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P0DH87

- PSRK_ARATH

UniProt

P0DH87 - PSRK_ARATH

Protein

Putative inactive G-type lectin S-receptor-like serine/threonine-protein kinase SRK

Gene

PSEUDOSRKA

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 4 out of 5- Protein uncertaini
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    • History
      Entry version 21 (01 Oct 2014)
      Sequence version 1 (19 Oct 2011)
      Previous versions | rss
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    Functioni

    Truncated and inactivated form of SRK, the female specificity determinant of self-incompatibility when active. Most A.thaliana cultivars contain such an inactive form and thus, are self-fertiles.3 Publications

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Nucleotide bindingi530 – 5389ATPBy similarity

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. calmodulin binding Source: UniProtKB
    3. protein serine/threonine kinase activity Source: UniProtKB

    GO - Biological processi

    1. defense response to bacterium, incompatible interaction Source: UniProtKB
    2. protein autophosphorylation Source: UniProtKB
    3. recognition of pollen Source: InterPro

    Keywords - Molecular functioni

    Receptor

    Keywords - Ligandi

    ATP-binding, Lectin, Nucleotide-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Putative inactive G-type lectin S-receptor-like serine/threonine-protein kinase SRK
    Alternative name(s):
    Pseudogene of S-locus receptor kinase A
    Gene namesi
    Name:PSEUDOSRKA
    Ordered Locus Names:At4g21370
    ORF Names:T6K22.100
    OrganismiArabidopsis thaliana (Mouse-ear cress)
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 4

    Organism-specific databases

    TAIRiAT4G21370.

    Subcellular locationi

    GO - Cellular componenti

    1. integral component of membrane Source: UniProtKB-KW
    2. plasma membrane Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cell membrane, Membrane

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 3131Sequence AnalysisAdd
    BLAST
    Chaini32 – 546515Putative inactive G-type lectin S-receptor-like serine/threonine-protein kinase SRKPRO_0000413168Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Glycosylationi46 – 461N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi120 – 1201N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi147 – 1471N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi243 – 2431N-linked (GlcNAc...)Sequence Analysis
    Disulfide bondi297 ↔ 309By similarity
    Disulfide bondi303 ↔ 317By similarity
    Disulfide bondi378 ↔ 403By similarity
    Disulfide bondi382 ↔ 388By similarity
    Glycosylationi387 – 3871N-linked (GlcNAc...)Sequence Analysis

    Keywords - PTMi

    Disulfide bond, Glycoprotein

    Proteomic databases

    PRIDEiP0DH87.

    Structurei

    3D structure databases

    ProteinModelPortaliP0DH87.
    SMRiP0DH87. Positions 96-209, 519-546.
    ModBaseiSearch...
    MobiDBiSearch...

    Topological domain

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Topological domaini32 – 441410ExtracellularSequence AnalysisAdd
    BLAST
    Topological domaini463 – 54684CytoplasmicSequence AnalysisAdd
    BLAST

    Transmembrane

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transmembranei442 – 46221HelicalSequence AnalysisAdd
    BLAST

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini34 – 154121Bulb-type lectinPROSITE-ProRule annotationAdd
    BLAST
    Domaini293 – 32937EGF-like; atypicalAdd
    BLAST
    Domaini348 – 42881PANPROSITE-ProRule annotationAdd
    BLAST
    Domaini524 – 54623Protein kinaseAdd
    BLAST

    Domaini

    The protein kinase domain is predicted to be catalytically inactive.

    Sequence similaritiesi

    Contains 1 bulb-type lectin domain.PROSITE-ProRule annotation
    Contains 1 EGF-like domain.Curated
    Contains 1 PAN domain.PROSITE-ProRule annotation
    Contains 1 protein kinase domain.Curated

    Keywords - Domaini

    Signal, Transmembrane, Transmembrane helix

    Family and domain databases

    Gene3Di2.90.10.10. 1 hit.
    InterProiIPR001480. Bulb-type_lectin_dom.
    IPR000742. EG-like_dom.
    IPR011009. Kinase-like_dom.
    IPR013227. PAN-2_domain.
    IPR003609. Pan_app.
    IPR022126. S-locus_recpt_kinase.
    IPR000858. S_locus_glycoprot.
    [Graphical view]
    PfamiPF01453. B_lectin. 1 hit.
    PF12398. DUF3660. 1 hit.
    PF08276. PAN_2. 1 hit.
    PF00954. S_locus_glycop. 1 hit.
    [Graphical view]
    SMARTiSM00108. B_lectin. 1 hit.
    SM00181. EGF. 1 hit.
    SM00473. PAN_AP. 1 hit.
    [Graphical view]
    SUPFAMiSSF51110. SSF51110. 1 hit.
    SSF56112. SSF56112. 1 hit.
    PROSITEiPS50927. BULB_LECTIN. 1 hit.
    PS50948. PAN. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P0DH87-1 [UniParc]FASTAAdd to Basket

