P10398 (ARAF_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 29, 2013.
Version 160.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Serine/threonine-protein kinase A-Raf EC=2.7.11.1 Alternative name(s): Proto-oncogene A-Raf Proto-oncogene A-Raf-1 Proto-oncogene Pks | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 606 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Involved in the transduction of mitogenic signals from the cell membrane to the nucleus. Ref.3 Isoform 2: Serves as a positive regulator of myogenic differentiation by inducing cell cycle arrest, the expression of myogenin and other muscle-specific proteins, and myotube formation. Ref.3 |
| Catalytic activity | ATP + a protein = ADP + a phosphoprotein. |
| Cofactor | Binds 2 zinc ions per subunit By similarity. |
| Subunit structure | Interacts with TH1L/NELFD. Ref.9 |
| Tissue specificity | Predominantly in urogenital tissues. |
| Sequence similarities | Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. RAF subfamily. Contains 1 phorbol-ester/DAG-type zinc finger. Contains 1 protein kinase domain. Contains 1 RBD (Ras-binding) domain. |
Ontologies
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| ASS1 | P00966 | 4 | EBI-365961,EBI-536842 | |
| COPS3 | Q9UNS2 | 3 | EBI-365961,EBI-350590 | |
| CPS1 | P31327 | 3 | EBI-365961,EBI-536811 | |
| EFEMP1 | Q12805 | 3 | EBI-365961,EBI-536772 | |
| HSP90AB1 | P08238 | 3 | EBI-365961,EBI-352572 | |
| IRAK2 | O43187 | 2 | EBI-365961,EBI-447733 | |
| IRF7 | Q92985 | 2 | EBI-365961,EBI-968267 | |
| MAP2K2 | P36507 | 4 | EBI-365961,EBI-1056930 | |
| NELFCD | Q8IXH7 | 5 | EBI-365961,EBI-536725 | |
| NUDT14 | O95848 | 3 | EBI-365961,EBI-536866 | |
| PBK | Q96KB5 | 3 | EBI-365961,EBI-536853 | |
| PRPF6 | O94906 | 4 | EBI-365961,EBI-536755 | |
| RABGGTB | P53611 | 3 | EBI-365961,EBI-536715 | |
| RRAS2 | P62070 | 3 | EBI-365961,EBI-491037 | |
| TIMM44 | O43615 | 3 | EBI-365961,EBI-861737 | |
| TIMM50 | Q3ZCQ8 | 3 | EBI-365961,EBI-355175 | |
| TIRAP | P58753 | 2 | EBI-365961,EBI-528644 |
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: P10398-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: P10398-2) Also known as: DA-Raf1; The sequence of this isoform differs from the canonical sequence as follows: 186-186: S → R 187-606: Missing. | ||||||
| Note: Has a wider tissue distribution than isoform 1, and acts as dominant-negative antagonist. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||||||||||||||||
Molecule processing | |||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 606 | 606 | Serine/threonine-protein kinase A-Raf | PRO_0000085622 | |||||||||||||||||||||
Regions | |||||||||||||||||||||||||
| Domain | 19 – 91 | 73 | RBD | ||||||||||||||||||||||
| Domain | 310 – 570 | 261 | Protein kinase | ||||||||||||||||||||||
| Zinc finger | 98 – 144 | 47 | Phorbol-ester/DAG-type | ||||||||||||||||||||||
| Nucleotide binding | 316 – 324 | 9 | ATP By similarity | ||||||||||||||||||||||
Sites | |||||||||||||||||||||||||
| Active site | 429 | 1 | Proton acceptor By similarity | ||||||||||||||||||||||
| Metal binding | 99 | 1 | Zinc 1 By similarity | ||||||||||||||||||||||
| Metal binding | 112 | 1 | Zinc 2 By similarity | ||||||||||||||||||||||
| Metal binding | 115 | 1 | Zinc 2 By similarity | ||||||||||||||||||||||
| Metal binding | 125 | 1 | Zinc 1 By similarity | ||||||||||||||||||||||
| Metal binding | 128 | 1 | Zinc 1 By similarity | ||||||||||||||||||||||
| Metal binding | 133 | 1 | Zinc 2 By similarity | ||||||||||||||||||||||
| Metal binding | 136 | 1 | Zinc 2 By similarity | ||||||||||||||||||||||
| Metal binding | 144 | 1 | Zinc 1 By similarity | ||||||||||||||||||||||
