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P10930

- FIB12_BPT4

UniProt

P10930 - FIB12_BPT4

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Protein

Short tail fiber protein gp12

Gene

12

Organism
Enterobacteria phage T4 (Bacteriophage T4)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli

Functioni

Structural component of the short tail fiber. Secondary adhesin that binds irreversibly to the lipopolysaccharides component on the cell surface of Escherichia coli B strains during virus attachment.1 Publication

GO - Molecular functioni

  1. metal ion binding Source: InterPro

GO - Biological processi

  1. viral entry into host cell Source: UniProtKB-KW
  2. virion attachment to host cell Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Host-virus interaction, Viral attachment to host cell, Virus entry into host cell

Protein family/group databases

TCDBi1.K.1.1.1. the gp27/5 t4-baseplate (t4-bp) family.

Names & Taxonomyi

Protein namesi
Recommended name:
Short tail fiber protein gp12
Alternative name(s):
Gene product 12
Short name:
gp12
Gene namesi
Name:12
OrganismiEnterobacteria phage T4 (Bacteriophage T4)
Taxonomic identifieri10665 [NCBI]
Taxonomic lineageiVirusesdsDNA viruses, no RNA stageCaudoviralesMyoviridaeTevenvirinaeT4likevirus
Virus hostiEscherichia coli [TaxID: 562]
ProteomesiUP000009087: Genome

Subcellular locationi

GO - Cellular componenti

  1. virion Source: CACAO
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 527527Short tail fiber protein gp12PRO_0000165002Add
BLAST

Proteomic databases

PRIDEiP10930.

Interactioni

Subunit structurei

Homotrimer.

Structurei

Secondary structure

1
527
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi247 – 2504Combined sources
Beta strandi257 – 2593Combined sources
Beta strandi264 – 2685Combined sources
Beta strandi276 – 2816Combined sources
Helixi335 – 3406Combined sources
Beta strandi346 – 3538Combined sources
Beta strandi359 – 3646Combined sources
Turni369 – 3713Combined sources
Helixi373 – 3786Combined sources
Turni379 – 3835Combined sources
Beta strandi387 – 3915Combined sources
Helixi407 – 4104Combined sources
Helixi412 – 4143Combined sources
Beta strandi415 – 4173Combined sources
Turni425 – 4284Combined sources
Beta strandi454 – 4563Combined sources
Beta strandi465 – 4673Combined sources
Helixi493 – 4953Combined sources
Helixi498 – 5003Combined sources
Beta strandi508 – 5103Combined sources
Beta strandi520 – 5245Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1H6WX-ray1.90A85-396[»]
B518-527[»]
1OCYX-ray1.50A332-527[»]
1PDIelectron microscopy12.00A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R250-527[»]
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP10930.

