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Protein

Non-structural protein 6

Gene
N/A
Organism
Rotavirus A (strain RVA/Human/Japan/AU-1/1982/G3P3[9]) (RV-A)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Names & Taxonomyi

Protein namesi
Recommended name:
Non-structural protein 6
Short name:
NSP6
OrganismiRotavirus A (strain RVA/Human/Japan/AU-1/1982/G3P3[9]) (RV-A)
Taxonomic identifieri39013 [NCBI]
Taxonomic lineageiVirusesdsRNA virusesReoviridaeSedoreovirinaeRotavirusRotavirus A
Virus hostiHomo sapiens (Human) [TaxID: 9606]
Proteomesi
  • UP000001454 Componenti: Genome

Subcellular locationi

  • Host cytoplasm

  • Note: Found in spherical cytoplasmic structures, called virus factories, that appear early after infection and are the site of viral replication and packaging.By similarity

GO - Cellular componenti

Keywords - Cellular componenti

Host cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003695181 – 74Non-structural protein 6Add BLAST74

Interactioni

Subunit structurei

Interacts with NSP5.By similarity

Family & Domainsi

Sequence similaritiesi

Belongs to the rotavirus A NSP6 family.Curated

Phylogenomic databases

OrthoDBiVOG090001DO.

Family and domain databases

InterProiView protein in InterPro
IPR006950. Rotavirus_NSP6.
PfamiView protein in Pfam
PF04866. Rota_NS6. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD008065. Rota_NS6. 1 hit.

Sequencei

Sequence statusi: Complete.

P0C713-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNHLQQRQLF LENLLVGVNN TFHQMQKRSV STCCQSLQKI LDHLILLQTI
60 70
HSPVFRLDRM QLRQMQTLAC LWIH
Length:74
Mass (Da):8,839
Last modified:April 14, 2009 - v1
Checksum:i5AE7E36030B08D82
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB008656 mRNA. No translation available.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB008656 mRNA. No translation available.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

OrthoDBiVOG090001DO.

Family and domain databases

InterProiView protein in InterPro
IPR006950. Rotavirus_NSP6.
PfamiView protein in Pfam
PF04866. Rota_NS6. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD008065. Rota_NS6. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiNSP6_ROTH3
AccessioniPrimary (citable) accession number: P0C713
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: April 14, 2009
Last modified: February 15, 2017
This is version 17 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.