| Binding site | 336 | 1 | ATP By similarity | ||||||||||||||||||||||
Amino acid modifications | |||||||||||||||||||||||||
| Modified residue | 186 | 1 | Phosphoserine Ref.13 | ||||||||||||||||||||||
| Modified residue | 257 | 1 | Phosphoserine Ref.11 | ||||||||||||||||||||||
| Modified residue | 318 | 1 | Phosphothreonine Ref.15 | ||||||||||||||||||||||
Natural variations | |||||||||||||||||||||||||
| Alternative sequence | 186 | 1 | S → R in isoform 2. | VSP_045609 | |||||||||||||||||||||
| Alternative sequence | 187 – 606 | 420 | Missing in isoform 2. | VSP_045610 | |||||||||||||||||||||
| Natural variant | 98 | 1 | M → T. Ref.20 Corresponds to variant rs56197559 [ dbSNP | Ensembl ]. | VAR_040375 | |||||||||||||||||||||
| Natural variant | 331 | 1 | G → C in a colorectal adenocarcinoma sample; somatic mutation. Ref.20 | VAR_040376 | |||||||||||||||||||||
| Natural variant | 578 | 1 | E → D. Ref.20 Corresponds to variant rs55852926 [ dbSNP | Ensembl ]. | VAR_040377 | |||||||||||||||||||||
Experimental info | |||||||||||||||||||||||||
| Sequence conflict | 368 | 1 | L → P in AAB08754. Ref.8 | ||||||||||||||||||||||
| Sequence conflict | 378 | 1 | F → V in AAB08754. Ref.8 | ||||||||||||||||||||||
| Sequence conflict | 469 | 1 | S → P in AAB08754. Ref.8 | ||||||||||||||||||||||
| Sequence conflict | 478 | 1 | I → T in AAB08754. Ref.8 | ||||||||||||||||||||||
Secondary structure | |||||||||||||||||||||||||
Helix Strand Turn | |||||||||||||||||||||||||
| Beta strand | 19 – 24 | 6 | |||||||||||||||||||||||
| Beta strand | 26 – 28 | 3 | |||||||||||||||||||||||
| Beta strand | 30 – 34 | 5 | |||||||||||||||||||||||
| Helix | 42 – 50 | 9 | |||||||||||||||||||||||
| Beta strand | 56 – 67 | 12 | |||||||||||||||||||||||
| Beta strand | 69 – 72 | 4 | |||||||||||||||||||||||
| Beta strand | 74 – 78 | 5 | |||||||||||||||||||||||
| Beta strand | 85 – 90 | 6 | |||||||||||||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "The complete coding sequence of the human A-raf-1 oncogene and transforming activity of a human A-raf carrying retrovirus." Beck T.W., Huleihel M., Gunnell M., Bonner T.I., Rapp U.R. Nucleic Acids Res. 15:595-609(1987) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). |
| [2] | "The complete sequence and promoter activity of the human A-raf-1 gene (ARAF1)." Lee J.-E., Beck T.W., Brennscheidt U., DeGennaro L.J., Rapp U.R. Genomics 20:43-55(1994) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. Tissue: Placenta. |
| [3] | "DA-Raf1, a competent intrinsic dominant-negative antagonist of the Ras-ERK pathway, is required for myogenic differentiation." Yokoyama T., Takano K., Yoshida A., Katada F., Sun P., Takenawa T., Andoh T., Endo T. J. Cell Biol. 177:781-793(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2), FUNCTION (ISOFORM 2), ALTERNATIVE SPLICING. |
| [4] | "Cloning of human full-length CDSs in BD Creator(TM) system donor vector." Kalnine N., Chen X., Rolfs A., Halleck A., Hines L., Eisenstein S., Koundinya M., Raphael J., Moreira D., Kelley T., LaBaer J., Lin Y., Phelan M., Farmer A. Submitted (MAY-2003) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). |
| [5] | "Full-length cDNA libraries and normalization." Li W.B., Gruber C., Jessee J., Polayes D. Submitted (APR-2003) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). Tissue: Placenta. |
| [6] | "The DNA sequence of the human X chromosome." Ross M.T., Grafham D.V., Coffey A.J., Scherer S., McLay K., Muzny D., Platzer M., Howell G.R., Burrows C., Bird C.P., Frankish A., Lovell F.L., Howe K.L., Ashurst J.L., Fulton R.S., Sudbrak R., Wen G., Jones M.C. Bentley D.R.Nature 434:325-337(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [7] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Tissue: Kidney. |
| [8] | "Pks, a raf-related sequence in humans." Mark G.E., Seeley T.W., Shows T.B., Mountz J.D. Proc. Natl. Acad. Sci. U.S.A. 83:6312-6316(1986) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 292-589 (ISOFORM 1). |
| [9] | "Identification of TH1 as an interaction partner of A-Raf kinase." Yin X.L., Chen S., Gu J.X. Mol. Cell. Biochem. 231:69-74(2002) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH NELFD. |
| [10] | "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks." Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M. Cell 127:635-648(2006) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. Tissue: Cervix carcinoma. |
| [11] | "A probability-based approach for high-throughput protein phosphorylation analysis and site localization." Beausoleil S.A., Villen J., Gerber S.A., Rush J., Gygi S.P. Nat. Biotechnol. 24:1285-1292(2006) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-257, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [12] | "Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis." Cantin G.T., Yi W., Lu B., Park S.K., Xu T., Lee J.-D., Yates J.R. III J. Proteome Res. 7:1346-1351(2008) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. Tissue: Cervix carcinoma. |
| [13] | "Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle." Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R., Greff Z., Keri G., Stemmann O., Mann M. Mol. Cell 31:438-448(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-186, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [14] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. Tissue: Cervix carcinoma. |
| [15] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-318, MASS SPECTROMETRY. Tissue: Leukemic T-cell. |
| [16] | "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis." Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M. Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. Tissue: Cervix carcinoma. |
| [17] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [18] | "System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation." Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J., Johansen P.T., Kratchmarova I., Kassem M., Mann M., Olsen J.V., Blagoev B. Sci. Signal. 4:RS3-RS3(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [19] | "Solution structure of the N-terminal RAS-binding domain (RBD) in human A-RAF kinase." RIKEN structural genomics initiative (RSGI) Submitted (JUL-2005) to the PDB data bank Cited for: STRUCTURE BY NMR OF 19-91. |
| [20] | "Patterns of somatic mutation in human cancer genomes." Greenman C., Stephens P., Smith R., Dalgliesh G.L., Hunter C., Bignell G., Davies H., Teague J., Butler A., Stevens C., Edkins S., O'Meara S., Vastrik I., Schmidt E.E., Avis T., Barthorpe S., Bhamra G., Buck G. Stratton M.R.Nature 446:153-158(2007) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS [LARGE SCALE ANALYSIS] THR-98; CYS-331 AND ASP-578. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | X04790 mRNA. Translation: CAA28476.1. L24038 Genomic DNA. Translation: AAA65219.1. U01337 Genomic DNA. Translation: AAB03517.1. AB158254 mRNA. Translation: BAE66645.1. BT019864 mRNA. Translation: AAV38667.1. AL542736 mRNA. No translation available. Z84466 Genomic DNA. Translation: CAI42468.1. Z84466 Genomic DNA. Translation: CAI42469.1. BC002466 mRNA. Translation: AAH02466.1. M13829 mRNA. Translation: AAB08754.1. | ||||||||||||
| IPI | IPI00020578. IPI00872240. | ||||||||||||
| PIR | TVHUAF. A53026. | ||||||||||||
