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P10971

- RL29_HALMA

UniProt

P10971 - RL29_HALMA

Protein

50S ribosomal protein L29P

Gene

rpl29p

Organism
Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
  1. Functioni

    Stabilizes the tertiary rRNA structure within the 23S rRNA domain (domain I) to which it binds. Located at the polypeptide exit tunnel on the outside of the subunit.

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-KW
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    BioCyciHMAR272569:GJDH-1460-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L29P
    Alternative name(s):
    Hl33
    Hmal29
    Gene namesi
    Name:rpl29p
    Ordered Locus Names:rrnAC1604
    OrganismiHaloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
    Taxonomic identifieri272569 [NCBI]
    Taxonomic lineageiArchaeaEuryarchaeotaHalobacteriaHalobacterialesHalobacteriaceaeHaloarcula
    ProteomesiUP000001169: Chromosome I

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11Removed1 Publication
    Chaini2 – 717050S ribosomal protein L29PPRO_0000130508Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit. Interacts with protein L23.2 Publications

    Protein-protein interaction databases

    STRINGi272569.rrnAC1604.

    Structurei

    Secondary structure

    1
    71
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Helixi6 – 116
    Helixi14 – 3623
    Helixi44 – 6421

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1FFKX-ray2.40S2-71[»]
    1JJ2X-ray2.40U2-71[»]
    1K73X-ray3.01W2-71[»]
    1K8AX-ray3.00W2-71[»]
    1K9MX-ray3.00W2-71[»]
    1KC8X-ray3.01W2-71[»]
    1KD1X-ray3.00W2-71[»]
    1KQSX-ray3.10U2-71[»]
    1M1KX-ray3.20W2-71[»]
    1M90X-ray2.80W2-71[»]
    1N8RX-ray3.00W2-71[»]
    1NJIX-ray3.00W2-71[»]
    1Q7YX-ray3.20W2-71[»]
    1Q81X-ray2.95W2-71[»]
    1Q82X-ray2.98W2-71[»]
    1Q86X-ray3.00W2-71[»]
    1QVFX-ray3.10U2-71[»]
    1QVGX-ray2.90U2-71[»]
    1S72X-ray2.40V1-71[»]
    1VQ4X-ray2.70V1-71[»]
    1VQ5X-ray2.60V1-71[»]
    1VQ6X-ray2.70V1-71[»]
    1VQ7X-ray2.50V1-71[»]
    1VQ8X-ray2.20V1-71[»]
    1VQ9X-ray2.40V1-71[»]
    1VQKX-ray2.30V1-71[»]
    1VQLX-ray2.30V1-71[»]
    1VQMX-ray2.30V1-71[»]
    1VQNX-ray2.40V1-71[»]
    1VQOX-ray2.20V1-71[»]
    1VQPX-ray2.25V1-71[»]
    1W2BX-ray3.50U2-71[»]
    1YHQX-ray2.40V1-71[»]
    1YI2X-ray2.65V1-71[»]
    1YIJX-ray2.60V1-71[»]
    1YITX-ray2.80V1-71[»]
    1YJ9X-ray2.90V1-71[»]
    1YJNX-ray3.00V1-71[»]
    1YJWX-ray2.90V1-71[»]
    2B66X-ray5.9022-71[»]
    2B9NX-ray6.7622-71[»]
    2B9PX-ray6.4622-71[»]
    2OTJX-ray2.90V1-71[»]
    2OTLX-ray2.70V1-71[»]
    2QA4X-ray3.00V1-71[»]
    2QEXX-ray2.90V1-71[»]
    3CC2X-ray2.40V1-71[»]
    3CC4X-ray2.70V1-71[»]
    3CC7X-ray2.70V1-71[»]
    3CCEX-ray2.75V1-71[»]
    3CCJX-ray2.70V1-71[»]
    3CCLX-ray2.90V1-71[»]
    3CCMX-ray2.55V1-71[»]
    3CCQX-ray2.90V1-71[»]
    3CCRX-ray3.00V1-71[»]
    3CCSX-ray2.95V1-71[»]
    3CCUX-ray2.80V1-71[»]
    3CCVX-ray2.90V1-71[»]
    3CD6X-ray2.75V1-71[»]
    3CMAX-ray2.80V1-71[»]
    3CMEX-ray2.95V1-71[»]
    3CPWX-ray2.70U1-71[»]
    3CXCX-ray3.00U2-71[»]
    3G4SX-ray3.20V2-66[»]
    3G6EX-ray2.70V2-66[»]
    3G71X-ray2.85V2-66[»]
    3I55X-ray3.11V1-71[»]
    3I56X-ray2.90V1-71[»]
    3OW2X-ray2.70U2-66[»]
    4ADXelectron microscopy6.60V1-71[»]
    4HUBX-ray2.40V1-71[»]
    ProteinModelPortaliP10971.
    SMRiP10971. Positions 2-66.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiP10971.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L29P family.Curated

    Phylogenomic databases

    eggNOGiCOG0255.
    HOGENOMiHOG000248755.
    KOiK02904.
    OMAiNPGRMRE.

    Family and domain databases

    Gene3Di1.10.287.310. 1 hit.
    HAMAPiMF_00374. Ribosomal_L29.
    InterProiIPR001854. Ribosomal_L29.
    IPR018254. Ribosomal_L29_CS.
    [Graphical view]
    PfamiPF00831. Ribosomal_L29. 1 hit.
    [Graphical view]
    SUPFAMiSSF46561. SSF46561. 1 hit.
    TIGRFAMsiTIGR00012. L29. 1 hit.
    PROSITEiPS00579. RIBOSOMAL_L29. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P10971-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTVLHVQEIR DMTPAEREAE LDDLKTELLN ARAVQAAGGA PENPGRIKEL   50
    RKAIARIKTI QGEEGDLQEN E 71
    Length:71
    Mass (Da):7,879
    Last modified:January 23, 2007 - v3
    Checksum:i31779CA339CC699A
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    J05222 Genomic DNA. Translation: AAA86866.1.
    AY596297 Genomic DNA. Translation: AAV46521.1.
    X55311 Genomic DNA. Translation: CAA39015.1.
    PIRiA35064. R5HS29.
    T46794.
    RefSeqiYP_136227.1. NC_006396.1.

