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Protein

Decorin-binding protein B

Gene

dbpB

Organism
Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Binds to decorin which may mediate the adherence of B.burgdorferi to collagen fibers in skin and other tissues.By similarity

Names & Taxonomyi

Protein namesi
Recommended name:
Decorin-binding protein B
Gene namesi
Name:dbpB
Ordered Locus Names:BB_A25
Encoded oniPlasmid lp540 Publication
OrganismiBorrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680)
Taxonomic identifieri224326 [NCBI]
Taxonomic lineageiBacteriaSpirochaetesSpirochaetalesBorreliaceaeBorreliella
Proteomesi
  • UP000001807 Componenti: Plasmid lp54

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 20Sequence analysisAdd BLAST20
ChainiPRO_000002107521 – 187Decorin-binding protein BAdd BLAST167

Proteomic databases

PRIDEiP0CL68.

Structurei

Secondary structure

1187
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Turni27 – 31Combined sources5
Helixi34 – 53Combined sources20
Turni70 – 74Combined sources5
Helixi75 – 102Combined sources28
Turni103 – 105Combined sources3
Helixi108 – 120Combined sources13
Turni121 – 123Combined sources3
Helixi124 – 128Combined sources5
Helixi134 – 143Combined sources10
Helixi150 – 167Combined sources18
Helixi168 – 171Combined sources4
Beta strandi174 – 178Combined sources5

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2MVGNMR-A22-187[»]
SMRiP0CL68.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the decorin-binding protein family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

OMAiISEEAKC.

Family and domain databases

InterProiIPR003332. Decorin-bd.
[Graphical view]
PfamiPF02352. Decorin_bind. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P0CL68-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKIGKLNSIV IALFFKLLVA CSIGLVERTN AALESSSKDL KNKILKIKKE
60 70 80 90 100
ATGKGVLFEA FTGLKTGSKV TSGGLALREA KVQAIVETGK FLKIIEEEAL
110 120 130 140 150
KLKETGNSGQ FLAMFDLMLE VVESLEDVGI IGLKARVLEE SKNNPINTAE
160 170 180
RLLAAKAQIE NQLKVVKEKQ NIENGGEKKN NKSKKKK
Length:187
Mass (Da):20,398
Last modified:April 5, 2011 - v1
Checksum:i7AC8CCF8C690E526
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000790 Genomic DNA. Translation: AAC66244.1.
PIRiA70210.
RefSeqiNP_045698.1. NC_001857.2.
WP_010890381.1. NC_001857.2.

Genome annotation databases

EnsemblBacteriaiAAC66244; AAC66244; BB_A25.
GeneIDi1194341.
KEGGibbu:BB_A25.
PATRICi20558974. VBIBorBur75917_1542.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000790 Genomic DNA. Translation: AAC66244.1.
PIRiA70210.
RefSeqiNP_045698.1. NC_001857.2.
WP_010890381.1. NC_001857.2.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2MVGNMR-A22-187[»]
SMRiP0CL68.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiP0CL68.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC66244; AAC66244; BB_A25.
GeneIDi1194341.
KEGGibbu:BB_A25.
PATRICi20558974. VBIBorBur75917_1542.

Phylogenomic databases

OMAiISEEAKC.

Family and domain databases

InterProiIPR003332. Decorin-bd.
[Graphical view]
PfamiPF02352. Decorin_bind. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiDBPB_BORBU
AccessioniPrimary (citable) accession number: P0CL68
Secondary accession number(s): O50918, O52611
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 5, 2011
Last sequence update: April 5, 2011
Last modified: November 2, 2016
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Plasmid, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.