Select a section on the left to see content.
<p>Provides any useful information about the protein, mostly biological knowledge.</p><p><a href='../manual/function_section' target='_top'>More...</a></p>Functioni
Condensation of UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
<p>Describes the catalytic activity of an enzyme, i.e. the chemical reaction it catalyzes. This information usually correlates with the presence of an EC (Enzyme Commission) number in the ‘Names and taxonomy’ section.</p><p><a href='../manual/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi
UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate = UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6-beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate.
<p>Describes the metabolic pathway(s) associated with a protein.</p><p><a href='../manual/pathway' target='_top'>More...</a></p>Pathwayi
<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:</p><p><a href='../manual/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni
- lipid-A-disaccharide synthase activity
<p>Inferred from Direct Assay</p>
<p>Used to indicate a direct assay for the function, process or component indicated by the GO term.</p>
<p>More information in the <a href="http://geneontology.org/page/guide-go-evidence-codes#ida">GO evidence code guide</a></p> Inferred from direct assayi
- phospholipid binding
<p>Inferred from Direct Assay</p>
<p>Used to indicate a direct assay for the function, process or component indicated by the GO term.</p>
<p>More information in the <a href="http://geneontology.org/page/guide-go-evidence-codes#ida">GO evidence code guide</a></p> Inferred from direct assayi
<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:</p><p><a href='../manual/gene_ontology' target='_top'>More...</a></p>GO - Biological processi
- lipid A biosynthetic process
<p>Inferred from Mutant Phenotype</p>
<p>Describes annotations that are concluded from looking at variations or changes in a gene product such as mutations or abnormal levels and includes techniques such as knockouts, overexpression, anti-sense experiments and use of specific protein inhibitors.</p>
<p>More information in the <a href="http://geneontology.org/page/guide-go-evidence-codes#imp">GO evidence code guide</a></p> Inferred from mutant phenotypei
<p>UniProtKB Keywords constitute a <a target="_top" href="/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='../help/keywords' target='_top'>More...</a></p>Keywords - Molecular functioni
Glycosyltransferase, Transferase
<p>UniProtKB Keywords constitute a <a target="_top" href="/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='../help/keywords' target='_top'>More...</a></p>Keywords - Biological processi
Lipid A biosynthesis, Lipid biosynthesis, Lipid metabolismEnzyme and pathway databases
Protein family/group databases
|
Carbohydrate-Active enZymes<br/><a href='/database/136'>More..</a>CAZyi | GT19. Glycosyltransferase Family 19.
|
<p>Provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.</p><p><a href='../manual/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi
| <p>Provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.</p><p><a href='../manual/protein_names' target='_top'>More...</a></p>Protein namesi | Recommended name: Lipid-A-disaccharide synthase (EC:2.4.1.182) |
| <p>Indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. 4 distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.</p><p><a href='../manual/gene_name' target='_top'>More...</a></p>Gene namesi | Ordered Locus Names:b0182, JW0177 |
| <p>Provides information on the name(s) of the organism that is the source of the protein sequence.</p><p><a href='../manual/organism-name' target='_top'>More...</a></p>Organismi | Escherichia coli (strain K12) |
| <p>Shows the unique identifier assigned by the <span class="caps">NCBI</span> to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.</p><p><a href='../manual/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri | 83333 [NCBI] |
| <p>Contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.</p><p><a href='../manual/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineagei | cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia › Escherichia coli |
| <p>Is present for entries that are part of a <a href="/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.</p><p><a href='../manual/proteomes_manual' target='_top'>More...</a></p>Proteomesi | UP000000318: Chromosome, UP000000625: Chromosome |
Organism-specific databases
|
Escherichia coli strain K12 genome database<br/><a href='/database/21'>More..</a>EcoGenei | EG10546. lpxB.
|
<p>Provides information on the location and the topology of the mature protein in the cell.</p><p><a href='../manual/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi
<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:</p><p><a href='../manual/gene_ontology' target='_top'>More...</a></p>GO - Cellular componenti
- cytoplasm
<p>Inferred from Direct Assay</p>
<p>Used to indicate a direct assay for the function, process or component indicated by the GO term.</p>
<p>More information in the <a href="http://geneontology.org/page/guide-go-evidence-codes#ida">GO evidence code guide</a></p> Inferred from direct assayi
- cytosol
<p>Inferred from Direct Assay</p>
<p>Used to indicate a direct assay for the function, process or component indicated by the GO term.</p>
<p>More information in the <a href="http://geneontology.org/page/guide-go-evidence-codes#ida">GO evidence code guide</a></p> Inferred from direct assayi
- extrinsic component of plasma membrane
<p>Inferred from Direct Assay</p>
<p>Used to indicate a direct assay for the function, process or component indicated by the GO term.</p>
<p>More information in the <a href="http://geneontology.org/page/guide-go-evidence-codes#ida">GO evidence code guide</a></p> Inferred from direct assayi
<p>Describes post-translational modifications (PTMs) and/or processing events.</p><p><a href='../manual/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi
Molecule processing
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | Actions |
|---|
| <p>Describes the extent of a polypeptide chain in the mature protein following processing.</p><p><a href='../manual/chain' target='_top'>More...</a></p>Chaini | 1 – 382 | 382 | Lipid-A-disaccharide synthase |  | PRO_0000190164 | Add
BLAST |
Proteomic databases
|
PaxDb, a database of protein abundance averages across all three domains of life.<br/><a href='/database/173'>More..</a>PaxDbi | P10441.
|
|
PRoteomics IDEntifications database<br/><a href='/database/130'>More..</a>PRIDEi | P10441.
|
<p>Provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.</p><p><a href='../manual/expression_section' target='_top'>More...</a></p>Expressioni
Gene expression databases
|
Genevestigator<br/><a href='/database/142'>More..</a>Genevestigatori | P10441.
|
<p>Provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.</p><p><a href='../manual/interaction_section' target='_top'>More...</a></p>Interactioni
<p>Provides information about binary protein-protein interactions. The data presented in this section are a quality-filtered subset of binary interactions automatically derived from the <a href="http://www.ebi.ac.uk/intact/">IntAct database</a>. It is updated on a monthly basis. Each binary interaction is displayed on a separate line.</p><p><a href='../manual/binary_interactions' target='_top'>More...</a></p>Binary interactionsi
Protein-protein interaction databases
|
Database of interacting proteins<br/><a href='/database/16'>More..</a>DIPi | DIP-10122N.
|
|
Protein interaction database and analysis system<br/><a href='/database/51'>More..</a>IntActi | P10441. 25 interactions.
|
|
Molecular INTeraction database<br/><a href='/database/158'>More..</a>MINTi | MINT-1246245.
|
|
STRING: functional protein association networks<br/><a href='/database/141'>More..</a>STRINGi | 511145.b0182.
|
<p>Provides information on the tertiary structure of a protein.</p><p><a href='../manual/structure_section' target='_top'>More...</a></p>Structurei
3D structure databases
|
Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase<br/><a href='/database/159'>More..</a>ProteinModelPortali | P10441.
|
|
Database of comparative protein structure models<br/><a href='/database/63'>More..</a>ModBasei | Search...
|
|
MobiDB: a database of protein disorder and mobility annotations<br/><a href='/database/183'>More..</a>MobiDBi | Search...
|
<p>Provides information on sequence similarities with other proteins and the domain(s) present in a protein.</p><p><a href='../manual/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi
<p>Provides information about the sequence similarity with other proteins.</p><p><a href='../manual/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi
Phylogenomic databases
|
evolutionary genealogy of genes: Non-supervised Orthologous Groups<br/><a href='/database/152'>More..</a>eggNOGi | COG0763.
|
|
The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms<br/><a href='/database/44'>More..</a>HOGENOMi | HOG000018003.
|
|
InParanoid: Eukaryotic Ortholog Groups<br/><a href='/database/146'>More..</a>InParanoidi | P10441.
|
|
KEGG Orthology (KO)<br/><a href='/database/164'>More..</a>KOi | K00748.