    Genome annotation databases

    EnsemblBacteriaiAAV46521; AAV46521; rrnAC1604.
    GeneIDi3128342.
    KEGGihma:rrnAC1604.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    J05222 Genomic DNA. Translation: AAA86866.1 .
    AY596297 Genomic DNA. Translation: AAV46521.1 .
    X55311 Genomic DNA. Translation: CAA39015.1 .
    PIRi A35064. R5HS29.
    T46794.
    RefSeqi YP_136227.1. NC_006396.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1FFK X-ray 2.40 S 2-71 [» ]
    1JJ2 X-ray 2.40 U 2-71 [» ]
    1K73 X-ray 3.01 W 2-71 [» ]
    1K8A X-ray 3.00 W 2-71 [» ]
    1K9M X-ray 3.00 W 2-71 [» ]
    1KC8 X-ray 3.01 W 2-71 [» ]
    1KD1 X-ray 3.00 W 2-71 [» ]
    1KQS X-ray 3.10 U 2-71 [» ]
    1M1K X-ray 3.20 W 2-71 [» ]
    1M90 X-ray 2.80 W 2-71 [» ]
    1N8R X-ray 3.00 W 2-71 [» ]
    1NJI X-ray 3.00 W 2-71 [» ]
    1Q7Y X-ray 3.20 W 2-71 [» ]
    1Q81 X-ray 2.95 W 2-71 [» ]
    1Q82 X-ray 2.98 W 2-71 [» ]
    1Q86 X-ray 3.00 W 2-71 [» ]
    1QVF X-ray 3.10 U 2-71 [» ]
    1QVG X-ray 2.90 U 2-71 [» ]
    1S72 X-ray 2.40 V 1-71 [» ]
    1VQ4 X-ray 2.70 V 1-71 [» ]
    1VQ5 X-ray 2.60 V 1-71 [» ]
    1VQ6 X-ray 2.70 V 1-71 [» ]
    1VQ7 X-ray 2.50 V 1-71 [» ]
    1VQ8 X-ray 2.20 V 1-71 [» ]
    1VQ9 X-ray 2.40 V 1-71 [» ]
    1VQK X-ray 2.30 V 1-71 [» ]
    1VQL X-ray 2.30 V 1-71 [» ]
    1VQM X-ray 2.30 V 1-71 [» ]
    1VQN X-ray 2.40 V 1-71 [» ]
    1VQO X-ray 2.20 V 1-71 [» ]
    1VQP X-ray 2.25 V 1-71 [» ]
    1W2B X-ray 3.50 U 2-71 [» ]
    1YHQ X-ray 2.40 V 1-71 [» ]
    1YI2 X-ray 2.65 V 1-71 [» ]
    1YIJ X-ray 2.60 V 1-71 [» ]
    1YIT X-ray 2.80 V 1-71 [» ]
    1YJ9 X-ray 2.90 V 1-71 [» ]
    1YJN X-ray 3.00 V 1-71 [» ]
    1YJW X-ray 2.90 V 1-71 [» ]
    2B66 X-ray 5.90 2 2-71 [» ]
    2B9N X-ray 6.76 2 2-71 [» ]
    2B9P X-ray 6.46 2 2-71 [» ]
    2OTJ X-ray 2.90 V 1-71 [» ]
    2OTL X-ray 2.70 V 1-71 [» ]
    2QA4 X-ray 3.00 V 1-71 [» ]
    2QEX X-ray 2.90 V 1-71 [» ]
    3CC2 X-ray 2.40 V 1-71 [» ]
    3CC4 X-ray 2.70 V 1-71 [» ]
    3CC7 X-ray 2.70 V 1-71 [» ]
    3CCE X-ray 2.75 V 1-71 [» ]
    3CCJ X-ray 2.70 V 1-71 [» ]
    3CCL X-ray 2.90 V 1-71 [» ]
    3CCM X-ray 2.55 V 1-71 [» ]
    3CCQ X-ray 2.90 V 1-71 [» ]
    3CCR X-ray 3.00 V 1-71 [» ]
    3CCS X-ray 2.95 V 1-71 [» ]
    3CCU X-ray 2.80 V 1-71 [» ]
    3CCV X-ray 2.90 V 1-71 [» ]
    3CD6 X-ray 2.75 V 1-71 [» ]
    3CMA X-ray 2.80 V 1-71 [» ]
    3CME X-ray 2.95 V 1-71 [» ]
    3CPW X-ray 2.70 U 1-71 [» ]
    3CXC X-ray 3.00 U 2-71 [» ]
    3G4S X-ray 3.20 V 2-66 [» ]
    3G6E X-ray 2.70 V 2-66 [» ]
    3G71 X-ray 2.85 V 2-66 [» ]
    3I55 X-ray 3.11 V 1-71 [» ]
    3I56 X-ray 2.90 V 1-71 [» ]
    3OW2 X-ray 2.70 U 2-66 [» ]
    4ADX electron microscopy 6.60 V 1-71 [» ]
    4HUB X-ray 2.40 V 1-71 [» ]
    ProteinModelPortali P10971.
    SMRi P10971. Positions 2-66.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 272569.rrnAC1604.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAV46521 ; AAV46521 ; rrnAC1604 .
    GeneIDi 3128342.
    KEGGi hma:rrnAC1604.

    Phylogenomic databases

    eggNOGi COG0255.
    HOGENOMi HOG000248755.
    KOi K02904.
    OMAi NPGRMRE.

    Enzyme and pathway databases

    BioCyci HMAR272569:GJDH-1460-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei P10971.

