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P0C852 (CU113_HUMAN) Reviewed, UniProtKB/Swiss-Prot

Last modified January 22, 2014. Version 19. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Putative uncharacterized protein encoded by LINC00162
Alternative name(s):
Putative narcolepsy candidate region 1 gene C protein
Short name=NLC1-C
Gene names
Name:LINC00162
Synonyms:C21orf113, NCRNA00162
OrganismHomo sapiens (Human) [Reference proteome]
Taxonomic identifier9606 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Protein attributes

Sequence length66 AA.
Sequence statusComplete.
Protein existenceUncertain

General annotation (Comments)

Tissue specificity

Detected in spleen, pancreas, hypothalamus, brain, sperm and lung. Ref.2

Caution

Was first identified as candidate gene for susceptibility or resistance to narcolepsy, but more detailed analysis excluded a link to narcolepsy.

Product of a dubious gene prediction. May be a non-coding RNA.

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 6666Putative uncharacterized protein encoded by LINC00162
PRO_0000347232

Sequences

Sequence LengthMass (Da)Tools
P0C852 [UniParc].

Last modified September 2, 2008. Version 1.
Checksum: 63A694B6D065BCCD

FASTA666,569
        10         20         30         40         50         60 
MTSSMGNAQR RGLPGAGRRG HRSAGCGDGV SPAGGGWLTL ALHRSGGGPD AAELPGLSRG 


KFRALL 

« Hide

References

« Hide 'large scale' references
[1]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Cervix carcinoma.
[2]"Genomewide association analysis of human narcolepsy and a new resistance gene."
Kawashima M., Tamiya G., Oka A., Hohjoh H., Juji T., Ebisawa T., Honda Y., Inoko H., Tokunaga K.
Am. J. Hum. Genet. 79:252-263(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: IDENTIFICATION, LACK OF INVOLVEMENT WITH NARCOLEPSY, TISSUE SPECIFICITY.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BC027456 mRNA. No translation available.
UniGeneHs.534828.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Proteomic databases

PRIDEP0C852.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Organism-specific databases

GeneCardsGC21M046550.
HGNCHGNC:19725. LINC00162.
neXtProtNX_P0C852.
GenAtlasSearch...

Gene expression databases

CleanExHS_NCRNA00162.
GenevestigatorP0C852.

Family and domain databases

ProtoNetSearch...

Entry information

Entry nameCU113_HUMAN
AccessionPrimary (citable) accession number: P0C852
Entry history
Integrated into UniProtKB/Swiss-Prot: September 2, 2008
Last sequence update: September 2, 2008
Last modified: January 22, 2014
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Relevant documents

Human chromosome 21

Human chromosome 21: entries, gene names and cross-references to MIM