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Protein

JmjC domain-containing protein 7

Gene

Jmjd7

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
JmjC domain-containing protein 7
Alternative name(s):
Jumonji domain-containing protein 7
Gene namesi
Name:Jmjd7
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 2

Organism-specific databases

MGIiMGI:3845785. Jmjd7.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 316316JmjC domain-containing protein 7PRO_0000349375Add
BLAST

Proteomic databases

EPDiP0C872.
MaxQBiP0C872.
PRIDEiP0C872.

PTM databases

PhosphoSiteiP0C872.

Expressioni

Gene expression databases

BgeeiENSMUSG00000098789.
ExpressionAtlasiP0C872. baseline and differential.
GenevisibleiP0C872. MM.

Structurei

Secondary structure

316
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi1 – 2323Combined sources
Beta strandi31 – 344Combined sources
Helixi38 – 447Combined sources
Turni45 – 495Combined sources
Beta strandi52 – 565Combined sources
Helixi63 – 664Combined sources
Helixi69 – 768Combined sources
Beta strandi79 – 8911Combined sources
Beta strandi92 – 954Combined sources
Beta strandi98 – 1014Combined sources
Beta strandi103 – 1086Combined sources
Helixi109 – 1179Combined sources
Beta strandi118 – 1203Combined sources
Beta strandi123 – 1286Combined sources
Turni131 – 1333Combined sources
Helixi134 – 1385Combined sources
Helixi140 – 1456Combined sources
Helixi151 – 1577Combined sources
Beta strandi162 – 1698Combined sources
Beta strandi175 – 1784Combined sources
Beta strandi181 – 19111Combined sources
Beta strandi193 – 1986Combined sources
Helixi200 – 2056Combined sources
Beta strandi209 – 21810Combined sources
Beta strandi224 – 2285Combined sources
Beta strandi235 – 2373Combined sources
Beta strandi242 – 2443Combined sources
Turni247 – 2493Combined sources
Helixi251 – 2555Combined sources
Beta strandi259 – 2635Combined sources
Beta strandi267 – 2715Combined sources
Beta strandi276 – 2816Combined sources
Beta strandi285 – 2939Combined sources
Helixi298 – 31215Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4QSZX-ray2.86A/B2-312[»]
4QU2X-ray2.70A/B1-316[»]
ProteinModelPortaliP0C872.
SMRiP0C872. Positions 1-316.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini128 – 307180JmjCPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 JmjC domain.PROSITE-ProRule annotation

Phylogenomic databases

GeneTreeiENSGT00840000130020.
HOGENOMiHOG000264513.
HOVERGENiHBG054447.
InParanoidiP0C872.
KOiK19219.
OMAiCIIRNAF.
OrthoDBiEOG091G0G26.

Family and domain databases

InterProiIPR003347. JmjC_dom.
[Graphical view]
SMARTiSM00558. JmjC. 1 hit.
[Graphical view]
PROSITEiPS51184. JMJC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0C872-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAEAALEAVR RALQEFPAAA RDLNVPRVVP YLDEPPSPLC FYRDWVCPNR
60 70 80 90 100
PCIIRNALQH WPALQKWSLS YLRATVGSTE VSVAVTPDGY ADAVRGDRFV
110 120 130 140 150
MPAERRLPIS HVLDVLEGRA QHPGVLYVQK QCSNLPTELP QLLSDIESHV
160 170 180 190 200
PWASESLGKM PDAVNFWLGD ASAVTSLHKD HYENLYCVVS GEKHFLLHPP
210 220 230 240 250
SDRPFIPYNL YTPATYQLTE EGTFRVVDEE AMEKVPWIPL DPLAPDLTQY
260 270 280 290 300
PSYSQAQALH CTVRAGEMLY LPALWFHHVQ QSHGCIAVNF WYDMEYDLKY
310
SYFQLMDTLT RATGLD
Length:316
Mass (Da):35,917
Last modified:September 2, 2008 - v1
Checksum:i710E3887F066353E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC016255 mRNA. Translation: AAH16255.1.
CCDSiCCDS50676.1.
RefSeqiNP_001108109.1. NM_001114637.1.
UniGeneiMm.482417.

Genome annotation databases

EnsembliENSMUST00000044675; ENSMUSP00000041220; ENSMUSG00000098789.
GeneIDi433466.
KEGGimmu:433466.
UCSCiuc008luy.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC016255 mRNA. Translation: AAH16255.1.
CCDSiCCDS50676.1.
RefSeqiNP_001108109.1. NM_001114637.1.
UniGeneiMm.482417.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4QSZX-ray2.86A/B2-312[»]
4QU2X-ray2.70A/B1-316[»]
ProteinModelPortaliP0C872.
SMRiP0C872. Positions 1-316.
ModBaseiSearch...
MobiDBiSearch...

PTM databases

PhosphoSiteiP0C872.

Proteomic databases

EPDiP0C872.
MaxQBiP0C872.
PRIDEiP0C872.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000044675; ENSMUSP00000041220; ENSMUSG00000098789.
GeneIDi433466.
KEGGimmu:433466.
UCSCiuc008luy.2. mouse.

Organism-specific databases

CTDi100137047.
MGIiMGI:3845785. Jmjd7.

Phylogenomic databases

GeneTreeiENSGT00840000130020.
HOGENOMiHOG000264513.
HOVERGENiHBG054447.
InParanoidiP0C872.
KOiK19219.
OMAiCIIRNAF.
OrthoDBiEOG091G0G26.

Miscellaneous databases

PROiP0C872.
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000098789.
ExpressionAtlasiP0C872. baseline and differential.
GenevisibleiP0C872. MM.

Family and domain databases

InterProiIPR003347. JmjC_dom.
[Graphical view]
SMARTiSM00558. JmjC. 1 hit.
[Graphical view]
PROSITEiPS51184. JMJC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiJMJD7_MOUSE
AccessioniPrimary (citable) accession number: P0C872
Secondary accession number(s): A2AP62
, Q4QQM1, Q80VV8, Q91W88
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 2, 2008
Last sequence update: September 2, 2008
Last modified: September 7, 2016
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Caution

This sequence was first thought to be an alternatively spliced isoform of Pla2g4b. It is derived from Jmjd7 which is located upstream of Pla2g4b. Most tissues also express read-through transcripts from Jmjd7 into the downstream Pla2g4b gene, some of which may encode fusion proteins combining the N-terminus of this protein with PLA2G4B protein.Curated

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.