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P10930 (VG12_BPT4) Reviewed, UniProtKB/Swiss-Prot

Last modified June 11, 2014. Version 97. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Short tail fiber protein
Alternative name(s):
Protein Gp12
Short name=p12
Gene names
Name:12
OrganismEnterobacteria phage T4 (Bacteriophage T4) [Reference proteome]
Taxonomic identifier10665 [NCBI]
Taxonomic lineageVirusesdsDNA viruses, no RNA stageCaudoviralesMyoviridaeTevenvirinaeT4likevirus
Virus hostEscherichia coli [TaxID: 562]

Protein attributes

Sequence length527 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Structural component of the short tail fiber. Secondary adhesin that binds irreversibly to the lipopolysaccharides component on the cell surface of Escherichia coli B strains during virus attachment. Ref.5

Subunit structure

Homotrimer.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 527527Short tail fiber protein
PRO_0000165002

Experimental info

Sequence conflict331Q → H in CAA29951. Ref.1
Sequence conflict331Q → H in AAD42417. Ref.2

Secondary structure

......................................... 527
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P10930 [UniParc].

Last modified May 5, 2009. Version 3.
Checksum: F86C7E65205486CC

FASTA52756,205
        10         20         30         40         50         60 
MSNNTYQHVS NESRYVKFDP TDTNFPPEIT DVQAAIAAIS PAGVNGVPDA SSTTKGILFI 

        70         80         90        100        110        120 
PTEQEVIDGT NNTKAVTPAT LATRLSYPNA TETVYGLTRY STNDEAIAGV NNESSITPAK 

       130        140        150        160        170        180 
FTVALNNAFE TRVSTESSNG VIKISSLPQA LAGADDTTAM TPLKTQQLAI KLIAQIAPSE 

       190        200        210        220        230        240 
TTATESDQGV VQLATVAQVR QGTLREGYAI SPYTFMNSSS TEEYKGVIKL GTQSEVNSNN 

       250        260        270        280        290        300 
ASVAVTGATL NGRGSTTSMR GVVKLTTTAG SQSGGDASSA LAWNADVIQQ RGGQIIYGTL 

       310        320        330        340        350        360 
RIEDTFTIAN GGANITGTVR MTGGYIQGNR IVTQNEIDRT IPVGAIMMWA ADSLPSDAWR 

       370        380        390        400        410        420 
FCHGGTVSAS DCPLYASRIG TRYGGNPSNP GLPDMRGLFV RGSGRGSHLT NPNVNGNDQF 

       430        440        450        460        470        480 
GKPRLGVGCT GGYVGEVQIQ QMSYHKHAGG FGEHDDLGAF GNTRRSNFVG TRKGLDWDNR 

       490        500        510        520 
SYFTNDGYEI DPESQRNSKY TLNRPELIGN ETRPWNISLN YIIKVKE 

« Hide

References

« Hide 'large scale' references
[1]"Nucleotide and deduced amino acid sequence of bacteriophage T4 gene 12."
Selivanov N.A., Prilipov A.G., Mesyanzhinov V.V.
Nucleic Acids Res. 16:2334-2334(1988) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: D.
[2]"Bacteriophage T4 genome."
Miller E.S., Kutter E., Mosig G., Arisaka F., Kunisawa T., Ruger W.
Microbiol. Mol. Biol. Rev. 67:86-156(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[3]"Using transposon Tn5 insertions to sequence bacteriophage T4 gene 11."
Barrett B.K., Berget P.B.
DNA 8:287-295(1989) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-57.
Strain: D.
[4]"Nucleotide sequences of bacteriophage T4 genes 9, 10 and 11."
Prilipov A.G., Selivanov N.A., Efimov V.P., Marusich E.I., Mesyanzhinov V.V.
Nucleic Acids Res. 17:3303-3303(1989) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-4.
Strain: D.
[5]"Homotrimeric, beta-stranded viral adhesins and tail proteins."
Weigele P.R., Scanlon E., King J.
J. Bacteriol. 185:4022-4030(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: FUNCTION.
[6]"Crystal structure of a heat and protease-stable part of the bacteriophage T4 short tail fibre."
van Raaij M.J., Schoehn G., Burda M.R., Miller S.
J. Mol. Biol. 314:1137-1146(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (1.9 ANGSTROMS) OF 250-527.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
X06792 Genomic DNA. Translation: CAA29951.1.
AF158101 Genomic DNA. Translation: AAD42417.1.
M26253 Genomic DNA. Translation: AAA32495.1.
X14192 Genomic DNA. Translation: CAA32398.1.
PIRC32479.
GIBPT4. S01889.
RefSeqNP_049770.1. NC_000866.4.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1H6WX-ray1.90A85-396[»]
B518-527[»]
1OCYX-ray1.50A332-527[»]
1PDIelectron microscopy12.00A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R250-527[»]
ModBaseSearch...
MobiDBSearch...

Protein family/group databases

TCDB1.K.1.1.1. the gp27/5 t4-baseplate (t4-bp) family.

Proteomic databases

PRIDEP10930.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID1258789.

Family and domain databases

Gene3D2.160.30.10. 1 hit.
3.90.1340.10. 1 hit.
4.10.1070.10. 1 hit.
InterProIPR015173. Phage_T4_Gp12.
IPR023304. Phage_T4_Gp12_dom2.
IPR011083. Phage_tail_collar_dom.
IPR027448. Short_tail_fibre_C.
[Graphical view]
PfamPF07484. Collar. 1 hit.
PF09089. gp12-short_mid. 1 hit.
PF14928. S_tail_recep_bd. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceP10930.

Entry information

Entry nameVG12_BPT4
AccessionPrimary (citable) accession number: P10930
Entry history
Integrated into UniProtKB/Swiss-Prot: July 1, 1989
Last sequence update: May 5, 2009
Last modified: June 11, 2014
This is version 97 of the entry and version 3 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

PDB cross-references

Index of Protein Data Bank (PDB) cross-references