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Protein

Putative uncharacterized protein encoded by LINC00162

Gene

LINC00162

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein uncertaini

Names & Taxonomyi

Protein namesi
Recommended name:
Putative uncharacterized protein encoded by LINC00162
Alternative name(s):
Putative narcolepsy candidate region 1 gene C protein
Short name:
NLC1-C
Gene namesi
Name:LINC00162
Synonyms:C21orf113, NCRNA00162
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640 Componenti: Unplaced

Organism-specific databases

HGNCiHGNC:19725. LINC00162.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 6666Putative uncharacterized protein encoded by LINC00162PRO_0000347232Add
BLAST

Proteomic databases

PRIDEiP0C852.

Expressioni

Tissue specificityi

Detected in spleen, pancreas, hypothalamus, brain, sperm and lung.1 Publication

Gene expression databases

CleanExiHS_NCRNA00162.
GenevestigatoriP0C852.

Sequencei

Sequence statusi: Complete.

P0C852-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTSSMGNAQR RGLPGAGRRG HRSAGCGDGV SPAGGGWLTL ALHRSGGGPD
60
AAELPGLSRG KFRALL
Length:66
Mass (Da):6,569
Last modified:September 1, 2008 - v1
Checksum:i63A694B6D065BCCD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC027456 mRNA. No translation available.
UniGeneiHs.534828.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC027456 mRNA. No translation available.
UniGeneiHs.534828.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiP0C852.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

GeneCardsiGC21M046737.
HGNCiHGNC:19725. LINC00162.
neXtProtiNX_P0C852.
GenAtlasiSearch...

Gene expression databases

CleanExiHS_NCRNA00162.
GenevestigatoriP0C852.

Family and domain databases

ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Cervix carcinoma.
  2. "Genomewide association analysis of human narcolepsy and a new resistance gene."
    Kawashima M., Tamiya G., Oka A., Hohjoh H., Juji T., Ebisawa T., Honda Y., Inoko H., Tokunaga K.
    Am. J. Hum. Genet. 79:252-263(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION, LACK OF INVOLVEMENT WITH NARCOLEPSY, TISSUE SPECIFICITY.

Entry informationi

Entry nameiCU113_HUMAN
AccessioniPrimary (citable) accession number: P0C852
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 1, 2008
Last sequence update: September 1, 2008
Last modified: January 6, 2015
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Caution

Was first identified as candidate gene for susceptibility or resistance to narcolepsy, but more detailed analysis excluded a link to narcolepsy.Curated
Product of a dubious gene prediction. May be a non-coding RNA.Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 21
    Human chromosome 21: entries, gene names and cross-references to MIM

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.