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    MRGELPNKHH SYTFFVFLFF FLILFPDLSI SVNTLSATES LTISSNKTIV    50
    SPGGVFELGF FRILGDSWYL GIWYKKISQR TYVWVANRDT PLSNPIGILK 100
    ISNANLVILD NSDTHVWSTN LTGAVRSSVV AELLDNGNFV LRGSKINESD 150
    EFLWQSFDFP TDTLLPQMKL GRDHKRGLNR FVTSWKSSFD PSSGSFMFKL 200
    ETLGLPEFFG FTSFLEVYRS GPWDGLRFSG ILEMQQWDDI IYNFTENREE 250
    VAYTFRVTDH NSYSRLTINT VGRLEGFTWE PTQQEWNMFW FMPKDTCDLY 300
    GICGPYAYCD MSTSPTCNCI KGFQPLSPQD WASGDVTGRC RRKTQLTCGE 350
    DRFFRLMNMK IPATTAAIVD KRIGLKECEE KCKTHCNCTA YANSDIRNGG 400
    SGCIIWIGEF RDIRNYAADG QDLFVRLAAA EFGERRTIRG KIIGLIIGIS 450
    LMLVLSFIIY CFWKKKQKRA RATAAPIGYR DRIQELIITN GVVMSSGRRL 500
    LGEEEDLELP LTEFETVVMA TENFSDSNIL GRGGFGIVYK GRLLDG 546
    Length:546
    Mass (Da):62,093
    Last modified:October 19, 2011 - v1
    Checksum:i7815DBBCAD3878BA
    GO

    Sequence cautioni

    The sequence CAA20202.1 differs from that shown. Reason: Erroneous gene model prediction.
    The sequence CAB79136.1 differs from that shown. Reason: Erroneous gene model prediction.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL031187 Genomic DNA. Translation: CAA20202.1. Sequence problems.
    AL161554 Genomic DNA. Translation: CAB79136.1. Sequence problems.
    CP002687 Genomic DNA. No translation available.
    PIRiT05179.

    Cross-referencesi

    Web resourcesi

    PlantP kinase Classification PPC
    Protein Spotlight

    Do it yourself - Issue 128 of May 2011

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL031187 Genomic DNA. Translation: CAA20202.1 . Sequence problems.
    AL161554 Genomic DNA. Translation: CAB79136.1 . Sequence problems.
    CP002687 Genomic DNA. No translation available.
    PIRi T05179.

    3D structure databases

    ProteinModelPortali P0DH87.
    SMRi P0DH87. Positions 96-209, 519-546.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi P0DH87.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Organism-specific databases

    GeneFarmi 73. 3.
    TAIRi AT4G21370.

    Family and domain databases

    Gene3Di 2.90.10.10. 1 hit.
    InterProi IPR001480. Bulb-type_lectin_dom.
    IPR000742. EG-like_dom.
    IPR011009. Kinase-like_dom.
    IPR013227. PAN-2_domain.
    IPR003609. Pan_app.
    IPR022126. S-locus_recpt_kinase.
    IPR000858. S_locus_glycoprot.
    [Graphical view ]
    Pfami PF01453. B_lectin. 1 hit.
    PF12398. DUF3660. 1 hit.
    PF08276. PAN_2. 1 hit.
    PF00954. S_locus_glycop. 1 hit.
    [Graphical view ]
    SMARTi SM00108. B_lectin. 1 hit.
    SM00181. EGF. 1 hit.
    SM00473. PAN_AP. 1 hit.
    [Graphical view ]
    SUPFAMi SSF51110. SSF51110. 1 hit.
    SSF56112. SSF56112. 1 hit.
    PROSITEi PS50927. BULB_LECTIN. 1 hit.
    PS50948. PAN. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana."
      Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M., de Simone V., Obermaier B.
      , Mache R., Mueller M., Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B., Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K., Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W., Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A., Martienssen R., McCombie W.R.
      Nature 402:769-777(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Columbia.
    2. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. Columbia.
    3. "Natural variation in expression of self-incompatibility in Arabidopsis thaliana: implications for the evolution of selfing."
      Nasrallah M.E., Liu P., Sherman-Broyles S., Boggs N.A., Nasrallah J.B.
      Proc. Natl. Acad. Sci. U.S.A. 101:16070-16074(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: FUNCTION.
    4. "S locus genes and the evolution of self-fertility in Arabidopsis thaliana."
      Sherman-Broyles S., Boggs N., Farkas A., Liu P., Vrebalov J., Nasrallah M.E., Nasrallah J.B.
      Plant Cell 19:94-106(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: FUNCTION, REVIEW.
    5. Cited for: FUNCTION.

    Entry informationi

    Entry nameiPSRK_ARATH
    AccessioniPrimary (citable) accession number: P0DH87
    Secondary accession number(s): B0F2A9
    , B0F2B0, D6NTN9, D6NTP0, D6NTP1, D6NTP2, D6NTP6, D6NTP7, D6NTP8, O81904
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: October 19, 2011
    Last sequence update: October 19, 2011
    Last modified: October 1, 2014
    This is version 21 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Caution

    Could be the product of a pseudogene. In strain cv. Columbia, a frameshift mutation introduces a premature stop codon leading to a truncated SRK protein. A complete sequence for SRK can be found in strains cv. Pog-0 and cv. Wei-1 (AC P0DH86).Curated

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Arabidopsis thaliana
      Arabidopsis thaliana: entries and gene names
    2. Protein Spotlight
      Protein Spotlight articles and cited UniProtKB/Swiss-Prot entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3