Reviewed,
UniProtKB/Swiss-Prot P10827 (THA_HUMAN)
Last modified
March 2, 2010.
Version 136.
History...
Clusters with 100%,
90%,
50% identity |
Documents (4) |
Third-party data |
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Names and origin
| Protein names | Recommended name: Thyroid hormone receptor alpha Alternative name(s): Nuclear receptor subfamily 1 group A member 1 c-erbA-alpha c-erbA-1 V-erbA-related protein 7 Short name=EAR-7 | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) [Complete proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 490 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level. |
General annotation (Comments)
| Function | Nuclear hormone receptor. High affinity receptor for triiodothyronine. |
| Subunit structure | Interacts with NCOA3 and NCOA6 coactivators, leading to a strong increase of transcription of target genes. Probably interacts with SFPQ. Interacts with C1D By similarity. Interacts with AKAP13. Ref.11 Ref.12 Ref.13 |
| Subcellular location | |
| Domain | Composed of three domains: a modulating N-terminal domain, a DNA-binding domain and a C-terminal steroid-binding domain. |
| Sequence similarities | Belongs to the nuclear hormone receptor family. NR1 subfamily. Contains 1 nuclear receptor DNA-binding domain. |
Ontologies
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| MED1 | Q15648 | 1 | EBI-286285,EBI-394459 | |
| Ncoa6 | Q9JLI4 | 1 | EBI-286285,EBI-286271 | From a different organism. |
Alternative products
| This entry describes 4 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform Alpha-2 (identifier: P10827-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform Alpha-1 (identifier: P10827-2) The sequence of this isoform differs from the canonical sequence as follows: 371-490: EREVQSSILY...EDLAGNAASP → VTDLRMIGAC...FLEVFEDQEV | ||||||
| Isoform Alpha-3 (identifier: P10827-3) The sequence of this isoform differs from the canonical sequence as follows: 371-409: Missing. | ||||||
| Isoform Alpha-4 (identifier: P10827-4) Also known as: Alpha3; The sequence of this isoform differs from the canonical sequence as follows: 371-412: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | |||||||||||||||||||||||||||||||||||||||||
Molecule processing | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 490 | 490 | Thyroid hormone receptor alpha | PRO_0000053424 | ||||||||||||||||||||||||||||||||||||||||||
Regions | ||||||||||||||||||||||||||||||||||||||||||||||
| DNA binding | 53 – 127 | 75 | Nuclear receptor | |||||||||||||||||||||||||||||||||||||||||||
| Zinc finger | 53 – 73 | 21 | NR C4-type | |||||||||||||||||||||||||||||||||||||||||||
| Zinc finger | 91 – 115 | 25 | NR C4-type | |||||||||||||||||||||||||||||||||||||||||||
| Region | 1 – 52 | 52 | Modulating | |||||||||||||||||||||||||||||||||||||||||||
| Region | 190 – 370 | 181 | Ligand-binding | |||||||||||||||||||||||||||||||||||||||||||
Amino acid modifications | ||||||||||||||||||||||||||||||||||||||||||||||
| Cross-link | 190 | Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) Ref.14 | ||||||||||||||||||||||||||||||||||||||||||||
Natural variations | ||||||||||||||||||||||||||||||||||||||||||||||
| Alternative sequence | 371 – 490 | 120 | EREVQ…NAASP → VTDLRMIGACHASRFLHMKV ECPTELFPPLFLEVFEDQEV in isoform Alpha-1. | VSP_003621 | ||||||||||||||||||||||||||||||||||||||||||
| Alternative sequence | 371 – 412 | 42 | Missing in isoform Alpha-4. | VSP_003623 | ||||||||||||||||||||||||||||||||||||||||||