|
|
Identification of Orthologs from Complete Genome Data<br/><a href='/database/137'>More..</a>OMAi | QPWVGLP.
|
|
Database of Orthologous Groups<br/><a href='/database/143'>More..</a>OrthoDBi | EOG6FBWZR.
|
|
Database for complete collections of gene phylogenies<br/><a href='/database/144'>More..</a>PhylomeDBi | P10441.
|
Family and domain databases
|
HAMAP database of protein families<br/><a href='/database/41'>More..</a>HAMAPi | MF_00392. LpxB.
|
|
Integrated resource of protein families, domains and functional sites<br/><a href='/database/52'>More..</a>InterProi | IPR003835. Glyco_trans_19.
[Graphical view] |
|
Pfam protein domain database<br/><a href='/database/73'>More..</a>Pfami | PF02684. LpxB. 1 hit.
[Graphical view] |
|
TIGRFAMs; a protein family database<br/><a href='/database/104'>More..</a>TIGRFAMsi | TIGR00215. lpxB. 1 hit.
|
<p>Displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including length and molecular weight.</p><p><a href='../manual/sequences_section' target='_top'>More...</a></p>Sequencei
<p>Indicates if the canonical sequence displayed by default in the entry is complete or not.</p><p><a href='../manual/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.
Experimental Info
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | Actions |
|---|
| <p>Reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.</p><p><a href='../manual/conflict' target='_top'>More...</a></p>Sequence conflicti | 149 – 149 | 1 | F → V(PubMed:2824445) |  | | |
| <p>Reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.</p><p><a href='../manual/conflict' target='_top'>More...</a></p>Sequence conflicti | 149 – 149 | 1 | F → V"Systematic sequencing of the Escherichia coli genome: analysis of the 4.0 - 6.0 min (189,987 - 281,416bp) region."Takemoto K., Mori H., Murayama N., Kataoka K., Yano M., Itoh T., Yamamoto Y., Inokuchi H., Miki T., Hatada E., Fukuda R., Ichihara S., Mizuno T., Makino K., Nakata A., Yura T., Sampei G., Mizobuchi K.Submitted (FEB-1996) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
| | | |
Sequence databases
Genome annotation databases
|
EnsemblBacteria<br/><a href='/database/147'>More..</a>EnsemblBacteriai | AAC73293; AAC73293; b0182.
BAA77857; BAA77857; BAA77857.
|
|
Database of genes from NCBI RefSeq genomes<br/><a href='/database/118'>More..</a>GeneIDi | 12931876.
944838.
|
|
KEGG: Kyoto Encyclopedia of Genes and Genomes<br/><a href='/database/53'>More..</a>KEGGi | ecj:Y75_p0178.
eco:b0182.
|
|
Pathosystems Resource Integration Center (PATRIC)<br/><a href='/database/165'>More..</a>PATRICi | 32115475. VBIEscCol129921_0189.
|
<p>Is used to point to information related to entries and found in data collections other than UniProtKB.</p><p><a href='../manual/cross_references_section' target='_top'>More...</a></p>
Cross-referencesi
Sequence databases
3D structure databases
|
Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase<br/><a href='/database/159'>More..</a>
ProteinModelPortali
|
P10441.
|
|
Database of comparative protein structure models<br/><a href='/database/63'>More..</a>
ModBasei
|
Search...
|
|
MobiDB: a database of protein disorder and mobility annotations<br/><a href='/database/183'>More..</a>
MobiDBi
|
Search...
|
Protein-protein interaction databases
|
Database of interacting proteins<br/><a href='/database/16'>More..</a>
DIPi
|
DIP-10122N.
|
|
Protein interaction database and analysis system<br/><a href='/database/51'>More..</a>
IntActi
|
P10441.
25 interactions.
|
|
Molecular INTeraction database<br/><a href='/database/158'>More..</a>
MINTi
|
MINT-1246245.
|
|
STRING: functional protein association networks<br/><a href='/database/141'>More..</a>
STRINGi
|
511145.b0182.
|
Protein family/group databases
|
Carbohydrate-Active enZymes<br/><a href='/database/136'>More..</a>
CAZyi
|
GT19.
