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P0DJ93

- SIM13_HUMAN

UniProt

P0DJ93 - SIM13_HUMAN

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Protein

Small integral membrane protein 13

Gene

SMIM13

Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Names & Taxonomyi

Protein namesi
Recommended name:
Small integral membrane protein 13
Gene namesi
Name:SMIM13
Synonyms:C6orf228
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 6

Organism-specific databases

HGNCiHGNC:27356. SMIM13.

Subcellular locationi

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 9191Small integral membrane protein 13PRO_0000414060Add
BLAST

Proteomic databases

MaxQBiP0DJ93.
PRIDEiP0DJ93.

PTM databases

PhosphoSiteiP0DJ93.

Expressioni

Gene expression databases

BgeeiP0DJ93.

Structurei

3D structure databases

ProteinModelPortaliP0DJ93.
ModBaseiSearch...
MobiDBiSearch...

Transmembrane

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei10 – 3021HelicalSequence AnalysisAdd
BLAST

Family & Domainsi

Sequence similaritiesi

Belongs to the SMIM13 family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

GeneTreeiENSGT00560000078630.
InParanoidiP0DJ93.
OMAiQEGDHEP.
OrthoDBiEOG7CRTTB.

Sequencei

Sequence statusi: Complete.

P0DJ93-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MWHSVGLTLL VFVATLLIVL LLMVCGWYFV WHLFLSKFKF LRELVGDTGS
60 70 80 90
QEGDHEPSGS ETEEDTSSSP HRIRSARQRR APADEGHRPL T
Length:91
Mass (Da):10,351
Last modified:December 14, 2011 - v1
Checksum:i9394704F780C22A7
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL136139 Genomic DNA. No translation available.
BC032356 mRNA. No translation available.
CCDSiCCDS56396.1.
RefSeqiNP_001129047.1. NM_001135575.1.
UniGeneiHs.656600.

Genome annotation databases

EnsembliENST00000376935; ENSP00000452219; ENSG00000224531.
ENST00000416247; ENSP00000451866; ENSG00000224531.
GeneIDi221710.
KEGGihsa:221710.
UCSCiuc011dio.2. human.

Polymorphism databases

DMDMi363579843.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL136139 Genomic DNA. No translation available.
BC032356 mRNA. No translation available.
CCDSi CCDS56396.1.
RefSeqi NP_001129047.1. NM_001135575.1.
UniGenei Hs.656600.

3D structure databases

ProteinModelPortali P0DJ93.
ModBasei Search...
MobiDBi Search...

PTM databases

PhosphoSitei P0DJ93.

Polymorphism databases

DMDMi 363579843.

Proteomic databases

MaxQBi P0DJ93.
PRIDEi P0DJ93.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000376935 ; ENSP00000452219 ; ENSG00000224531 .
ENST00000416247 ; ENSP00000451866 ; ENSG00000224531 .
GeneIDi 221710.
KEGGi hsa:221710.
UCSCi uc011dio.2. human.

Organism-specific databases

CTDi 221710.
GeneCardsi GC06P011097.
HGNCi HGNC:27356. SMIM13.
neXtProti NX_P0DJ93.
GenAtlasi Search...

Phylogenomic databases

GeneTreei ENSGT00560000078630.
InParanoidi P0DJ93.
OMAi QEGDHEP.
OrthoDBi EOG7CRTTB.

Miscellaneous databases

GenomeRNAii 221710.
NextBioi 91421.

Gene expression databases

Bgeei P0DJ93.

Family and domain databases

ProtoNeti Search...

Publicationsi

  1. "The DNA sequence and analysis of human chromosome 6."
    Mungall A.J., Palmer S.A., Sims S.K., Edwards C.A., Ashurst J.L., Wilming L., Jones M.C., Horton R., Hunt S.E., Scott C.E., Gilbert J.G.R., Clamp M.E., Bethel G., Milne S., Ainscough R., Almeida J.P., Ambrose K.D., Andrews T.D.
    , Ashwell R.I.S., Babbage A.K., Bagguley C.L., Bailey J., Banerjee R., Barker D.J., Barlow K.F., Bates K., Beare D.M., Beasley H., Beasley O., Bird C.P., Blakey S.E., Bray-Allen S., Brook J., Brown A.J., Brown J.Y., Burford D.C., Burrill W., Burton J., Carder C., Carter N.P., Chapman J.C., Clark S.Y., Clark G., Clee C.M., Clegg S., Cobley V., Collier R.E., Collins J.E., Colman L.K., Corby N.R., Coville G.J., Culley K.M., Dhami P., Davies J., Dunn M., Earthrowl M.E., Ellington A.E., Evans K.A., Faulkner L., Francis M.D., Frankish A., Frankland J., French L., Garner P., Garnett J., Ghori M.J., Gilby L.M., Gillson C.J., Glithero R.J., Grafham D.V., Grant M., Gribble S., Griffiths C., Griffiths M.N.D., Hall R., Halls K.S., Hammond S., Harley J.L., Hart E.A., Heath P.D., Heathcott R., Holmes S.J., Howden P.J., Howe K.L., Howell G.R., Huckle E., Humphray S.J., Humphries M.D., Hunt A.R., Johnson C.M., Joy A.A., Kay M., Keenan S.J., Kimberley A.M., King A., Laird G.K., Langford C., Lawlor S., Leongamornlert D.A., Leversha M., Lloyd C.R., Lloyd D.M., Loveland J.E., Lovell J., Martin S., Mashreghi-Mohammadi M., Maslen G.L., Matthews L., McCann O.T., McLaren S.J., McLay K., McMurray A., Moore M.J.F., Mullikin J.C., Niblett D., Nickerson T., Novik K.L., Oliver K., Overton-Larty E.K., Parker A., Patel R., Pearce A.V., Peck A.I., Phillimore B.J.C.T., Phillips S., Plumb R.W., Porter K.M., Ramsey Y., Ranby S.A., Rice C.M., Ross M.T., Searle S.M., Sehra H.K., Sheridan E., Skuce C.D., Smith S., Smith M., Spraggon L., Squares S.L., Steward C.A., Sycamore N., Tamlyn-Hall G., Tester J., Theaker A.J., Thomas D.W., Thorpe A., Tracey A., Tromans A., Tubby B., Wall M., Wallis J.M., West A.P., White S.S., Whitehead S.L., Whittaker H., Wild A., Willey D.J., Wilmer T.E., Wood J.M., Wray P.W., Wyatt J.C., Young L., Younger R.M., Bentley D.R., Coulson A., Durbin R.M., Hubbard T., Sulston J.E., Dunham I., Rogers J., Beck S.
    Nature 425:805-811(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Bone marrow.

Entry informationi

Entry nameiSIM13_HUMAN
AccessioniPrimary (citable) accession number: P0DJ93
Secondary accession number(s): G3V581
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 14, 2011
Last sequence update: December 14, 2011
Last modified: October 29, 2014
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 6
    Human chromosome 6: entries, gene names and cross-references to MIM
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3