| Alternative sequence | 371 – 409 | 39 | Missing in isoform Alpha-3. | VSP_003622 | ||||||||||||||||||||||||||||||||||||||||||
Experimental info | ||||||||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 37 | 1 | T → S Ref.4 | |||||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 37 | 1 | T → S Ref.7 | |||||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 119 | 1 | G → A Ref.4 | |||||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 119 | 1 | G → A Ref.7 | |||||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 285 | 1 | E → A in CAB57886. Ref.1 | |||||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 285 | 1 | E → A in CAA38899. Ref.1 | |||||||||||||||||||||||||||||||||||||||||||
Secondary structure | ||||||||||||||||||||||||||||||||||||||||||||||
Helix Strand Turn | ||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 148 – 151 | 4 | ||||||||||||||||||||||||||||||||||||||||||||
| Turn | 152 – 154 | 3 | ||||||||||||||||||||||||||||||||||||||||||||
| Helix | 162 – 176 | 15 | ||||||||||||||||||||||||||||||||||||||||||||
| Turn | 180 – 184 | 5 | ||||||||||||||||||||||||||||||||||||||||||||
| Helix | 185 – 188 | 4 | ||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 196 – 198 | 3 | ||||||||||||||||||||||||||||||||||||||||||||
| Helix | 212 – 219 | 8 | ||||||||||||||||||||||||||||||||||||||||||||
| Helix | 222 – 234 | 13 | ||||||||||||||||||||||||||||||||||||||||||||
| Helix | 237 – 240 | 4 | ||||||||||||||||||||||||||||||||||||||||||||
| Helix | 244 – 264 | 21 | ||||||||||||||||||||||||||||||||||||||||||||
| Turn | 269 – 272 | 4 | ||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 273 – 276 | 4 | ||||||||||||||||||||||||||||||||||||||||||||
| Turn | 277 – 279 | 3 | ||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 280 – 283 | 4 | ||||||||||||||||||||||||||||||||||||||||||||
| Helix | 284 – 289 | 6 | ||||||||||||||||||||||||||||||||||||||||||||
| Turn | 290 – 293 | 4 | ||||||||||||||||||||||||||||||||||||||||||||
| Helix | 294 – 306 | 13 | ||||||||||||||||||||||||||||||||||||||||||||
| Helix | 307 – 309 | 3 | ||||||||||||||||||||||||||||||||||||||||||||
| Helix | 313 – 324 | 12 | ||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 329 – 331 | 3 | ||||||||||||||||||||||||||||||||||||||||||||
| Helix | 335 – 356 | 22 | ||||||||||||||||||||||||||||||||||||||||||||
| Helix | 363 – 388 | 26 | ||||||||||||||||||||||||||||||||||||||||||||
| Helix | 394 – 396 | 3 | ||||||||||||||||||||||||||||||||||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Genomic organization of the human thyroid hormone receptor alpha (c-erbA-1) gene." Laudet V., Begue A., Henry C., Joubel A., Martin P., Stehelin D., Saule S. Nucleic Acids Res. 19:1105-1112(1991) [PubMed: 1850510] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA] (ISOFORMS ALPHA-1 AND ALPHA-2). |
| [2] | "Two erbA homologs encoding proteins with different T3 binding capacities are transcribed from opposite DNA strands of the same genetic locus." Miyajima N., Horiuchi R., Shibuya Y., Fukushige S., Matsubara K., Toyoshima K., Yamamoto T. Cell 57:31-39(1989) [PubMed: 2539258] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS ALPHA-1 AND ALPHA-2). |
| [3] | "Characterization of a thyroid hormone receptor expressed in human kidney and other tissues." Nakai A., Seino S., Sakurai A., Szilak I., Bell G.I., Degroot L.J. Proc. Natl. Acad. Sci. U.S.A. 85:2781-2785(1988) [PubMed: 3357890] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM ALPHA-2). Tissue: Kidney. |
