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Protein

Pollen allergen Amb t 5

Gene
N/A
Organism
Ambrosia trifida (Giant ragweed)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Pollen allergen Amb t 5
Alternative name(s):
Allergen Amb t V
Allergen Ra5G
Allergen: Amb t 5
OrganismiAmbrosia trifida (Giant ragweed)
Taxonomic identifieri4214 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaeasteridscampanulidsAsteralesAsteraceaeAsteroideaeHeliantheae allianceHeliantheaeAmbrosia

Pathology & Biotechi

Allergenic propertiesi

Causes an allergic reaction in human.

Keywords - Diseasei

Allergen

Protein family/group databases

Allergomei3074. Amb t 5.0101.
32. Amb t 5.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2020Sequence analysisAdd
BLAST
Propeptidei21 – 3313Sequence analysisPRO_0000021751Add
BLAST
Chaini34 – 7340Pollen allergen Amb t 5PRO_0000021752Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi38 ↔ 681 Publication
Disulfide bondi44 ↔ 591 Publication
Disulfide bondi51 ↔ 611 Publication
Disulfide bondi52 ↔ 721 Publication

Keywords - PTMi

Disulfide bond

Interactioni

Subunit structurei

Monomer.

Structurei

Secondary structure

1
73
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi39 – 424Combined sources
Beta strandi49 – 524Combined sources
Beta strandi54 – 585Combined sources
Beta strandi60 – 645Combined sources
Helixi65 – 728Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1BBGNMR-A34-73[»]
2BBGNMR-A34-73[»]
3BBGNMR-A34-73[»]
ProteinModelPortaliP10414.
SMRiP10414. Positions 34-73.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP10414.

Family & Domainsi

Keywords - Domaini

Signal

Family and domain databases

Gene3Di3.30.160.80. 1 hit.
InterProiIPR005611. Amb_V_allergen.
[Graphical view]
PfamiPF03913. Amb_V_allergen. 1 hit.
[Graphical view]
PIRSFiPIRSF002697. Amb_V_allergen. 1 hit.
SMARTiSM00816. Amb_V_allergen. 1 hit.
[Graphical view]
SUPFAMiSSF57296. SSF57296. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P10414-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKNIFMLTLF ILIITSTIKA IGSTNEVDEI KQEDDGLCYE GTNCGKVGKY
60 70
CCSPIGKYCV CYDSKAICNK NCT
Length:73
Mass (Da):8,058
Last modified:August 1, 1992 - v2
Checksum:i23B412AF6A8BA143
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X56279 mRNA. Translation: CAA39726.1.
M38782 mRNA. Translation: AAB02877.1.
PIRiJQ1001. ARRA5G.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X56279 mRNA. Translation: CAA39726.1.
M38782 mRNA. Translation: AAB02877.1.
PIRiJQ1001. ARRA5G.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1BBGNMR-A34-73[»]
2BBGNMR-A34-73[»]
3BBGNMR-A34-73[»]
ProteinModelPortaliP10414.
SMRiP10414. Positions 34-73.
ModBaseiSearch...
MobiDBiSearch...

Protein family/group databases

Allergomei3074. Amb t 5.0101.
32. Amb t 5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Miscellaneous databases

EvolutionaryTraceiP10414.

Family and domain databases

Gene3Di3.30.160.80. 1 hit.
InterProiIPR005611. Amb_V_allergen.
[Graphical view]
PfamiPF03913. Amb_V_allergen. 1 hit.
[Graphical view]
PIRSFiPIRSF002697. Amb_V_allergen. 1 hit.
SMARTiSM00816. Amb_V_allergen. 1 hit.
[Graphical view]
SUPFAMiSSF57296. SSF57296. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiMPAT5_AMBTR
AccessioniPrimary (citable) accession number: P10414
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 1989
Last sequence update: August 1, 1992
Last modified: May 11, 2016
This is version 90 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Direct protein sequencing

Documents

  1. Allergens
    Nomenclature of allergens and list of entries
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.