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P0CL77

- DPOL_PYRAB

UniProt

P0CL77 - DPOL_PYRAB

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Protein
DNA polymerase 1
Gene
polI, pol, PYRAB17200, PAB1128
Organism
Pyrococcus abyssi (strain GE5 / Orsay)
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

Catalytic activityi

Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1).

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. DNA-directed DNA polymerase activity Source: UniProtKB-KW
  3. nucleotide binding Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

DNA-directed DNA polymerase, Nucleotidyltransferase, Transferase

Keywords - Biological processi

DNA replication

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA polymerase 1 (EC:2.7.7.7)
Alternative name(s):
Pab polymerase
Gene namesi
Name:polI
Synonyms:pol
Ordered Locus Names:PYRAB17200
ORF Names:PAB1128
OrganismiPyrococcus abyssi (strain GE5 / Orsay)
Taxonomic identifieri272844 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaePyrococcus
ProteomesiUP000000810: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 771771DNA polymerase 1
PRO_0000407283Add
BLAST

Proteomic databases

PRIDEiP0CL77.

Structurei

Secondary structure

Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi1 – 1010
Beta strandi13 – 2210
Beta strandi25 – 328
Beta strandi37 – 448
Helixi45 – 473
Helixi48 – 514
Beta strandi55 – 584
Beta strandi61 – 644
Beta strandi67 – 759
Beta strandi78 – 869
Helixi92 – 10110
Beta strandi106 – 1116
Helixi116 – 1238
Beta strandi137 – 1448
Beta strandi157 – 1648
Beta strandi167 – 1748
Beta strandi181 – 1833
Helixi187 – 20115
Beta strandi204 – 2107
Turni211 – 2144
Helixi215 – 22511
Beta strandi240 – 2445
Beta strandi247 – 2515
Beta strandi255 – 2595
Helixi260 – 2678
Helixi275 – 2839
Helixi292 – 30110
Helixi305 – 33733
Helixi341 – 3455
Helixi349 – 36416
Helixi374 – 3818
Beta strandi398 – 4058
Helixi407 – 4093
Helixi410 – 4167
Turni421 – 4233
Beta strandi430 – 4345
Turni436 – 4383
Beta strandi441 – 4433
Helixi449 – 46921
Helixi474 – 49118
Helixi494 – 4985
Helixi508 – 53124
Beta strandi535 – 5395
Beta strandi541 – 5477
Helixi553 – 57018
Beta strandi578 – 59013
Beta strandi593 – 5975
Beta strandi603 – 6075
Helixi617 – 63115
Helixi636 – 65116
Helixi657 – 6604
Beta strandi662 – 6654
Helixi670 – 6723
Helixi678 – 68811
Beta strandi698 – 7058
Helixi710 – 7123
Beta strandi714 – 7163
Helixi717 – 7193
Turni722 – 7243
Helixi729 – 7346
Helixi737 – 74610
Turni747 – 7493
Helixi752 – 7543

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4FLTX-ray2.90A1-771[»]
4FLVX-ray2.70A1-771[»]
4FLWX-ray2.15A1-771[»]
4FLXX-ray2.90A1-771[»]
4FLYX-ray2.30A1-771[»]
4FLZX-ray3.20A1-771[»]
4FM0X-ray3.12A1-771[»]
4FM1X-ray3.00A1-771[»]
4FM2X-ray2.90A1-771[»]
ProteinModelPortaliP0CL77.
SMRiP0CL77. Positions 1-770.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

HOGENOMiHOG000222650.
KOiK02319.
OMAiIADEFNQ.

Family and domain databases

Gene3Di3.30.420.10. 1 hit.
3.90.1600.10. 2 hits.
InterProiIPR006172. DNA-dir_DNA_pol_B.
IPR017964. DNA-dir_DNA_pol_B_CS.
IPR006133. DNA-dir_DNA_pol_B_exonuc.
IPR006134. DNA-dir_DNA_pol_B_multi_dom.
IPR023211. DNA_pol_palm_dom.
IPR012337. RNaseH-like_dom.
[Graphical view]
PfamiPF00136. DNA_pol_B. 1 hit.
PF03104. DNA_pol_B_exo1. 2 hits.
[Graphical view]
PRINTSiPR00106. DNAPOLB.
SMARTiSM00486. POLBc. 1 hit.
[Graphical view]
SUPFAMiSSF53098. SSF53098. 1 hit.
PROSITEiPS00116. DNA_POLYMERASE_B. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0CL77-1 [UniParc]FASTAAdd to Basket

