SubmitCancel

Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

P0CL85

- ST3L3_HUMAN

UniProt

P0CL85 - ST3L3_HUMAN

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein

STAG3-like protein 3

Gene
STAG3L3
Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
STAG3-like protein 3
Alternative name(s):
Stromal antigen 3-like protein 3
Gene namesi
Name:STAG3L3
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 7

Organism-specific databases

HGNCiHGNC:33845. STAG3L3.

Subcellular locationi

Nucleus By similarity

GO - Cellular componenti

  1. nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 134134STAG3-like protein 3PRO_0000408000Add
BLAST

Proteomic databases

PRIDEiP0CL85.

Expressioni

Gene expression databases

BgeeiP0CL85.

Structurei

3D structure databases

ProteinModelPortaliP0CL85.
SMRiP0CL85. Positions 5-119.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini10 – 9586SCDAdd
BLAST

Sequence similaritiesi

Belongs to the SCC3 family.

Family and domain databases

InterProiIPR016024. ARM-type_fold.
IPR020839. SCD.
[Graphical view]
SUPFAMiSSF48371. SSF48371. 1 hit.
PROSITEiPS51425. SCD. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. Align

Isoform 1 (identifier: P0CL85-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

MIFSMLRKLP KVTCRDVLPE IRAICIEEIG CWMQSYSTSF LTDSYLKYIG    50
WTLHDKHREV RVKCVKALKG LYGNRDLTAR LELFTGCFKD WMVSMIMDRE 100
YSVAVEAVRL LILILKNMEG VLMDVDCESV YPIV 134
Length:134
Mass (Da):15,609
Last modified:May 3, 2011 - v1
Checksum:i6A7148BD316B9B72
GO
Isoform 2 (identifier: P0CL85-2) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     117-134: Missing.

Show »
Length:116
Mass (Da):13,613
Checksum:i67C4FCA7022053AE
GO

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei117 – 13418Missing in isoform 2. VSP_041016Add
BLAST

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti87 – 871C → R in AAP81010. 1 Publication
Sequence conflicti87 – 871C → R in AAH66937. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AY313779 mRNA. Translation: AAP81010.1.
AC005488 Genomic DNA. No translation available.
BC066937 mRNA. Translation: AAH66937.1.
UniGeneiHs.632310.
Hs.661254.

Genome annotation databases

EnsembliENST00000423834; ENSP00000396814; ENSG00000174353.
ENST00000448173; ENSP00000401427; ENSG00000174353.
ENST00000576379; ENSP00000461701; ENSG00000263067.
ENST00000576727; ENSP00000459491; ENSG00000263067.

Polymorphism databases

DMDMi332321727.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AY313779 mRNA. Translation: AAP81010.1 .
AC005488 Genomic DNA. No translation available.
BC066937 mRNA. Translation: AAH66937.1 .
UniGenei Hs.632310.
Hs.661254.

3D structure databases

ProteinModelPortali P0CL85.
SMRi P0CL85. Positions 5-119.
ModBasei Search...
MobiDBi Search...

Polymorphism databases

DMDMi 332321727.

Proteomic databases

PRIDEi P0CL85.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000423834 ; ENSP00000396814 ; ENSG00000174353 .
ENST00000448173 ; ENSP00000401427 ; ENSG00000174353 .
ENST00000576379 ; ENSP00000461701 ; ENSG00000263067 .
ENST00000576727 ; ENSP00000459491 ; ENSG00000263067 .

Organism-specific databases

GeneCardsi GC07M072440.
HGNCi HGNC:33845. STAG3L3.
neXtProti NX_P0CL85.
GenAtlasi Search...

Miscellaneous databases

ChiTaRSi STAG3L3. human.
PROi P0CL85.

Gene expression databases

Bgeei P0CL85.

Family and domain databases

InterProi IPR016024. ARM-type_fold.
IPR020839. SCD.
[Graphical view ]
SUPFAMi SSF48371. SSF48371. 1 hit.
PROSITEi PS51425. SCD. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "An ARM-repeat superfamily protein acts in spermatogenesis."
    Xu Z.Y., Xu M., Yin L.L., Lu L., Li J.M., Zhou J.M., Sha J.H.
    Submitted (JUN-2003) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2).
    Tissue: Testis.
  2. "The DNA sequence of human chromosome 7."
    Hillier L.W., Fulton R.S., Fulton L.A., Graves T.A., Pepin K.H., Wagner-McPherson C., Layman D., Maas J., Jaeger S., Walker R., Wylie K., Sekhon M., Becker M.C., O'Laughlin M.D., Schaller M.E., Fewell G.A., Delehaunty K.D., Miner T.L.
    , Nash W.E., Cordes M., Du H., Sun H., Edwards J., Bradshaw-Cordum H., Ali J., Andrews S., Isak A., Vanbrunt A., Nguyen C., Du F., Lamar B., Courtney L., Kalicki J., Ozersky P., Bielicki L., Scott K., Holmes A., Harkins R., Harris A., Strong C.M., Hou S., Tomlinson C., Dauphin-Kohlberg S., Kozlowicz-Reilly A., Leonard S., Rohlfing T., Rock S.M., Tin-Wollam A.-M., Abbott A., Minx P., Maupin R., Strowmatt C., Latreille P., Miller N., Johnson D., Murray J., Woessner J.P., Wendl M.C., Yang S.-P., Schultz B.R., Wallis J.W., Spieth J., Bieri T.A., Nelson J.O., Berkowicz N., Wohldmann P.E., Cook L.L., Hickenbotham M.T., Eldred J., Williams D., Bedell J.A., Mardis E.R., Clifton S.W., Chissoe S.L., Marra M.A., Raymond C., Haugen E., Gillett W., Zhou Y., James R., Phelps K., Iadanoto S., Bubb K., Simms E., Levy R., Clendenning J., Kaul R., Kent W.J., Furey T.S., Baertsch R.A., Brent M.R., Keibler E., Flicek P., Bork P., Suyama M., Bailey J.A., Portnoy M.E., Torrents D., Chinwalla A.T., Gish W.R., Eddy S.R., McPherson J.D., Olson M.V., Eichler E.E., Green E.D., Waterston R.H., Wilson R.K.
    Nature 424:157-164(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
    Tissue: Brain, Mammary gland and Testis.

Entry informationi

Entry nameiST3L3_HUMAN
AccessioniPrimary (citable) accession number: P0CL85
Secondary accession number(s): A6NMT8
, A8K0A1, Q32NE4, Q6NXR2, Q7L5M5, Q7Z5K6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 3, 2011
Last sequence update: May 3, 2011
Last modified: April 16, 2014
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 7
    Human chromosome 7: entries, gene names and cross-references to MIM
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi