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Protein

60S ribosomal protein L41-A

Gene

RPL41A

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • structural constituent of ribosome Source: SGD

GO - Biological processi

  • cytoplasmic translation Source: SGD
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciYEAST:G3O-29570-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L41-A
Alternative name(s):
L47
YL41
Gene namesi
Name:RPL41A
Synonyms:RPL47A, YL41A
Ordered Locus Names:YDL184C
ORF Names:D1290
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
Proteomesi
  • UP000002311 Componenti: Chromosome IV

Organism-specific databases

SGDiS000002343. RPL41A.

Subcellular locationi

GO - Cellular componenti

  • cytosolic large ribosomal subunit Source: SGD
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 252560S ribosomal protein L41-APRO_0000198074Add
BLAST

Expressioni

Gene expression databases

ExpressionAtlasiP0CX86. differential.

Interactioni

Subunit structurei

Component of the large ribosomal subunit. Mature ribosomes consist of a small (40S) and a large (60S) subunit. The 40S subunit contains 32 different proteins (encoded by 56 genes) and 1 molecule of RNA (18S). The 60S subunit contains 46 different proteins (encoded by 81 genes) and 3 molecules of RNA (25S, 5.8S and 5S).1 Publication

Protein-protein interaction databases

BioGridi31860. 41 interactions.
31928. 20 interactions.
MINTiMINT-4479456.

Structurei

Secondary structure

1
25
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi3 – 2220Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3J6Xelectron microscopy6.10811-25[»]
3J6Yelectron microscopy6.10811-25[»]
3J77electron microscopy6.20911-25[»]
3J78electron microscopy6.30911-25[»]
3J80electron microscopy3.75h1-25[»]
3J81electron microscopy4.00h1-25[»]
3JAMelectron microscopy3.46h1-25[»]
3JAPelectron microscopy4.90h1-25[»]
3JAQelectron microscopy6.00h1-25[»]
4U3MX-ray3.00Q1/q11-25[»]
4U3NX-ray3.20Q1/q11-25[»]
4U3UX-ray2.90Q1/q11-25[»]
4U4NX-ray3.10Q1/q11-25[»]
4U4OX-ray3.60Q1/q11-25[»]
4U4QX-ray3.00Q1/q11-25[»]
4U4RX-ray2.80Q1/q11-25[»]
4U4UX-ray3.00Q1/q11-25[»]
4U4YX-ray3.20Q1/q11-25[»]
4U4ZX-ray3.10Q1/q11-25[»]
4U53X-ray3.30Q1/q11-25[»]
4U55X-ray3.20Q1/q11-25[»]
4U56X-ray3.45Q1/q11-25[»]
4V6Ielectron microscopy8.80Bq1-25[»]
4V88X-ray3.00Bn/Dn1-25[»]
4V8Telectron microscopy8.10n1-25[»]
4V91electron microscopy3.70n1-25[»]
5DC3X-ray3.25Q1/q11-25[»]
5FCIX-ray3.40Q1/q11-25[»]
5FCJX-ray3.10Q1/q11-25[»]
5GAKelectron microscopy3.88p1-25[»]
5I4LX-ray3.10Q1/q11-25[»]
5IT7electron microscopy3.60nn1-25[»]
ProteinModelPortaliP0CX86.
SMRiP0CX86. Positions 1-26.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi2 – 2322Arg-richAdd
BLAST

Sequence similaritiesi

Belongs to the ribosomal protein L41e family.Curated

Phylogenomic databases

KOiK02928.

Family and domain databases

InterProiIPR007836. Ribosomal_L41.
[Graphical view]
PfamiPF05162. Ribosomal_L41. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0CX86-1 [UniParc]FASTAAdd to basket

« Hide

        10         20 
MRAKWRKKRT RRLKRKRRKV RARSK
Length:25
Mass (Da):3,337
Last modified:June 28, 2011 - v1
Checksum:iBD2629DD9ED85381
GO

Mass spectrometryi

Molecular mass is 3335.103 Da from positions 1 - 25. Determined by ESI. Monoisotopic mass.1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X16065 Genomic DNA. Translation: CAA34201.1.
X83276 Genomic DNA. Translation: CAA58262.1.
Z74232 Genomic DNA. Translation: CAA98759.1.
AY693059 Genomic DNA. Translation: AAT93078.1.
BK006938 Genomic DNA. Translation: DAA11678.1.
PIRiS22246. R6BY4B.
RefSeqiNP_010097.1. NM_001180244.1.
NP_010148.1. NM_001180194.1.