« Hide

MIIDADYITE DGKPIIRIFK KEKGEFKVEY DRTFRPYIYA LLKDDSAIDE    50
VKKITAERHG KIVRITEVEK VQKKFLGRPI EVWKLYLEHP QDVPAIREKI 100
REHPAVVDIF EYDIPFAKRY LIDKGLTPME GNEELTFLAV DIETLYHEGE 150
EFGKGPIIMI SYADEEGAKV ITWKSIDLPY VEVVSSEREM IKRLVKVIRE 200
KDPDVIITYN GDNFDFPYLL KRAEKLGIKL PLGRDNSEPK MQRMGDSLAV 250
EIKGRIHFDL FPVIRRTINL PTYTLEAVYE AIFGKSKEKV YAHEIAEAWE 300
TGKGLERVAK YSMEDAKVTF ELGKEFFPME AQLARLVGQP VWDVSRSSTG 350
NLVEWFLLRK AYERNELAPN KPDEREYERR LRESYEGGYV KEPEKGLWEG 400
IVSLDFRSLY PSIIITHNVS PDTLNRENCK EYDVAPQVGH RFCKDFPGFI 450
PSLLGNLLEE RQKIKKRMKE SKDPVEKKLL DYRQRAIKIL ANSYYGYYGY 500
AKARWYCKEC AESVTAWGRQ YIDLVRRELE SRGFKVLYID TDGLYATIPG 550
AKHEEIKEKA LKFVEYINSK LPGLLELEYE GFYARGFFVT KKKYALIDEE 600
GKIVTRGLEI VRRDWSEIAK ETQAKVLEAI LKHGNVDEAV KIVKEVTEKL 650
SKYEIPPEKL VIYEQITRPL SEYKAIGPHV AVAKRLAAKG VKVKPGMVIG 700
YIVLRGDGPI SKRAIAIEEF DPKKHKYDAE YYIENQVLPA VERILRAFGY 750
RKEDLKYQKT KQVGLGAWLK F 771
Length:771
Mass (Da):89,496
Last modified:April 5, 2011 - v1
Checksum:i110A87045A8A5522
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AJ248288 Genomic DNA. Translation: CAB50625.1.
HE613800 Genomic DNA. Translation: CCE71192.1.
PIRiC75023.
RefSeqiNP_127396.1. NC_000868.1.

Genome annotation databases

EnsemblBacteriaiCAB50625; CAB50625; PAB1128.
GeneIDi1496021.
KEGGipab:PAB1128.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AJ248288 Genomic DNA. Translation: CAB50625.1 .
HE613800 Genomic DNA. Translation: CCE71192.1 .
PIRi C75023.
RefSeqi NP_127396.1. NC_000868.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
4FLT X-ray 2.90 A 1-771 [» ]
4FLV X-ray 2.70 A 1-771 [» ]
4FLW X-ray 2.15 A 1-771 [» ]
4FLX X-ray 2.90 A 1-771 [» ]
4FLY X-ray 2.30 A 1-771 [» ]
4FLZ X-ray 3.20 A 1-771 [» ]
4FM0 X-ray 3.12 A 1-771 [» ]
4FM1 X-ray 3.00 A 1-771 [» ]
4FM2 X-ray 2.90 A 1-771 [» ]
ProteinModelPortali P0CL77.
SMRi P0CL77. Positions 1-770.
ModBasei Search...
MobiDBi Search...

Proteomic databases

PRIDEi P0CL77.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAB50625 ; CAB50625 ; PAB1128 .
GeneIDi 1496021.
KEGGi pab:PAB1128.

Phylogenomic databases

HOGENOMi HOG000222650.
KOi K02319.
OMAi IADEFNQ.

Family and domain databases

Gene3Di 3.30.420.10. 1 hit.
3.90.1600.10. 2 hits.
InterProi IPR006172. DNA-dir_DNA_pol_B.
IPR017964. DNA-dir_DNA_pol_B_CS.
IPR006133. DNA-dir_DNA_pol_B_exonuc.
IPR006134. DNA-dir_DNA_pol_B_multi_dom.
IPR023211. DNA_pol_palm_dom.
IPR012337. RNaseH-like_dom.
[Graphical view ]
Pfami PF00136. DNA_pol_B. 1 hit.
PF03104. DNA_pol_B_exo1. 2 hits.
[Graphical view ]
PRINTSi PR00106. DNAPOLB.
SMARTi SM00486. POLBc. 1 hit.
[Graphical view ]
SUPFAMi SSF53098. SSF53098. 1 hit.
PROSITEi PS00116. DNA_POLYMERASE_B. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: GE5 / Orsay.
  2. "Re-annotation of two hyperthermophilic archaea Pyrococcus abyssi GE5 and Pyrococcus furiosus DSM 3638."
    Gao J., Wang J.
    Curr. Microbiol. 64:118-129(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: GE5 / Orsay.

Entry informationi

Entry nameiDPOL_PYRAB
AccessioniPrimary (citable) accession number: P0CL77
Secondary accession number(s): G8ZK85, P77916, P77932
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 5, 2011
Last sequence update: April 5, 2011
Last modified: September 3, 2014
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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