Glycosyltransferase Family 19.
|
Proteomic databases
|
PaxDb, a database of protein abundance averages across all three domains of life.<br/><a href='/database/173'>More..</a>
PaxDbi
|
P10441.
|
|
PRoteomics IDEntifications database<br/><a href='/database/130'>More..</a>
PRIDEi
|
P10441.
|
Protocols and materials databases
|
The DNASU plasmid repository<br/><a href='/database/167'>More..</a>
DNASUi
|
944838.
|
|
Structural Biology Knowledgebase
|
Search...
|
Genome annotation databases
|
EnsemblBacteria<br/><a href='/database/147'>More..</a>
EnsemblBacteriai
|
AAC73293
; AAC73293
; b0182
.
BAA77857
; BAA77857
; BAA77857
.
|
|
Database of genes from NCBI RefSeq genomes<br/><a href='/database/118'>More..</a>
GeneIDi
|
12931876.
944838.
|
|
KEGG: Kyoto Encyclopedia of Genes and Genomes<br/><a href='/database/53'>More..</a>
KEGGi
|
ecj:Y75_p0178.
eco:b0182.
|
|
Pathosystems Resource Integration Center (PATRIC)<br/><a href='/database/165'>More..</a>
PATRICi
|
32115475.
VBIEscCol129921_0189.
|
Organism-specific databases
|
EchoBASE - an integrated post-genomic database for E. coli<br/><a href='/database/20'>More..</a>
EchoBASEi
|
EB0541.
|
|
Escherichia coli strain K12 genome database<br/><a href='/database/21'>More..</a>
EcoGenei
|
EG10546.
lpxB.
|
Phylogenomic databases
|
evolutionary genealogy of genes: Non-supervised Orthologous Groups<br/><a href='/database/152'>More..</a>
eggNOGi
|
COG0763.
|
|
The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms<br/><a href='/database/44'>More..</a>
HOGENOMi
|
HOG000018003.
|
|
InParanoid: Eukaryotic Ortholog Groups<br/><a href='/database/146'>More..</a>
InParanoidi
|
P10441.
|
|
KEGG Orthology (KO)<br/><a href='/database/164'>More..</a>
KOi
|
K00748.
|
|
Identification of Orthologs from Complete Genome Data<br/><a href='/database/137'>More..</a>
OMAi
|
QPWVGLP.
|
|
Database of Orthologous Groups<br/><a href='/database/143'>More..</a>
OrthoDBi
|
EOG6FBWZR.
|
|
Database for complete collections of gene phylogenies<br/><a href='/database/144'>More..</a>
PhylomeDBi
|
P10441.
|
Enzyme and pathway databases
Miscellaneous databases
|
Protein Ontology<br/><a href='/database/181'>More..</a>
PROi
|
P10441.
|
Gene expression databases
|
Genevestigator<br/><a href='/database/142'>More..</a>
Genevestigatori
|
P10441.
|
Family and domain databases
|
HAMAP database of protein families<br/><a href='/database/41'>More..</a>
HAMAPi
|
MF_00392.
LpxB.
|
|
Integrated resource of protein families, domains and functional sites<br/><a href='/database/52'>More..</a>
InterProi
|
IPR003835.
Glyco_trans_19.
[Graphical view
] |
|
Pfam protein domain database<br/><a href='/database/73'>More..</a>
Pfami
|
PF02684.
LpxB. 1 hit.
[Graphical view
] |
|
TIGRFAMs; a protein family database<br/><a href='/database/104'>More..</a>
TIGRFAMsi
|
TIGR00215.
lpxB. 1 hit.
|
|
ProtoNet; Automatic hierarchical classification of proteins<br/><a href='/database/85'>More..</a>
ProtoNeti
|
Search...