Family & Domainsi

Family and domain databases

Gene3Di2.160.30.10. 1 hit.
3.90.1340.10. 1 hit.
4.10.1070.10. 1 hit.
InterProiIPR015173. Phage_T4_Gp12.
IPR023304. Phage_T4_Gp12_dom2.
IPR011083. Phage_tail_collar_dom.
IPR027448. Short_tail_fibre_C.
[Graphical view]
PfamiPF07484. Collar. 1 hit.
PF09089. gp12-short_mid. 1 hit.
PF14928. S_tail_recep_bd. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P10930-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSNNTYQHVS NESRYVKFDP TDTNFPPEIT DVQAAIAAIS PAGVNGVPDA
60 70 80 90 100
SSTTKGILFI PTEQEVIDGT NNTKAVTPAT LATRLSYPNA TETVYGLTRY
110 120 130 140 150
STNDEAIAGV NNESSITPAK FTVALNNAFE TRVSTESSNG VIKISSLPQA
160 170 180 190 200
LAGADDTTAM TPLKTQQLAI KLIAQIAPSE TTATESDQGV VQLATVAQVR
210 220 230 240 250
QGTLREGYAI SPYTFMNSSS TEEYKGVIKL GTQSEVNSNN ASVAVTGATL
260 270 280 290 300
NGRGSTTSMR GVVKLTTTAG SQSGGDASSA LAWNADVIQQ RGGQIIYGTL
310 320 330 340 350
RIEDTFTIAN GGANITGTVR MTGGYIQGNR IVTQNEIDRT IPVGAIMMWA
360 370 380 390 400
ADSLPSDAWR FCHGGTVSAS DCPLYASRIG TRYGGNPSNP GLPDMRGLFV
410 420 430 440 450
RGSGRGSHLT NPNVNGNDQF GKPRLGVGCT GGYVGEVQIQ QMSYHKHAGG
460 470 480 490 500
FGEHDDLGAF GNTRRSNFVG TRKGLDWDNR SYFTNDGYEI DPESQRNSKY
510 520
TLNRPELIGN ETRPWNISLN YIIKVKE
Length:527
Mass (Da):56,205
Last modified:May 5, 2009 - v3
Checksum:iF86C7E65205486CC
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti33 – 331Q → H in CAA29951. (PubMed:3357780)Curated
Sequence conflicti33 – 331Q → H in AAD42417. (PubMed:12626685)Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X06792 Genomic DNA. Translation: CAA29951.1.
AF158101 Genomic DNA. Translation: AAD42417.1.
M26253 Genomic DNA. Translation: AAA32495.1.
X14192 Genomic DNA. Translation: CAA32398.1.
PIRiC32479.
S01889. GIBPT4.
RefSeqiNP_049770.1. NC_000866.4.

Genome annotation databases

GeneIDi1258789.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X06792 Genomic DNA. Translation: CAA29951.1 .
AF158101 Genomic DNA. Translation: AAD42417.1 .
M26253 Genomic DNA. Translation: AAA32495.1 .
X14192 Genomic DNA. Translation: CAA32398.1 .
PIRi C32479.
S01889. GIBPT4.
RefSeqi NP_049770.1. NC_000866.4.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1H6W X-ray 1.90 A 85-396 [» ]
B 518-527 [» ]
1OCY X-ray 1.50 A 332-527 [» ]
1PDI electron microscopy 12.00 A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R 250-527 [» ]
ModBasei Search...
MobiDBi Search...

Protein family/group databases

TCDBi 1.K.1.1.1. the gp27/5 t4-baseplate (t4-bp) family.

Proteomic databases

PRIDEi P10930.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 1258789.

Miscellaneous databases

EvolutionaryTracei P10930.

Family and domain databases

Gene3Di 2.160.30.10. 1 hit.
3.90.1340.10. 1 hit.
4.10.1070.10. 1 hit.
InterProi IPR015173. Phage_T4_Gp12.
IPR023304. Phage_T4_Gp12_dom2.
IPR011083. Phage_tail_collar_dom.
IPR027448. Short_tail_fibre_C.
[Graphical view ]
Pfami PF07484. Collar. 1 hit.
PF09089. gp12-short_mid. 1 hit.
PF14928. S_tail_recep_bd. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Nucleotide and deduced amino acid sequence of bacteriophage T4 gene 12."
    Selivanov N.A., Prilipov A.G., Mesyanzhinov V.V.
    Nucleic Acids Res. 16:2334-2334(1988) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: D.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. "Using transposon Tn5 insertions to sequence bacteriophage T4 gene 11."
    Barrett B.K., Berget P.B.
    DNA 8:287-295(1989) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-57.
    Strain: D.
  4. Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-4.
    Strain: D.
  5. "Homotrimeric, beta-stranded viral adhesins and tail proteins."
    Weigele P.R., Scanlon E., King J.
    J. Bacteriol. 185:4022-4030(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION.
  6. "Crystal structure of a heat and protease-stable part of the bacteriophage T4 short tail fibre."
    van Raaij M.J., Schoehn G., Burda M.R., Miller S.
    J. Mol. Biol. 314:1137-1146(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.9 ANGSTROMS) OF 250-527.

Entry informationi

Entry nameiFIB12_BPT4
AccessioniPrimary (citable) accession number: P10930
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 1989
Last sequence update: May 5, 2009
Last modified: November 26, 2014
This is version 101 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

External Data

Dasty 3