC_006396.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1FFKX-ray2.40Q2-120[»]
1JJ2X-ray2.40S2-120[»]
1K73X-ray3.01U2-120[»]
1K8AX-ray3.00U2-120[»]
1K9MX-ray3.00U2-120[»]
1KC8X-ray3.01U2-120[»]
1KD1X-ray3.00U2-120[»]
1KQSX-ray3.10S2-120[»]
1M1KX-ray3.20U2-120[»]
1M90X-ray2.80U2-120[»]
1N8RX-ray3.00U2-120[»]
1NJIX-ray3.00U2-120[»]
1Q7YX-ray3.20U2-120[»]
1Q81X-ray2.95U2-120[»]
1Q82X-ray2.98U2-120[»]
1Q86X-ray3.00U2-120[»]
1QVFX-ray3.10S2-120[»]
1QVGX-ray2.90S2-120[»]
1S72X-ray2.40T1-120[»]
1VQ4X-ray2.70T1-120[»]
1VQ5X-ray2.60T1-120[»]
1VQ6X-ray2.70T1-120[»]
1VQ7X-ray2.50T1-120[»]
1VQ8X-ray2.20T1-120[»]
1VQ9X-ray2.40T1-120[»]
1VQKX-ray2.30T1-120[»]
1VQLX-ray2.30T1-120[»]
1VQMX-ray2.30T1-120[»]
1VQNX-ray2.40T1-120[»]
1VQOX-ray2.20T1-120[»]
1VQPX-ray2.25T1-120[»]
1W2BX-ray3.50S2-120[»]
1YHQX-ray2.40T1-120[»]
1YI2X-ray2.65T1-120[»]
1YIJX-ray2.60T1-120[»]
1YITX-ray2.80T1-120[»]
1YJ9X-ray2.90T1-120[»]
1YJNX-ray3.00T1-120[»]
1YJWX-ray2.90T1-120[»]
2OTJX-ray2.90T1-120[»]
2OTLX-ray2.70T1-120[»]
2QA4X-ray3.00T1-120[»]
2QEXX-ray2.90T1-120[»]
3CC2X-ray2.40T1-120[»]
3CC4X-ray2.70T1-120[»]
3CC7X-ray2.70T1-120[»]
3CCEX-ray2.75T1-120[»]
3CCJX-ray2.70T1-120[»]
3CCLX-ray2.90T1-120[»]
3CCMX-ray2.55T1-120[»]
3CCQX-ray2.90T1-120[»]
3CCRX-ray3.00T1-120[»]
3CCSX-ray2.95T1-120[»]
3CCUX-ray2.80T1-120[»]
3CCVX-ray2.90T1-120[»]
3CD6X-ray2.75T1-120[»]
3CMAX-ray2.80T1-120[»]
3CMEX-ray2.95T1-120[»]
3CPWX-ray2.70S1-120[»]
3CXCX-ray3.00S2-120[»]
3G4SX-ray3.20T2-120[»]
3G6EX-ray2.70T2-120[»]
3G71X-ray2.85T2-120[»]
3I55X-ray3.11T1-120[»]
3I56X-ray2.90T1-120[»]
3OW2X-ray2.70S2-120[»]
4ADXelectron microscopy6.60T1-120[»]
4V4RX-ray5.90Y2-120[»]
4V4TX-ray6.46Y2-120[»]
4V9FX-ray2.40T1-120[»]
ProteinModelPortaliP10972.
SMRiP10972.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272569.rrnAC1601.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAV46518; AAV46518; rrnAC1601.
GeneIDi3128440.
KEGGihma:rrnAC1601.

Phylogenomic databases

eggNOGiarCOG04094. Archaea.
COG0198. LUCA.
HOGENOMiHOG000216571.
KOiK02895.
OMAiVRIMRGD.

Miscellaneous databases

EvolutionaryTraceiP10972.

Family and domain databases

Gene3Di2.30.30.30. 1 hit.
HAMAPiMF_01326_A. Ribosomal_L24_A. 1 hit.
InterProiIPR005824. KOW.
IPR014722. Rib_L2_dom2.
IPR005825. Ribosomal_L24/26_CS.
IPR005756. Ribosomal_L26/L24P_euk/arc.
IPR008991. Translation_prot_SH3-like.
[Graphical view]
PANTHERiPTHR11143. PTHR11143. 1 hit.
PfamiPF00467. KOW. 1 hit.
PF16906. Ribosomal_L26. 1 hit.
[Graphical view]
SMARTiSM00739. KOW. 1 hit.
[Graphical view]
SUPFAMiSSF50104. SSF50104. 1 hit.
TIGRFAMsiTIGR01080. rplX_A_E. 1 hit.
PROSITEiPS01108. RIBOSOMAL_L24. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL24_HALMA
AccessioniPrimary (citable) accession number: P10972
Secondary accession number(s): Q5V1T4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 1989
Last sequence update: January 23, 2007
Last modified: November 2, 2016
This is version 133 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.