|
<p>Contains the literature citations that are the sources of data used to annotate the entry. Each reference is numbered and contains several subsections allowing a precise description of a given citation.</p><p><a href='../manual/publications_section' target='_top'>More...</a></p>Publicationsi
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
"Systematic sequencing of the Escherichia coli genome: analysis of the 4.0 - 6.0 min (189,987 - 281,416bp) region."Takemoto K.,
Mori H.,
Murayama N.,
Kataoka K.,
Yano M.,
Itoh T.,
Yamamoto Y.,
Inokuchi H.,
Miki T.,
Hatada E.,
Fukuda R.,
Ichihara S.,
Mizuno T.,
Makino K.,
Nakata A.,
Yura T.,
Sampei G.,
Mizobuchi K.Submitted (FEB-1996) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
"Sequence of minutes 4-25 of Escherichia coli."Chung E.,
Allen E.,
Araujo R.,
Aparicio A.M.,
Davis K.,
Duncan M.,
Federspiel N.,
Hyman R.,
Kalman S.,
Komp C.,
Kurdi O.,
Lew H.,
Lin D.,
Namath A.,
Oefner P.,
Roberts D.,
Schramm S.,
Davis R.W.Submitted (JAN-1997) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / MG1655 / ATCC 47076.
"The complete genome sequence of Escherichia coli K-12."Blattner F.R.,
Plunkett G. III,
Bloch C.A.,
Perna N.T.,
Burland V.,
Riley M.,
Collado-Vides J.,
Glasner J.D.,
Rode C.K.,
Mayhew G.F.,
Gregor J.,
Davis N.W.,
Kirkpatrick H.A.,
Goeden M.A.,
Rose D.J.,
Mau B.,
Shao Y.Science 277:1453-1462(1997) [
PubMed] [
Europe PMC] [
Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / MG1655 / ATCC 47076.
"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."Hayashi K.,
Morooka N.,
Yamamoto Y.,
Fujita K.,
Isono K.,
Choi S.,
Ohtsubo E.,
Baba T.,
Wanner B.L.,
Mori H.,
Horiuchi T.Mol. Syst. Biol. 2:E1-E5(2006) [
PubMed] [
Europe PMC] [
Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], SEQUENCE REVISION TO 149.
Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
Cited for:
NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-19. Cited for:
NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 329-382.
<p>Provides general information on the entry.</p><p><a href='../manual/entry_information_section' target='_top'>More...</a></p>Entry informationi
| <p>Provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.</p><p><a href='../manual/entry_name' target='_top'>More...</a></p>Entry namei | LPXB_ECOLI |
| <p>Provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.</p><p><a href='../manual/accession_numbers' target='_top'>More...</a></p>Accessioni | P10441Primary (citable) accession number: P10441
Secondary accession number(s): P78298 |
| <p>Shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the sequence are also displayed.</p><p><a href='../manual/entry_history' target='_top'>More...</a></p>Entry historyi | | Integrated into UniProtKB/Swiss-Prot: | July 1, 1989 | | Last sequence update: | July 19, 2003 | | Last modified: | January 7, 2015 | | This is version 122 of the entry and version 2 of the sequence. [Complete history] |
|
| <p>Indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).</p><p><a href='../manual/entry_status' target='_top'>More...</a></p>Entry statusi | Reviewed (UniProtKB/Swiss-Prot) |
| Annotation program | Prokaryotic Protein Annotation Program |
<p>Contains any relevant information that doesn’t fit in any other defined sections</p><p><a href='../manual/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi
<p>UniProtKB Keywords constitute a <a target="_top" href="/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='../help/keywords' target='_top'>More...</a></p>Keywords - Technical termi
Complete proteome, Reference proteomeDocuments
- Escherichia coli
Escherichia coli (strain K12): entries and cross-references to EcoGene
- PATHWAY comments
Index of metabolic and biosynthesis pathways
- SIMILARITY comments
Index of protein domains and families
External Data
Dasty 3<p>Provides links to the UniProt Reference Clusters (<a href="/help/uniref">UniRef</a>). UniRef consists of clusters for UniProtKB sequences (including isoforms) and selected UniParc sequences, in order to obtain complete coverage of the sequence space at resolutions of 100%, 90% and 50% identity.</p><p><a href='../manual/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi
Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:| 100% | UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry. |
| 90% | UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence). |
| 50% | UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster. |
