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P0DJ93

- SIM13_HUMAN

UniProt

P0DJ93 - SIM13_HUMAN

Protein

Small integral membrane protein 13

Gene

SMIM13

Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
  1. Names & Taxonomyi

    Protein namesi
    Recommended name:
    Small integral membrane protein 13
    Gene namesi
    Name:SMIM13
    Synonyms:C6orf228
    OrganismiHomo sapiens (Human)
    Taxonomic identifieri9606 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
    ProteomesiUP000005640: Chromosome 6

    Organism-specific databases

    HGNCiHGNC:27356. SMIM13.

    Subcellular locationi

    GO - Cellular componenti

    1. integral component of membrane Source: UniProtKB-KW

    Keywords - Cellular componenti

    Membrane

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 9191Small integral membrane protein 13PRO_0000414060Add
    BLAST

    Proteomic databases

    MaxQBiP0DJ93.
    PRIDEiP0DJ93.

    PTM databases

    PhosphoSiteiP0DJ93.

    Expressioni

    Gene expression databases

    BgeeiP0DJ93.

    Structurei

    3D structure databases

    ProteinModelPortaliP0DJ93.
    ModBaseiSearch...
    MobiDBiSearch...

    Transmembrane

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transmembranei10 – 3021HelicalSequence AnalysisAdd
    BLAST

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the SMIM13 family.Curated

    Keywords - Domaini

    Transmembrane, Transmembrane helix

    Phylogenomic databases

    OMAiQEGDHEP.
    OrthoDBiEOG7CRTTB.

    Sequencei

    Sequence statusi: Complete.

    P0DJ93-1 [UniParc]FASTAAdd to Basket

    « Hide

    MWHSVGLTLL VFVATLLIVL LLMVCGWYFV WHLFLSKFKF LRELVGDTGS   50
    QEGDHEPSGS ETEEDTSSSP HRIRSARQRR APADEGHRPL T 91
    Length:91
    Mass (Da):10,351
    Last modified:December 14, 2011 - v1
    Checksum:i9394704F780C22A7
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL136139 Genomic DNA. No translation available.
    BC032356 mRNA. No translation available.
    CCDSiCCDS56396.1.
    RefSeqiNP_001129047.1. NM_001135575.1.
    UniGeneiHs.656600.

    Genome annotation databases

    EnsembliENST00000376935; ENSP00000452219; ENSG00000224531.
    ENST00000416247; ENSP00000451866; ENSG00000224531.
    GeneIDi221710.
    KEGGihsa:221710.
    UCSCiuc011dio.2. human.

    Polymorphism databases

    DMDMi363579843.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL136139 Genomic DNA. No translation available.
    BC032356 mRNA. No translation available.
    CCDSi CCDS56396.1.
    RefSeqi NP_001129047.1. NM_001135575.1.
    UniGenei Hs.656600.

    3D structure databases

    ProteinModelPortali P0DJ93.
    ModBasei Search...
    MobiDBi Search...

    PTM databases

    PhosphoSitei P0DJ93.

    Polymorphism databases

    DMDMi 363579843.

    Proteomic databases

    MaxQBi P0DJ93.
    PRIDEi P0DJ93.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENST00000376935 ; ENSP00000452219 ; ENSG00000224531 .
    ENST00000416247 ; ENSP00000451866 ; ENSG00000224531 .
    GeneIDi 221710.
    KEGGi hsa:221710.
    UCSCi uc011dio.2. human.

    Organism-specific databases

    CTDi 221710.
    GeneCardsi GC06P011097.
    HGNCi HGNC:27356. SMIM13.
    neXtProti NX_P0DJ93.
    GenAtlasi Search...

    Phylogenomic databases

    OMAi QEGDHEP.
    OrthoDBi EOG7CRTTB.

    Miscellaneous databases

    GenomeRNAii 221710.
    NextBioi 91421.

    Gene expression databases

    Bgeei P0DJ93.

    Family and domain databases

    ProtoNeti Search...

    Publicationsi

    1. "The DNA sequence and analysis of human chromosome 6."
      Mungall A.J., Palmer S.A., Sims S.K., Edwards C.A., Ashurst J.L., Wilming L., Jones M.C., Horton R., Hunt S.E., Scott C.E., Gilbert J.G.R., Clamp M.E., Bethel G., Milne S., Ainscough R., Almeida J.P., Ambrose K.D., Andrews T.D.
      , Ashwell R.I.S., Babbage A.K., Bagguley C.L., Bailey J., Banerjee R., Barker D.J., Barlow K.F., Bates K., Beare D.M., Beasley H., Beasley O., Bird C.P., Blakey S.E., Bray-Allen S., Brook J., Brown A.J., Brown J.Y., Burford D.C., Burrill W., Burton J., Carder C., Carter N.P., Chapman J.C., Clark S.Y., Clark G., Clee C.M., Clegg S., Cobley V., Collier R.E., Collins J.E., Colman L.K., Corby N.R., Coville G.J., Culley K.M., Dhami P., Davies J., Dunn M., Earthrowl M.E., Ellington A.E., Evans K.A., Faulkner L., Francis M.D., Frankish A., Frankland J., French L., Garner P., Garnett J., Ghori M.J., Gilby L.M., Gillson C.J., Glithero R.J., Grafham D.V., Grant M., Gribble S., Griffiths C., Griffiths M.N.D., Hall R., Halls K.S., Hammond S., Harley J.L., Hart E.A., Heath P.D., Heathcott R., Holmes S.J., Howden P.J., Howe K.L., Howell G.R., Huckle E., Humphray S.J., Humphries M.D., Hunt A.R., Johnson C.M., Joy A.A., Kay M., Keenan S.J., Kimberley A.M., King A., Laird G.K., Langford C., Lawlor S., Leongamornlert D.A., Leversha M., Lloyd C.R., Lloyd D.M., Loveland J.E., Lovell J., Martin S., Mashreghi-Mohammadi M., Maslen G.L., Matthews L., McCann O.T., McLaren S.J., McLay K., McMurray A., Moore M.J.F., Mullikin J.C., Niblett D., Nickerson T., Novik K.L., Oliver K., Overton-Larty E.K., Parker A., Patel R., Pearce A.V., Peck A.I., Phillimore B.J.C.T., Phillips S., Plumb R.W., Porter K.M., Ramsey Y., Ranby S.A., Rice C.M., Ross M.T., Searle S.M., Sehra H.K., Sheridan E., Skuce C.D., Smith S., Smith M., Spraggon L., Squares S.L., Steward C.A., Sycamore N., Tamlyn-Hall G., Tester J., Theaker A.J., Thomas D.W., Thorpe A., Tracey A., Tromans A., Tubby B., Wall M., Wallis J.M., West A.P., White S.S., Whitehead S.L., Whittaker H., Wild A., Willey D.J., Wilmer T.E., Wood J.M., Wray P.W., Wyatt J.C., Young L., Younger R.M., Bentley D.R., Coulson A., Durbin R.M., Hubbard T., Sulston J.E., Dunham I., Rogers J., Beck S.
      Nature 425:805-811(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: Bone marrow.

    Entry informationi

    Entry nameiSIM13_HUMAN
    AccessioniPrimary (citable) accession number: P0DJ93
    Secondary accession number(s): G3V581
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: December 14, 2011
    Last sequence update: December 14, 2011
    Last modified: October 1, 2014
    This is version 20 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program
    DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Human chromosome 6
      Human chromosome 6: entries, gene names and cross-references to MIM
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3