| RefSeq | NP_001243125.1. NM_001256196.1. NP_001243126.1. NM_001256197.1. NP_001645.1. NM_001654.4. | ||||||||||||
| UniGene | Hs.446641. | ||||||||||||
3D structure databases | |||||||||||||
| PDBe RCSB PDB PDBj |
| ||||||||||||
| ProteinModelPortal | P10398. | ||||||||||||
| ModBase | Search... | ||||||||||||
Protein-protein interaction databases | |||||||||||||
| DIP | DIP-31374N. | ||||||||||||
| IntAct | P10398. 33 interactions. | ||||||||||||
| MINT | MINT-88835. | ||||||||||||
| STRING | 9606.ENSP00000366244. | ||||||||||||
PTM databases | |||||||||||||
| PhosphoSite | P10398. | ||||||||||||
Polymorphism databases | |||||||||||||
| DMDM | 1730068. | ||||||||||||
Proteomic databases | |||||||||||||
| PaxDb | P10398. | ||||||||||||
| PRIDE | P10398. | ||||||||||||
Protocols and materials databases | |||||||||||||
| DNASU | 369. | ||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||
Genome annotation databases | |||||||||||||
| Ensembl | ENST00000377039; ENSP00000366238; ENSG00000078061. ENST00000377045; ENSP00000366244; ENSG00000078061. | ||||||||||||
| GeneID | 369. | ||||||||||||
| KEGG | hsa:369. | ||||||||||||
| UCSC | uc011mlp.2. human. | ||||||||||||
Organism-specific databases | |||||||||||||
| CTD | 369. | ||||||||||||
| GeneCards | GC0XP047429. | ||||||||||||
| HGNC | HGNC:646. ARAF. | ||||||||||||
| MIM | 311010. gene. | ||||||||||||
| neXtProt | NX_P10398. | ||||||||||||
| PharmGKB | PA24928. | ||||||||||||
| GenAtlas | Search... | ||||||||||||
Phylogenomic databases | |||||||||||||
| eggNOG | COG0515. | ||||||||||||
| HOGENOM | HOG000252972. | ||||||||||||
| HOVERGEN | HBG001886. | ||||||||||||
| KO | K08845. | ||||||||||||
| OMA | LFHTTRL. | ||||||||||||
| OrthoDB | EOG4CRKZT. | ||||||||||||
Enzyme and pathway databases | |||||||||||||
| BRENDA | 2.7.10.2. 2681. | ||||||||||||
| SignaLink | P10398. | ||||||||||||
Gene expression databases | |||||||||||||
| ArrayExpress | P10398. | ||||||||||||
| Bgee | P10398. | ||||||||||||
| CleanEx | HS_ARAF. | ||||||||||||
| Genevestigator | P10398. | ||||||||||||
| GermOnline | ENSG00000078061. Homo sapiens. | ||||||||||||
Family and domain databases | |||||||||||||
| InterPro | IPR020454. DAG/PE-bd. IPR011009. Kinase-like_dom. IPR002219. Prot_Kinase_C-like_PE/DAG-bd. IPR000719. Prot_kinase_cat_dom. IPR017441. Protein_kinase_ATP_BS. IPR003116. Raf-like_ras-bd. IPR001245. Ser-Thr/Tyr_kinase_cat_dom. IPR008271. Ser/Thr_kinase_AS. [Graphical view] | ||||||||||||
| Pfam | PF00130. C1_1. 1 hit. PF07714. Pkinase_Tyr. 1 hit. PF02196. RBD. 1 hit. [Graphical view] | ||||||||||||
| PRINTS | PR00008. DAGPEDOMAIN. | ||||||||||||
| SMART | SM00109. C1. 1 hit. SM00455. RBD. 1 hit. [Graphical view] | ||||||||||||
| SUPFAM | SSF56112. Kinase_like. 1 hit. | ||||||||||||
| PROSITE | PS00107. PROTEIN_KINASE_ATP. 1 hit. PS50011. PROTEIN_KINASE_DOM. 1 hit. PS00108. PROTEIN_KINASE_ST. 1 hit. PS50898. RBD. 1 hit. PS00479. ZF_DAG_PE_1. 1 hit. PS50081. ZF_DAG_PE_2. 1 hit. [Graphical view] | ||||||||||||
| ProtoNet | Search... | ||||||||||||
Other | |||||||||||||
| ChEMBL | CHEMBL1169596. | ||||||||||||
| DrugBank | DB00171. Adenosine triphosphate. | ||||||||||||
| EvolutionaryTrace | P10398. | ||||||||||||
| GenomeRNAi | 369. | ||||||||||||
| NextBio | 1545. | ||||||||||||
| SOURCE | Search... | ||||||||||||
Entry information
| Entry name | ARAF_HUMAN | ||||||||
| Accession | Primary (citable) accession number: P10398 Secondary accession number(s): P07557, Q5H9B2, Q5H9B3 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human and mouse protein kinases Human and mouse protein kinases: classification and index |
| Human chromosome X Human chromosome X: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with