    Family and domain databases

    Gene3Di 1.10.287.310. 1 hit.
    HAMAPi MF_00374. Ribosomal_L29.
    InterProi IPR001854. Ribosomal_L29.
    IPR018254. Ribosomal_L29_CS.
    [Graphical view ]
    Pfami PF00831. Ribosomal_L29. 1 hit.
    [Graphical view ]
    SUPFAMi SSF46561. SSF46561. 1 hit.
    TIGRFAMsi TIGR00012. L29. 1 hit.
    PROSITEi PS00579. RIBOSOMAL_L29. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Organization and nucleotide sequence of a gene cluster coding for eight ribosomal proteins in the archaebacterium Halobacterium marismortui."
      Arndt E., Kroemer W., Hatakeyama T.
      J. Biol. Chem. 265:3034-3039(1990) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809.
    3. "The primary structures of ribosomal proteins L16, L23 and L33 from the archaebacterium Halobacterium marismortui."
      Hatakeyama T., Hatakeyama T., Kimura M.
      FEBS Lett. 240:21-28(1988) [PubMed] [Europe PMC] [Abstract]
      Cited for: PROTEIN SEQUENCE OF 2-70.
    4. "Nucleotide sequence of four genes encoding ribosomal proteins from the 'S10 and spectinomycin' operon equivalent region in the archaebacterium Halobacterium marismortui."
      Arndt E.
      FEBS Lett. 267:193-198(1990) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 60-71.
    5. "The complete atomic structure of the large ribosomal subunit at 2.4 A resolution."
      Ban N., Nissen P., Hansen J., Moore P.B., Steitz T.A.
      Science 289:905-920(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (2.4 ANGSTROMS) OF THE 50S SUBUNIT.
      Strain: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809.
    6. "The structural basis of ribosome activity in peptide bond synthesis."
      Nissen P., Hansen J., Ban N., Moore P.B., Steitz T.A.
      Science 289:920-930(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (3.0 ANGSTROMS) OF THE 50S SUBUNIT.
      Strain: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809.
    7. "A pre-translocational intermediate in protein synthesis observed in crystals of enzymatically active 50S subunits."
      Schmeing T.M., Seila A.C., Hansen J.L., Freeborn B., Soukup J.K., Scaringe S.A., Strobel S.A., Moore P.B., Steitz T.A.
      Nat. Struct. Biol. 9:225-230(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (3.1 ANGSTROMS) OF THE 50S SUBUNIT.
      Strain: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809.
    8. "The kink-turn: a new RNA secondary structure motif."
      Klein D.J., Schmeing T.M., Moore P.B., Steitz T.A.
      EMBO J. 20:4214-4221(2001) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (2.4 ANGSTROMS) OF THE 50S SUBUNIT.
      Strain: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809.
    9. "The structures of four macrolide antibiotics bound to the large ribosomal subunit."
      Hansen J.L., Ippolito J.A., Ban N., Nissen P., Moore P.B., Steitz T.A.
      Mol. Cell 10:117-128(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (3.0 ANGSTROMS) OF THE 50S SUBUNIT IN COMPLEX WITH FOUR MACROLIDE ANTIBIOTICS.
      Strain: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809.
    10. Cited for: X-RAY CRYSTALLOGRAPHY (2.8 ANGSTROMS) OF THE 50S SUBUNIT.
      Strain: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809.
    11. "Structures of five antibiotics bound at the peptidyl transferase center of the large ribosomal subunit."
      Hansen J.L., Moore P.B., Steitz T.A.
      J. Mol. Biol. 330:1061-1075(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (3.0 ANGSTROMS) OF THE 50S SUBUNIT IN COMPLEX WITH FIVE ANTIBIOTICS AT THE PEPTIDYL TRANSFERASE CENTER.
      Strain: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809.
    12. "Structures of deacylated tRNA mimics bound to the E site of the large ribosomal subunit."
      Schmeing T.M., Moore P.B., Steitz T.A.
      RNA 9:1345-1352(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (2.9 ANGSTROMS) OF THE 50S SUBUNIT WITH TWO DIFFERENT E SITE SUBSTRATES.
    13. "Revisiting the Haloarcula marismortui 50S ribosomal subunit model."
      Gabdulkhakov A., Nikonov S., Garber M.
      Acta Crystallogr. D 69:997-1004(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (2.4 ANGSTROMS) OF THE 50S SUBUNIT.

    Entry informationi

    Entry nameiRL29_HALMA
    AccessioniPrimary (citable) accession number: P10971
    Secondary accession number(s): P22526, Q5V1T1
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 1, 1989
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 111 of the entry and version 3 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3