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P0CW20

- LIM3L_HUMAN

UniProt

P0CW20 - LIM3L_HUMAN

Protein

LIM and senescent cell antigen-like-containing domain protein 3-like

Gene

LIMS3L

Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 1 out of 5- Protein inferred from homologyi
  1. Functioni

    GO - Molecular functioni

    1. zinc ion binding Source: InterPro

    Keywords - Ligandi

    Metal-binding, Zinc

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    LIM and senescent cell antigen-like-containing domain protein 3-like
    Gene namesi
    Name:LIMS3L
    OrganismiHomo sapiens (Human)
    Taxonomic identifieri9606 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
    ProteomesiUP000005640: Chromosome 2

    Organism-specific databases

    HGNCiHGNC:39941. LIMS3L.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 117117LIM and senescent cell antigen-like-containing domain protein 3-likePRO_0000409553Add
    BLAST

    Proteomic databases

    PRIDEiP0CW20.

    Expressioni

    Gene expression databases

    BgeeiP0CW20.

    Interactioni

    Protein-protein interaction databases

    STRINGi9606.ENSP00000387795.

    Structurei

    3D structure databases

    ProteinModelPortaliP0CW20.
    SMRiP0CW20. Positions 68-114.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini70 – 11748LIM zinc-bindingPROSITE-ProRule annotationAdd
    BLAST

    Sequence similaritiesi

    Contains 1 LIM zinc-binding domain.PROSITE-ProRule annotation

    Keywords - Domaini

    LIM domain

    Phylogenomic databases

    HOGENOMiHOG000070043.

    Family and domain databases

    Gene3Di2.10.110.10. 1 hit.
    InterProiIPR017351. PINCH.
    IPR001781. Znf_LIM.
    [Graphical view]
    PANTHERiPTHR24210. PTHR24210. 1 hit.
    PfamiPF00412. LIM. 1 hit.
    [Graphical view]
    SMARTiSM00132. LIM. 1 hit.
    [Graphical view]
    PROSITEiPS00478. LIM_DOMAIN_1. 1 hit.
    PS50023. LIM_DOMAIN_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P0CW20-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAFSGRARPC IIPENEEIPR AALNTVHEAN GTEDERAVSK LQRRHSDVKV    50
    YKEFCDFYAK FNMANALASA TCERCKGGFA PAETIVNSNG ELYHEQCFVC 100
    AQCFQQFPEG LFYEERT 117
    Length:117
    Mass (Da):13,251
    Last modified:May 31, 2011 - v1
    Checksum:iF260926C06DA51CE
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC108938 Genomic DNA. Translation: AAY24131.1.
    AC112229 Genomic DNA. No translation available.
    CCDSiCCDS54387.1.
    RefSeqiNP_001192217.1. NM_001205288.1.
    NP_277049.1. NM_033514.4.
    UniGeneiHs.535619.
    Hs.735995.

    Genome annotation databases

    EnsembliENST00000413601; ENSP00000404432; ENSG00000256671.
    GeneIDi100288695.
    96626.
    KEGGihsa:100288695.
    hsa:96626.
    UCSCiuc002tff.3. human.

    Polymorphism databases

    DMDMi334350996.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC108938 Genomic DNA. Translation: AAY24131.1 .
    AC112229 Genomic DNA. No translation available.
    CCDSi CCDS54387.1.
    RefSeqi NP_001192217.1. NM_001205288.1.
    NP_277049.1. NM_033514.4.
    UniGenei Hs.535619.
    Hs.735995.

    3D structure databases

    ProteinModelPortali P0CW20.
    SMRi P0CW20. Positions 68-114.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 9606.ENSP00000387795.

    Polymorphism databases

    DMDMi 334350996.

    Proteomic databases

    PRIDEi P0CW20.

    Protocols and materials databases

    DNASUi 96626.
    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENST00000413601 ; ENSP00000404432 ; ENSG00000256671 .
    GeneIDi 100288695.
    96626.
    KEGGi hsa:100288695.
    hsa:96626.
    UCSCi uc002tff.3. human.

    Organism-specific databases

    CTDi 100288695.
    96626.
    GeneCardsi GC02M111204.
    HGNCi HGNC:39941. LIMS3L.
    neXtProti NX_P0CW20.
    GenAtlasi Search...

    Phylogenomic databases

    HOGENOMi HOG000070043.

    Miscellaneous databases

    NextBioi 20778441.

    Gene expression databases

    Bgeei P0CW20.

    Family and domain databases

    Gene3Di 2.10.110.10. 1 hit.
    InterProi IPR017351. PINCH.
    IPR001781. Znf_LIM.
    [Graphical view ]
    PANTHERi PTHR24210. PTHR24210. 1 hit.
    Pfami PF00412. LIM. 1 hit.
    [Graphical view ]
    SMARTi SM00132. LIM. 1 hit.
    [Graphical view ]
    PROSITEi PS00478. LIM_DOMAIN_1. 1 hit.
    PS50023. LIM_DOMAIN_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Generation and annotation of the DNA sequences of human chromosomes 2 and 4."
      Hillier L.W., Graves T.A., Fulton R.S., Fulton L.A., Pepin K.H., Minx P., Wagner-McPherson C., Layman D., Wylie K., Sekhon M., Becker M.C., Fewell G.A., Delehaunty K.D., Miner T.L., Nash W.E., Kremitzki C., Oddy L., Du H.
      , Sun H., Bradshaw-Cordum H., Ali J., Carter J., Cordes M., Harris A., Isak A., van Brunt A., Nguyen C., Du F., Courtney L., Kalicki J., Ozersky P., Abbott S., Armstrong J., Belter E.A., Caruso L., Cedroni M., Cotton M., Davidson T., Desai A., Elliott G., Erb T., Fronick C., Gaige T., Haakenson W., Haglund K., Holmes A., Harkins R., Kim K., Kruchowski S.S., Strong C.M., Grewal N., Goyea E., Hou S., Levy A., Martinka S., Mead K., McLellan M.D., Meyer R., Randall-Maher J., Tomlinson C., Dauphin-Kohlberg S., Kozlowicz-Reilly A., Shah N., Swearengen-Shahid S., Snider J., Strong J.T., Thompson J., Yoakum M., Leonard S., Pearman C., Trani L., Radionenko M., Waligorski J.E., Wang C., Rock S.M., Tin-Wollam A.-M., Maupin R., Latreille P., Wendl M.C., Yang S.-P., Pohl C., Wallis J.W., Spieth J., Bieri T.A., Berkowicz N., Nelson J.O., Osborne J., Ding L., Meyer R., Sabo A., Shotland Y., Sinha P., Wohldmann P.E., Cook L.L., Hickenbotham M.T., Eldred J., Williams D., Jones T.A., She X., Ciccarelli F.D., Izaurralde E., Taylor J., Schmutz J., Myers R.M., Cox D.R., Huang X., McPherson J.D., Mardis E.R., Clifton S.W., Warren W.C., Chinwalla A.T., Eddy S.R., Marra M.A., Ovcharenko I., Furey T.S., Miller W., Eichler E.E., Bork P., Suyama M., Torrents D., Waterston R.H., Wilson R.K.
      Nature 434:724-731(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

    Entry informationi

    Entry nameiLIM3L_HUMAN
    AccessioniPrimary (citable) accession number: P0CW20
    Secondary accession number(s): C9K0W2
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 31, 2011
    Last sequence update: May 31, 2011
    Last modified: October 1, 2014
    This is version 31 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program
    DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Human chromosome 2
      Human chromosome 2: entries, gene names and cross-references to MIM
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3