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P0CW20

- LIM3L_HUMAN

UniProt

P0CW20 - LIM3L_HUMAN

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Protein
LIM and senescent cell antigen-like-containing domain protein 3-like
Gene
LIMS3L
Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. zinc ion binding Source: InterPro
Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
LIM and senescent cell antigen-like-containing domain protein 3-like
Gene namesi
Name:LIMS3L
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 2

Organism-specific databases

HGNCiHGNC:39941. LIMS3L.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 117117LIM and senescent cell antigen-like-containing domain protein 3-like
PRO_0000409553Add
BLAST

Proteomic databases

PRIDEiP0CW20.

Expressioni

Gene expression databases

BgeeiP0CW20.

Interactioni

Protein-protein interaction databases

STRINGi9606.ENSP00000387795.

Structurei

3D structure databases

ProteinModelPortaliP0CW20.
SMRiP0CW20. Positions 68-114.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini70 – 11748LIM zinc-binding
Add
BLAST

Sequence similaritiesi

Keywords - Domaini

LIM domain

Phylogenomic databases

HOGENOMiHOG000070043.

Family and domain databases

Gene3Di2.10.110.10. 1 hit.
InterProiIPR017351. PINCH.
IPR001781. Znf_LIM.
[Graphical view]
PANTHERiPTHR24210. PTHR24210. 1 hit.
PfamiPF00412. LIM. 1 hit.
[Graphical view]
SMARTiSM00132. LIM. 1 hit.
[Graphical view]
PROSITEiPS00478. LIM_DOMAIN_1. 1 hit.
PS50023. LIM_DOMAIN_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0CW20-1 [UniParc]FASTAAdd to Basket

« Hide

MAFSGRARPC IIPENEEIPR AALNTVHEAN GTEDERAVSK LQRRHSDVKV    50
YKEFCDFYAK FNMANALASA TCERCKGGFA PAETIVNSNG ELYHEQCFVC 100
AQCFQQFPEG LFYEERT 117
Length:117
Mass (Da):13,251
Last modified:May 31, 2011 - v1
Checksum:iF260926C06DA51CE
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC108938 Genomic DNA. Translation: AAY24131.1.
AC112229 Genomic DNA. No translation available.
CCDSiCCDS54387.1.
RefSeqiNP_001192217.1. NM_001205288.1.
NP_277049.1. NM_033514.4.
UniGeneiHs.535619.
Hs.735995.

Genome annotation databases

EnsembliENST00000413601; ENSP00000404432; ENSG00000256671.
GeneIDi100288695.
96626.
KEGGihsa:100288695.
hsa:96626.
UCSCiuc002tff.3. human.

Polymorphism databases

DMDMi334350996.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC108938 Genomic DNA. Translation: AAY24131.1 .
AC112229 Genomic DNA. No translation available.
CCDSi CCDS54387.1.
RefSeqi NP_001192217.1. NM_001205288.1.
NP_277049.1. NM_033514.4.
UniGenei Hs.535619.
Hs.735995.

3D structure databases

ProteinModelPortali P0CW20.
SMRi P0CW20. Positions 68-114.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 9606.ENSP00000387795.

Polymorphism databases

DMDMi 334350996.

Proteomic databases

PRIDEi P0CW20.

Protocols and materials databases

DNASUi 96626.
Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000413601 ; ENSP00000404432 ; ENSG00000256671 .
GeneIDi 100288695.
96626.
KEGGi hsa:100288695.
hsa:96626.
UCSCi uc002tff.3. human.

Organism-specific databases

CTDi 100288695.
96626.
GeneCardsi GC02M111204.
HGNCi HGNC:39941. LIMS3L.
neXtProti NX_P0CW20.
GenAtlasi Search...

Phylogenomic databases

HOGENOMi HOG000070043.

Miscellaneous databases

NextBioi 20778441.

Gene expression databases

Bgeei P0CW20.

Family and domain databases

Gene3Di 2.10.110.10. 1 hit.
InterProi IPR017351. PINCH.
IPR001781. Znf_LIM.
[Graphical view ]
PANTHERi PTHR24210. PTHR24210. 1 hit.
Pfami PF00412. LIM. 1 hit.
[Graphical view ]
SMARTi SM00132. LIM. 1 hit.
[Graphical view ]
PROSITEi PS00478. LIM_DOMAIN_1. 1 hit.
PS50023. LIM_DOMAIN_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Generation and annotation of the DNA sequences of human chromosomes 2 and 4."
    Hillier L.W., Graves T.A., Fulton R.S., Fulton L.A., Pepin K.H., Minx P., Wagner-McPherson C., Layman D., Wylie K., Sekhon M., Becker M.C., Fewell G.A., Delehaunty K.D., Miner T.L., Nash W.E., Kremitzki C., Oddy L., Du H.
    , Sun H., Bradshaw-Cordum H., Ali J., Carter J., Cordes M., Harris A., Isak A., van Brunt A., Nguyen C., Du F., Courtney L., Kalicki J., Ozersky P., Abbott S., Armstrong J., Belter E.A., Caruso L., Cedroni M., Cotton M., Davidson T., Desai A., Elliott G., Erb T., Fronick C., Gaige T., Haakenson W., Haglund K., Holmes A., Harkins R., Kim K., Kruchowski S.S., Strong C.M., Grewal N., Goyea E., Hou S., Levy A., Martinka S., Mead K., McLellan M.D., Meyer R., Randall-Maher J., Tomlinson C., Dauphin-Kohlberg S., Kozlowicz-Reilly A., Shah N., Swearengen-Shahid S., Snider J., Strong J.T., Thompson J., Yoakum M., Leonard S., Pearman C., Trani L., Radionenko M., Waligorski J.E., Wang C., Rock S.M., Tin-Wollam A.-M., Maupin R., Latreille P., Wendl M.C., Yang S.-P., Pohl C., Wallis J.W., Spieth J., Bieri T.A., Berkowicz N., Nelson J.O., Osborne J., Ding L., Meyer R., Sabo A., Shotland Y., Sinha P., Wohldmann P.E., Cook L.L., Hickenbotham M.T., Eldred J., Williams D., Jones T.A., She X., Ciccarelli F.D., Izaurralde E., Taylor J., Schmutz J., Myers R.M., Cox D.R., Huang X., McPherson J.D., Mardis E.R., Clifton S.W., Warren W.C., Chinwalla A.T., Eddy S.R., Marra M.A., Ovcharenko I., Furey T.S., Miller W., Eichler E.E., Bork P., Suyama M., Torrents D., Waterston R.H., Wilson R.K.
    Nature 434:724-731(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiLIM3L_HUMAN
AccessioniPrimary (citable) accession number: P0CW20
Secondary accession number(s): C9K0W2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 31, 2011
Last sequence update: May 31, 2011
Last modified: July 9, 2014
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 2
    Human chromosome 2: entries, gene names and cross-references to MIM
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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