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P0CB62 (YMIA_ECOLI) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 11. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Uncharacterized protein ymiA
Gene names
Name:ymiA
Ordered Locus Names:b4522, JW1267.1
OrganismEscherichia coli (strain K12)
Taxonomic identifier83333 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia

Protein attributes

Sequence length42 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Subcellular location

Membrane; Single-pass membrane protein Potential Ref.3.

Induction

Constitutively expressed (at protein level). Ref.3

Ontologies

Keywords
   Cellular componentMembrane
   DomainTransmembrane
Transmembrane helix
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Cellular componentintegral to membrane

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 4242Uncharacterized protein ymiA
PRO_0000388331

Regions

Transmembrane18 – 3821Helical; Potential

Sequences

Sequence LengthMass (Da)Tools
P0CB62 [UniParc].

Last modified November 3, 2009. Version 1.
Checksum: 072678B23616655C

FASTA424,866
        10         20         30         40 
MPSGNQEPRR DPELKRKAWL AVFLGSALFW VVVALLIWKV WG 

« Hide

References

« Hide 'large scale' references
[1]"The complete genome sequence of Escherichia coli K-12."
Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y.
Science 277:1453-1474(1997) [PubMed: 9278503] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / MG1655 / ATCC 47076.
[2]"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
Mol. Syst. Biol. 2:E1-E5(2006) [PubMed: 16738553] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
[3]"Small membrane proteins found by comparative genomics and ribosome binding site models."
Hemm M.R., Paul B.J., Schneider T.D., Storz G., Rudd K.E.
Mol. Microbiol. 70:1487-1501(2008) [PubMed: 19121005] [Abstract]
Cited for: SUBCELLULAR LOCATION, INDUCTION.
Strain: K12 / MG1655 / ATCC 47076.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U00096 Genomic DNA. Translation: ABD18655.1.
AP009048 Genomic DNA. No translation available.
RefSeqYP_588449.1. NC_000913.2.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaEBESCT00000005200; EBESCP00000141854; EBESCG00000004265.
EBESCT00000151757; EBESCP00000141884; EBESCG00000150808.
GeneID1450256.
GenomeReviewsGene locus b4522 in contig AP009048_GR.
Gene locus b4522 in contig U00096_GR.
KEGGeco:b4522.
PATRIC32117810. VBIEscCol129921_1325.

Organism-specific databases

EcoGeneEG14463. ymiA.

Phylogenomic databases

GeneTreeEBGT00050000010998.
ProtClustDBCLSK880130.

Family and domain databases

ProtoNetSearch...

Entry information

Entry nameYMIA_ECOLI
AccessionPrimary (citable) accession number: P0CB62
Entry history
Integrated into UniProtKB/Swiss-Prot: November 3, 2009
Last sequence update: November 3, 2009
Last modified: January 25, 2012
This is version 11 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Escherichia coli

Escherichia coli (strain K12): entries and cross-references to EcoGene