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Protein

Solute carrier family 25 member 38-B

Gene

slc25a38b

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Mitochondrial carrier required during erythropoiesis. Probably involved in the biosynthesis of heme, possibly by facilitating 5-aminolevulinate (ALA) production. May act by importing glycine into mitochondria or by exchanging glycine for ALA across the mitochondrial inner membrane.UniRule annotation

GO - Biological processi

  1. erythrocyte differentiation Source: UniProtKB
  2. transmembrane transport Source: InterPro
Complete GO annotation...

Keywords - Biological processi

Transport

Names & Taxonomyi

Protein namesi
Recommended name:
Solute carrier family 25 member 38-BUniRule annotation
Gene namesi
Name:slc25a38b
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
ProteomesiUP000000437 Componenti: Chromosome 6

Organism-specific databases

ZFINiZDB-GENE-110214-1. slc25a38b.

Subcellular locationi

Mitochondrion inner membrane UniRule annotation; Multi-pass membrane protein UniRule annotation

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei13 – 3826Helical; Name=1UniRule annotationAdd
BLAST
Transmembranei72 – 9827Helical; Name=2UniRule annotationAdd
BLAST
Transmembranei110 – 13526Helical; Name=3UniRule annotationAdd
BLAST
Transmembranei163 – 18624Helical; Name=4UniRule annotationAdd
BLAST
Transmembranei202 – 22827Helical; Name=5UniRule annotationAdd
BLAST
Transmembranei257 – 27519Helical; Name=6UniRule annotationAdd
BLAST

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
  2. mitochondrial inner membrane Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Membrane, Mitochondrion, Mitochondrion inner membrane

Pathology & Biotechi

Disruption phenotypei

Fishes lacking both slc25a38a and slc25a38b display anemia.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 287287Solute carrier family 25 member 38-BPRO_0000378921Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliP0CAT2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati7 – 9791Solcar 1Add
BLAST
Repeati104 – 18885Solcar 2Add
BLAST
Repeati198 – 28285Solcar 3Add
BLAST

Sequence similaritiesi

Belongs to the mitochondrial carrier (TC 2.A.29) family. SLC25A38 subfamily. [View classification]UniRule annotation
Contains 3 Solcar repeats.UniRule annotation

Keywords - Domaini

Repeat, Transmembrane, Transmembrane helix

Phylogenomic databases

GeneTreeiENSGT00550000075117.
HOGENOMiHOG000006978.
InParanoidiP0CAT2.
KOiK15118.
OrthoDBiEOG7BGHMD.

Family and domain databases

Gene3Di1.50.40.10. 1 hit.
HAMAPiMF_03064. SLC25A38.
InterProiIPR002067. Mit_carrier.
IPR018108. Mitochondrial_sb/sol_carrier.
IPR023395. Mt_carrier_dom.
[Graphical view]
PfamiPF00153. Mito_carr. 3 hits.
[Graphical view]
PRINTSiPR00926. MITOCARRIER.
SUPFAMiSSF103506. SSF103506. 1 hit.
PROSITEiPS50920. SOLCAR. 3 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0CAT2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEVALAHPAL KAFMCGSLSG TCSTLLFQPL DLVKTRLQTL QNNMHPGAPK
60 70 80 90 100
VGMITVLFNV IRTEKLLGLW KGVSPSFMRC IPGVGIYFST FYSLKQHYFQ
110 120 130 140 150
EGSPSAGEAV LLGAGARCVA GVAMLPFTVI KTRFESGRYN YISVAGALKS
160 170 180 190 200
VCQNEGPKAL YSGLTATLLR DAPFSGIYVM FYSQAKKALP QEISSSSIAP
210 220 230 240 250
LVNFGCGVVA GILASLATQP ADVIKTHMQV SPALYPKTSD AMRHVYVKHG
260 270 280
LSGFFRGAVP RSLRRTLMAA MAWTVYEQLM ARMGLKS
Length:287
Mass (Da):30,986
Last modified:February 19, 2014 - v2
Checksum:iDAD41466C96E5540
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR925711 Genomic DNA. No translation available.
RefSeqiNP_001189387.1. NM_001202458.1.
UniGeneiDr.94238.

Genome annotation databases

EnsembliENSDART00000151545; ENSDARP00000126117; ENSDARG00000074533.
GeneIDi571961.
KEGGidre:571961.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR925711 Genomic DNA. No translation available.
RefSeqiNP_001189387.1. NM_001202458.1.
UniGeneiDr.94238.

3D structure databases

ProteinModelPortaliP0CAT2.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSDART00000151545; ENSDARP00000126117; ENSDARG00000074533.
GeneIDi571961.
KEGGidre:571961.

Organism-specific databases

CTDi571961.
ZFINiZDB-GENE-110214-1. slc25a38b.

Phylogenomic databases

GeneTreeiENSGT00550000075117.
HOGENOMiHOG000006978.
InParanoidiP0CAT2.
KOiK15118.
OrthoDBiEOG7BGHMD.

Family and domain databases

Gene3Di1.50.40.10. 1 hit.
HAMAPiMF_03064. SLC25A38.
InterProiIPR002067. Mit_carrier.
IPR018108. Mitochondrial_sb/sol_carrier.
IPR023395. Mt_carrier_dom.
[Graphical view]
PfamiPF00153. Mito_carr. 3 hits.
[Graphical view]
PRINTSiPR00926. MITOCARRIER.
SUPFAMiSSF103506. SSF103506. 1 hit.
PROSITEiPS50920. SOLCAR. 3 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The zebrafish reference genome sequence and its relationship to the human genome."
    Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.
    , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Eliott D., Threadgold G., Harden G., Ware D., Mortimer B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
    Nature 496:498-503(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Tuebingen.
  2. Cited for: DISRUPTION PHENOTYPE.

Entry informationi

Entry nameiS238B_DANRE
AccessioniPrimary (citable) accession number: P0CAT2
Secondary accession number(s): I3IT61
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 7, 2009
Last sequence update: February 19, 2014
Last modified: January 7, 2015
This is version 35 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.