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Protein

Putative uncharacterized protein SPG20-AS1

Gene

SPG20-AS1

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Names & Taxonomyi

Protein namesi
Recommended name:
Putative uncharacterized protein SPG20-AS1Imported
Alternative name(s):
SPG20 antisense RNA 1Imported
SPG20 antisense gene protein 1
SPG20 opposite strand transcript proteinImported
Gene namesi
Name:SPG20-AS1Imported
Synonyms:C13orf43Imported, SPG20OSImported
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Unplaced

Organism-specific databases

HGNCiHGNC:39933. SPG20-AS1.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 5252Putative uncharacterized protein SPG20-AS1PRO_0000409554Add
BLAST

Expressioni

Gene expression databases

BgeeiP0CW21.

Structurei

3D structure databases

ProteinModelPortaliP0CW21.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

InParanoidiP0CW21.
OMAiNRSWNIC.
OrthoDBiEOG7J449T.
PhylomeDBiP0CW21.
TreeFamiTF340781.

Sequencei

Sequence statusi: Complete.

P0CW21-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKDIGHLQHL AQRLQWNRRA VNICGMHGWT KDLSPHSRMP SMLEHVKHYM

SC
Length:52
Mass (Da):6,167
Last modified:May 31, 2011 - v1
Checksum:i82D80B91765B2382
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL139377 Genomic DNA. No translation available.
UniGeneiHs.631781.

Genome annotation databases

EnsembliENST00000379848; ENSP00000369177; ENSG00000120664.
ENST00000488319; ENSP00000474217; ENSG00000120664.
ENST00000493739; ENSP00000475099; ENSG00000120664.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL139377 Genomic DNA. No translation available.
UniGeneiHs.631781.

3D structure databases

ProteinModelPortaliP0CW21.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000379848; ENSP00000369177; ENSG00000120664.
ENST00000488319; ENSP00000474217; ENSG00000120664.
ENST00000493739; ENSP00000475099; ENSG00000120664.

Organism-specific databases

GeneCardsiGC13P036922.
HGNCiHGNC:39933. SPG20-AS1.
neXtProtiNX_P0CW21.
GenAtlasiSearch...

Phylogenomic databases

InParanoidiP0CW21.
OMAiNRSWNIC.
OrthoDBiEOG7J449T.
PhylomeDBiP0CW21.
TreeFamiTF340781.

Miscellaneous databases

PROiP0CW21.

Gene expression databases

BgeeiP0CW21.

Family and domain databases

ProtoNetiSearch...

Publicationsi

  1. "The DNA sequence and analysis of human chromosome 13."
    Dunham A., Matthews L.H., Burton J., Ashurst J.L., Howe K.L., Ashcroft K.J., Beare D.M., Burford D.C., Hunt S.E., Griffiths-Jones S., Jones M.C., Keenan S.J., Oliver K., Scott C.E., Ainscough R., Almeida J.P., Ambrose K.D., Andrews D.T.
    , Ashwell R.I.S., Babbage A.K., Bagguley C.L., Bailey J., Bannerjee R., Barlow K.F., Bates K., Beasley H., Bird C.P., Bray-Allen S., Brown A.J., Brown J.Y., Burrill W., Carder C., Carter N.P., Chapman J.C., Clamp M.E., Clark S.Y., Clarke G., Clee C.M., Clegg S.C., Cobley V., Collins J.E., Corby N., Coville G.J., Deloukas P., Dhami P., Dunham I., Dunn M., Earthrowl M.E., Ellington A.G., Faulkner L., Frankish A.G., Frankland J., French L., Garner P., Garnett J., Gilbert J.G.R., Gilson C.J., Ghori J., Grafham D.V., Gribble S.M., Griffiths C., Hall R.E., Hammond S., Harley J.L., Hart E.A., Heath P.D., Howden P.J., Huckle E.J., Hunt P.J., Hunt A.R., Johnson C., Johnson D., Kay M., Kimberley A.M., King A., Laird G.K., Langford C.J., Lawlor S., Leongamornlert D.A., Lloyd D.M., Lloyd C., Loveland J.E., Lovell J., Martin S., Mashreghi-Mohammadi M., McLaren S.J., McMurray A., Milne S., Moore M.J.F., Nickerson T., Palmer S.A., Pearce A.V., Peck A.I., Pelan S., Phillimore B., Porter K.M., Rice C.M., Searle S., Sehra H.K., Shownkeen R., Skuce C.D., Smith M., Steward C.A., Sycamore N., Tester J., Thomas D.W., Tracey A., Tromans A., Tubby B., Wall M., Wallis J.M., West A.P., Whitehead S.L., Willey D.L., Wilming L., Wray P.W., Wright M.W., Young L., Coulson A., Durbin R.M., Hubbard T., Sulston J.E., Beck S., Bentley D.R., Rogers J., Ross M.T.
    Nature 428:522-528(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiSPGOS_HUMAN
AccessioniPrimary (citable) accession number: P0CW21
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 31, 2011
Last sequence update: May 31, 2011
Last modified: January 7, 2015
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Caution

Product of a dubious gene predicition.Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 13
    Human chromosome 13: entries, gene names and cross-references to MIM

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.