| [4] | "Nucleotide sequence of cDNA encoding a novel human thyroid hormone receptor." Pfahl M., Benbrook D. Nucleic Acids Res. 15:9613-9613(1987) [PubMed: 3684612] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM ALPHA-2). Tissue: Testis. |
| [5] | "Characterization of a third human thyroid hormone receptor coexpressed with other thyroid hormone receptors in several tissues." Nakai A., Sakurai A., Bell G.I., Degroot L.J. Mol. Endocrinol. 2:1087-1092(1988) [PubMed: 2464749] [Abstract] Cited for: NUCLEOTIDE SEQUENCE (ISOFORM ALPHA-1). |
| [6] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed: 14702039] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM ALPHA-2). Tissue: Brain. |
| [7] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [8] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS ALPHA-2 AND ALPHA-3). Tissue: Brain, Hippocampus and Muscle. |
| [9] | "A novel thyroid hormone receptor encoded by a cDNA clone from a human testis library." Benbrook D., Pfahl M. Science 238:788-791(1987) [PubMed: 3672126] [Abstract] Cited for: NUCLEOTIDE SEQUENCE OF 1-370. |
| [10] | Liu C., Li L., Liu B., Zang X. Submitted (JUN-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE OF 280-451 (ISOFORM ALPHA-4). Tissue: Brain cortex. |
| [11] | "Nuclear receptor coactivator ACTR is a novel histone acetyltransferase and forms a multimeric activation complex with P/CAF and CBP/p300." Chen H., Lin R.J., Schiltz R.L., Chakravarti D., Nash A., Nagy L., Privalsky M.L., Nakatani Y., Evans R.M. Cell 90:569-580(1997) [PubMed: 9267036] [Abstract] Cited for: INTERACTION WITH NCOA3. |
| [12] | "Characterization of Brx, a novel Dbl family member that modulates estrogen receptor action." Rubino D., Driggers P., Arbit D., Kemp L., Miller B., Coso O., Pagliai K., Gray K., Gutkind S., Segars J. Oncogene 16:2513-2526(1998) [PubMed: 9627117] [Abstract] Cited for: INTERACTION WITH AKAP13. |
| [13] | "A nuclear factor ASC-2, as a cancer-amplified transcriptional coactivator essential for ligand-dependent transactivation by nuclear receptors in vivo." Lee S.-K., Anzick S.L., Choi J.-E., Bubendorf L., Guan X.-Y., Jung Y.-K., Kallioniemi O.-P., Kononen J., Trent J.M., Azorsa D., Jhun B.-H., Cheong J.H., Lee Y.C., Meltzer P.S., Lee J.W. J. Biol. Chem. 274:34283-34293(1999) [PubMed: 10567404] [Abstract] Cited for: INTERACTION WITH NCOA6. |
| [14] | "Proteomic analysis of ubiquitinated proteins in normal hepatocyte cell line Chang liver cells." Tan F., Lu L., Cai Y., Wang J., Xie Y., Wang L., Gong Y., Xu B.-E., Wu J., Luo Y., Qiang B., Yuan J., Sun X., Peng X. Proteomics 8:2885-2896(2008) [PubMed: 18655026] [Abstract] Cited for: UBIQUITINATION [LARGE SCALE ANALYSIS] AT LYS-190, MASS SPECTROMETRY. Tissue: Liver. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | X55074 X55066 Genomic DNA. Translation: CAB57886.1. X55005 mRNA. Translation: CAA38749.1. X55074 X55068 Genomic DNA. Translation: CAA38899.1. M24899 mRNA. Translation: AAA35783.1. M24900 mRNA. Translation: AAA52333.1. J03239 mRNA. Translation: AAA61176.1. Y00479 mRNA. Translation: CAA68539.1. M24748 Genomic DNA. Translation: AAA66021.1. AK290530 mRNA. Translation: BAF83219.1. CH471152 Genomic DNA. Translation: EAW60632.1. BC000261 mRNA. Translation: AAH00261.1. BC002728 mRNA. Translation: AAH02728.1. BC035137 mRNA. Translation: AAH35137.1. AF522368 mRNA. Translation: AAM77692.1. | ||||||||||||||||||
| IPI | IPI00022991. IPI00219099. IPI00219100. IPI00219101. | ||||||||||||||||||
| PIR | A30893. A40917. S06163. | ||||||||||||||||||
| RefSeq | NP_003241.2. NP_955366.1. | ||||||||||||||||||
| UniGene | Hs.724 | ||||||||||||||||||
