Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

P0DH87

- PSRK_ARATH

UniProt

P0DH87 - PSRK_ARATH

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein

Putative inactive G-type lectin S-receptor-like serine/threonine-protein kinase SRK

Gene

PSEUDOSRKA

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 4 out of 5- Protein uncertaini

Functioni

Truncated and inactivated form of SRK, the female specificity determinant of self-incompatibility when active. Most A.thaliana cultivars contain such an inactive form and thus, are self-fertiles.3 Publications

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi530 – 5389ATPBy similarity

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. calmodulin binding Source: UniProtKB
  3. carbohydrate binding Source: UniProtKB-KW
  4. protein serine/threonine kinase activity Source: UniProtKB

GO - Biological processi

  1. defense response to bacterium, incompatible interaction Source: UniProtKB
  2. protein autophosphorylation Source: UniProtKB
  3. recognition of pollen Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Receptor

Keywords - Ligandi

ATP-binding, Lectin, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Putative inactive G-type lectin S-receptor-like serine/threonine-protein kinase SRK
Alternative name(s):
Pseudogene of S-locus receptor kinase A
Gene namesi
Name:PSEUDOSRKA
Ordered Locus Names:At4g21370
ORF Names:T6K22.100
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548: Chromosome 4

Organism-specific databases

TAIRiAT4G21370.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini32 – 441410ExtracellularSequence AnalysisAdd
BLAST
Transmembranei442 – 46221HelicalSequence AnalysisAdd
BLAST
Topological domaini463 – 54684CytoplasmicSequence AnalysisAdd
BLAST

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
  2. plasma membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 3131Sequence AnalysisAdd
BLAST
Chaini32 – 546515Putative inactive G-type lectin S-receptor-like serine/threonine-protein kinase SRKPRO_0000413168Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi46 – 461N-linked (GlcNAc...)Sequence Analysis
Glycosylationi120 – 1201N-linked (GlcNAc...)Sequence Analysis
Glycosylationi147 – 1471N-linked (GlcNAc...)Sequence Analysis
Glycosylationi243 – 2431N-linked (GlcNAc...)Sequence Analysis
Disulfide bondi297 ↔ 309By similarity
Disulfide bondi303 ↔ 317By similarity
Disulfide bondi378 ↔ 403By similarity
Disulfide bondi382 ↔ 388By similarity
Glycosylationi387 – 3871N-linked (GlcNAc...)Sequence Analysis

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

PRIDEiP0DH87.

Structurei

3D structure databases

ProteinModelPortaliP0DH87.
SMRiP0DH87. Positions 96-209, 519-546.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini34 – 154121Bulb-type lectinPROSITE-ProRule annotationAdd
BLAST
Domaini293 – 32937EGF-like; atypicalAdd
BLAST
Domaini348 – 42881PANPROSITE-ProRule annotationAdd
BLAST
Domaini524 – 54623Protein kinaseAdd
BLAST

Domaini

The protein kinase domain is predicted to be catalytically inactive.

Sequence similaritiesi

Contains 1 bulb-type lectin domain.PROSITE-ProRule annotation
Contains 1 EGF-like domain.Curated
Contains 1 PAN domain.PROSITE-ProRule annotation
Contains 1 protein kinase domain.Curated

Keywords - Domaini

Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

InParanoidiP0DH87.

Family and domain databases

Gene3Di2.90.10.10. 1 hit.
InterProiIPR001480. Bulb-type_lectin_dom.
IPR000742. EG-like_dom.
IPR011009. Kinase-like_dom.
IPR013227. PAN-2_domain.
IPR003609. Pan_app.
IPR022126. S-locus_recpt_kinase.
IPR000858. S_locus_glycoprot.
[Graphical view]
PfamiPF01453. B_lectin. 1 hit.
PF12398. DUF3660. 1 hit.
PF08276. PAN_2. 1 hit.
PF00954. S_locus_glycop. 1 hit.
[Graphical view]
SMARTiSM00108. B_lectin. 1 hit.
SM00181. EGF. 1 hit.
SM00473. PAN_AP. 1 hit.
[Graphical view]
SUPFAMiSSF51110. SSF51110. 1 hit.
SSF56112. SSF56112. 1 hit.
PROSITEiPS50927. BULB_LECTIN. 1 hit.
PS50948. PAN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P0DH87-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MRGELPNKHH SYTFFVFLFF FLILFPDLSI SVNTLSATES LTISSNKTIV
60 70 80 90 100
SPGGVFELGF FRILGDSWYL GIWYKKISQR TYVWVANRDT PLSNPIGILK
110 120 130 140 150
ISNANLVILD NSDTHVWSTN LTGAVRSSVV AELLDNGNFV LRGSKINESD
160 170 180 190 200
EFLWQSFDFP TDTLLPQMKL GRDHKRGLNR FVTSWKSSFD PSSGSFMFKL
210 220 230 240 250
ETLGLPEFFG FTSFLEVYRS GPWDGLRFSG ILEMQQWDDI IYNFTENREE
260 270 280 290 300
VAYTFRVTDH NSYSRLTINT VGRLEGFTWE PTQQEWNMFW FMPKDTCDLY
310 320 330 340 350
GICGPYAYCD MSTSPTCNCI KGFQPLSPQD WASGDVTGRC RRKTQLTCGE
360 370 380 390 400
DRFFRLMNMK IPATTAAIVD KRIGLKECEE KCKTHCNCTA YANSDIRNGG
410 420 430 440 450
SGCIIWIGEF RDIRNYAADG QDLFVRLAAA EFGERRTIRG KIIGLIIGIS
460 470 480 490 500
LMLVLSFIIY CFWKKKQKRA RATAAPIGYR DRIQELIITN GVVMSSGRRL
510 520 530 540
LGEEEDLELP LTEFETVVMA TENFSDSNIL GRGGFGIVYK GRLLDG
Length:546
Mass (Da):62,093
Last modified:October 19, 2011 - v1
Checksum:i7815DBBCAD3878BA
GO