Genome annotation databases

EnsemblFungiiYDL133C-A; YDL133C-A; YDL133C-A.
YDL184C; YDL184C; YDL184C.
GeneIDi851344.
851422.
KEGGisce:YDL133C-A.
sce:YDL184C.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X16065 Genomic DNA. Translation: CAA34201.1.
X83276 Genomic DNA. Translation: CAA58262.1.
Z74232 Genomic DNA. Translation: CAA98759.1.
AY693059 Genomic DNA. Translation: AAT93078.1.
BK006938 Genomic DNA. Translation: DAA11678.1.
PIRiS22246. R6BY4B.
RefSeqiNP_010097.1. NM_001180244.1.
NP_010148.1. NM_001180194.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3J6Xelectron microscopy6.10811-25[»]
3J6Yelectron microscopy6.10811-25[»]
3J77electron microscopy6.20911-25[»]
3J78electron microscopy6.30911-25[»]
3J80electron microscopy3.75h1-25[»]
3J81electron microscopy4.00h1-25[»]
3JAMelectron microscopy3.46h1-25[»]
3JAPelectron microscopy4.90h1-25[»]
3JAQelectron microscopy6.00h1-25[»]
4U3MX-ray3.00Q1/q11-25[»]
4U3NX-ray3.20Q1/q11-25[»]
4U3UX-ray2.90Q1/q11-25[»]
4U4NX-ray3.10Q1/q11-25[»]
4U4OX-ray3.60Q1/q11-25[»]
4U4QX-ray3.00Q1/q11-25[»]
4U4RX-ray2.80Q1/q11-25[»]
4U4UX-ray3.00Q1/q11-25[»]
4U4YX-ray3.20Q1/q11-25[»]
4U4ZX-ray3.10Q1/q11-25[»]
4U53X-ray3.30Q1/q11-25[»]
4U55X-ray3.20Q1/q11-25[»]
4U56X-ray3.45Q1/q11-25[»]
4V6Ielectron microscopy8.80Bq1-25[»]
4V88X-ray3.00Bn/Dn1-25[»]
4V8Telectron microscopy8.10n1-25[»]
4V91electron microscopy3.70n1-25[»]
5DC3X-ray3.25Q1/q11-25[»]
5FCIX-ray3.40Q1/q11-25[»]
5FCJX-ray3.10Q1/q11-25[»]
5GAKelectron microscopy3.88p1-25[»]
5I4LX-ray3.10Q1/q11-25[»]
5IT7electron microscopy3.60nn1-25[»]
ProteinModelPortaliP0CX86.
SMRiP0CX86. Positions 1-26.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi31860. 41 interactions.
31928. 20 interactions.
MINTiMINT-4479456.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiYDL133C-A; YDL133C-A; YDL133C-A.
YDL184C; YDL184C; YDL184C.
GeneIDi851344.
851422.
KEGGisce:YDL133C-A.
sce:YDL184C.

Organism-specific databases

SGDiS000002343. RPL41A.

Phylogenomic databases

KOiK02928.

Enzyme and pathway databases

BioCyciYEAST:G3O-29570-MONOMER.

Miscellaneous databases

PROiP0CX86.

Gene expression databases

ExpressionAtlasiP0CX86. differential.

Family and domain databases

InterProiIPR007836. Ribosomal_L41.
[Graphical view]
PfamiPF05162. Ribosomal_L41. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL41A_YEAST
AccessioniPrimary (citable) accession number: P0CX86
Secondary accession number(s): D6VRG8, P05746
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 28, 2011
Last sequence update: June 28, 2011
Last modified: September 7, 2016
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 11900 molecules/cell in log phase SD medium.1 Publication
There are 2 genes for L41 in yeast.

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families
  4. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  5. Yeast chromosome IV
    Yeast (Saccharomyces cerevisiae) chromosome IV: entries and gene names

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.