3D structure databases | |||||||||||||||||||
| PDBe RCSB PDB PDBj |
| ||||||||||||||||||
| SMR | P10827. Positions 50-138. | ||||||||||||||||||
| ModBase | Search... | ||||||||||||||||||
Protein-protein interaction databases | |||||||||||||||||||
| IntAct | P10827. 6 interactions. | ||||||||||||||||||
| STRING | P10827. | ||||||||||||||||||
PTM databases | |||||||||||||||||||
| PhosphoSite | P10827. | ||||||||||||||||||
Proteomic databases | |||||||||||||||||||
| PRIDE | P10827. | ||||||||||||||||||
Genome annotation databases | |||||||||||||||||||
| Ensembl | ENST00000264637; ENSP00000264637; ENSG00000126351; Homo sapiens. [Genome view] | ||||||||||||||||||
| GeneID | 7067. | ||||||||||||||||||
| KEGG | hsa:7067. | ||||||||||||||||||
| UCSC | uc002htw.1. human. uc002htx.2. human. | ||||||||||||||||||
Organism-specific databases | |||||||||||||||||||
| CTD | 7067. | ||||||||||||||||||
| GeneCards | GC17P035472. | ||||||||||||||||||
| HGNC | HGNC:11796. THRA. | ||||||||||||||||||
| HPA | CAB023349. HPA009654. | ||||||||||||||||||
| MIM | 190120. gene. | ||||||||||||||||||
| PharmGKB | PA36507. | ||||||||||||||||||
| GenAtlas | Search... | ||||||||||||||||||
Phylogenomic databases | |||||||||||||||||||
| eggNOG | prNOG06097. | ||||||||||||||||||
| HOGENOM | HBG713785. | ||||||||||||||||||
| HOVERGEN | HBG005606. | ||||||||||||||||||
| InParanoid | P10827. | ||||||||||||||||||
| OMA | ILHSRAV. | ||||||||||||||||||
| PhylomeDB | P10827. | ||||||||||||||||||
Enzyme and pathway databases | |||||||||||||||||||
| Pathway_Interaction_DB | rxr_vdr_pathway. RXR and RAR hetrodimerization with other nuclear receptor. | ||||||||||||||||||
| Reactome | REACT_71. Gene Expression. | ||||||||||||||||||
Gene expression databases | |||||||||||||||||||
| ArrayExpress | P10827. | ||||||||||||||||||
| Bgee | P10827. | ||||||||||||||||||
| CleanEx | HS_THRA. | ||||||||||||||||||
| Genevestigator | P10827. | ||||||||||||||||||
| GermOnline | ENSG00000126351. Homo sapiens. | ||||||||||||||||||
Family and domain databases | |||||||||||||||||||
| InterPro | IPR008946. Nucl_hormone_rcpt_ligand-bd. IPR000536. Nucl_hrmn_rcpt_lig-bd_core. IPR001723. Str_hrmn_rcpt. IPR001728. ThyrH_rcpt. IPR001628. Znf_hrmn_rcpt. IPR013088. Znf_NHR/GATA. [Graphical view] | ||||||||||||||||||
| Gene3D | G3DSA:1.10.565.10. Nucl_hrmn_rcpt_lig_bd. 1 hit. G3DSA:3.30.50.10. Znf_NHR/GATA. 1 hit. | ||||||||||||||||||
| Pfam | PF00104. Hormone_recep. 1 hit. PF00105. zf-C4. 1 hit. [Graphical view] | ||||||||||||||||||
| PRINTS | PR00398. STRDHORMONER. PR00047. STROIDFINGER. PR00546. THYROIDHORMR. | ||||||||||||||||||
| SMART | SM00430. HOLI. 1 hit. SM00399. ZnF_C4. 1 hit. [Graphical view] | ||||||||||||||||||
| SUPFAM | SSF48508. Str_ncl_receptor. 1 hit. | ||||||||||||||||||
| PROSITE | PS00031. NUCLEAR_REC_DBD_1. 1 hit. PS51030. NUCLEAR_REC_DBD_2. 1 hit. [Graphical view] | ||||||||||||||||||
| ProtoNet | Search... | ||||||||||||||||||
Other Resources | |||||||||||||||||||
| DrugBank | DB00451. Levothyroxine. DB00279. Liothyronine. | ||||||||||||||||||
| NextBio | 27631. | ||||||||||||||||||
| SOURCE | Search... | ||||||||||||||||||
Entry information
| Entry name | THA_HUMAN | ||||||||
| Accession | Primary (citable) accession number: P10827 Secondary accession number(s): A8K3B5 Q96H73 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HPI (Human Proteome Initiative) | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 17 Human chromosome 17: entries, gene names and cross-references to MIM |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with