Sequence cautioni

The sequence CAA20202.1 differs from that shown. Reason: Erroneous gene model prediction. Curated
The sequence CAB79136.1 differs from that shown. Reason: Erroneous gene model prediction. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL031187 Genomic DNA. Translation: CAA20202.1. Sequence problems.
AL161554 Genomic DNA. Translation: CAB79136.1. Sequence problems.
CP002687 Genomic DNA. No translation available.
PIRiT05179.

Cross-referencesi

Web resourcesi

PlantP kinase Classification PPC
Protein Spotlight

Do it yourself - Issue 128 of May 2011

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL031187 Genomic DNA. Translation: CAA20202.1 . Sequence problems.
AL161554 Genomic DNA. Translation: CAB79136.1 . Sequence problems.
CP002687 Genomic DNA. No translation available.
PIRi T05179.

3D structure databases

ProteinModelPortali P0DH87.
SMRi P0DH87. Positions 96-209, 519-546.
ModBasei Search...
MobiDBi Search...

Proteomic databases

PRIDEi P0DH87.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Organism-specific databases

GeneFarmi 73. 3.
TAIRi AT4G21370.

Phylogenomic databases

InParanoidi P0DH87.

Family and domain databases

Gene3Di 2.90.10.10. 1 hit.
InterProi IPR001480. Bulb-type_lectin_dom.
IPR000742. EG-like_dom.
IPR011009. Kinase-like_dom.
IPR013227. PAN-2_domain.
IPR003609. Pan_app.
IPR022126. S-locus_recpt_kinase.
IPR000858. S_locus_glycoprot.
[Graphical view ]
Pfami PF01453. B_lectin. 1 hit.
PF12398. DUF3660. 1 hit.
PF08276. PAN_2. 1 hit.
PF00954. S_locus_glycop. 1 hit.
[Graphical view ]
SMARTi SM00108. B_lectin. 1 hit.
SM00181. EGF. 1 hit.
SM00473. PAN_AP. 1 hit.
[Graphical view ]
SUPFAMi SSF51110. SSF51110. 1 hit.
SSF56112. SSF56112. 1 hit.
PROSITEi PS50927. BULB_LECTIN. 1 hit.
PS50948. PAN. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana."
    Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M., de Simone V., Obermaier B.
    , Mache R., Mueller M., Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B., Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K., Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W., Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A., Martienssen R., McCombie W.R.
    Nature 402:769-777(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Natural variation in expression of self-incompatibility in Arabidopsis thaliana: implications for the evolution of selfing."
    Nasrallah M.E., Liu P., Sherman-Broyles S., Boggs N.A., Nasrallah J.B.
    Proc. Natl. Acad. Sci. U.S.A. 101:16070-16074(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION.
  4. "S locus genes and the evolution of self-fertility in Arabidopsis thaliana."
    Sherman-Broyles S., Boggs N., Farkas A., Liu P., Vrebalov J., Nasrallah M.E., Nasrallah J.B.
    Plant Cell 19:94-106(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION, REVIEW.
  5. Cited for: FUNCTION.

Entry informationi

Entry nameiPSRK_ARATH
AccessioniPrimary (citable) accession number: P0DH87
Secondary accession number(s): B0F2A9
, B0F2B0, D6NTN9, D6NTP0, D6NTP1, D6NTP2, D6NTP6, D6NTP7, D6NTP8, O81904
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 19, 2011
Last sequence update: October 19, 2011
Last modified: November 26, 2014
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Caution

Could be the product of a pseudogene. In strain cv. Columbia, a frameshift mutation introduces a premature stop codon leading to a truncated SRK protein. A complete sequence for SRK can be found in strains cv. Pog-0 and cv. Wei-1 (AC P0DH86).Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Protein Spotlight
    Protein Spotlight articles and cited UniProtKB/Swiss-Prot entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3