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Protein

Uncharacterized protein YmiA

Gene

ymiA

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YmiA
Gene namesi
Name:ymiA
Ordered Locus Names:b4522, JW1267.1
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14463. ymiA.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei30 – 5021HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 5454Uncharacterized protein YmiAPRO_0000388331Add
BLAST

Proteomic databases

PaxDbiP0CB62.

Expressioni

Inductioni

Constitutively expressed (at protein level).1 Publication

Interactioni

Protein-protein interaction databases

IntActiP0CB62. 3 interactions.
STRINGi511145.b4522.

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

HOGENOMiHOG000267928.
OrthoDBiEOG676Z93.

Sequencei

Sequence statusi: Complete.

P0CB62-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLISDGDYMR LAMPSGNQEP RRDPELKRKA WLAVFLGSAL FWVVVALLIW

KVWG
Length:54
Mass (Da):6,232
Last modified:March 19, 2014 - v2
Checksum:i40A969682811711D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: ABD18655.2.
AP009048 Genomic DNA. No translation available.
RefSeqiYP_588449.2. NC_000913.3.

Genome annotation databases

EnsemblBacteriaiABD18655; ABD18655; b4522.
GeneIDi1450256.
KEGGieco:b4522.
PATRICi32117810. VBIEscCol129921_1325.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: ABD18655.2.
AP009048 Genomic DNA. No translation available.
RefSeqiYP_588449.2. NC_000913.3.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiP0CB62. 3 interactions.
STRINGi511145.b4522.

Proteomic databases

PaxDbiP0CB62.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABD18655; ABD18655; b4522.
GeneIDi1450256.
KEGGieco:b4522.
PATRICi32117810. VBIEscCol129921_1325.

Organism-specific databases

EcoGeneiEG14463. ymiA.

Phylogenomic databases

HOGENOMiHOG000267928.
OrthoDBiEOG676Z93.

Miscellaneous databases

PROiP0CB62.

Family and domain databases

ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. "Deep coverage of the Escherichia coli proteome enables the assessment of false discovery rates in simple proteogenomic experiments."
    Krug K., Carpy A., Behrends G., Matic K., Soares N.C., Macek B.
    Mol. Cell. Proteomics 12:3420-3430(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 11-21.
    Strain: K12 / BW25113.
  4. "Small membrane proteins found by comparative genomics and ribosome binding site models."
    Hemm M.R., Paul B.J., Schneider T.D., Storz G., Rudd K.E.
    Mol. Microbiol. 70:1487-1501(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: SUBCELLULAR LOCATION, INDUCTION.
    Strain: K12 / MG1655 / ATCC 47076.

Entry informationi

Entry nameiYMIA_ECOLI
AccessioniPrimary (citable) accession number: P0CB62
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 3, 2009
Last sequence update: March 19, 2014
Last modified: November 11, 2015
This is version 29 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.