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P0C710

- NSP6_ROT41

UniProt

P0C710 - NSP6_ROT41

Protein

Non-structural protein 6

Gene
N/A
Organism
Rotavirus A (isolate Human/Belgium/B4106/2000 G3-P11[14]-I2-R2-C2-M3-A9-N2-T6-E5-H3) (RV-A) (Rotavirus A (isolate B4106))
Status
Reviewed - Annotation score: 1 out of 5- Protein inferred from homologyi
  1. Names & Taxonomyi

    Protein namesi
    Recommended name:
    Non-structural protein 6
    Short name:
    NSP6
    OrganismiRotavirus A (isolate Human/Belgium/B4106/2000 G3-P11[14]-I2-R2-C2-M3-A9-N2-T6-E5-H3) (RV-A) (Rotavirus A (isolate B4106))
    Taxonomic identifieri578843 [NCBI]
    Taxonomic lineageiVirusesdsRNA virusesReoviridaeSedoreovirinaeRotavirusRotavirus A
    Virus hostiHomo sapiens (Human) [TaxID: 9606]
    ProteomesiUP000008655: Genome

    Subcellular locationi

    Host cytoplasm
    Note: Found in spherical cytoplasmic structures, called virus factories, that appear early after infection and are the site of viral replication and packaging.By similarity

    GO - Cellular componenti

    1. host cell cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Host cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 9696Non-structural protein 6PRO_0000369509Add
    BLAST

    Interactioni

    Subunit structurei

    Interacts with NSP5.By similarity

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the rotavirus A NSP6 family.Curated

    Family and domain databases

    InterProiIPR006950. Rotavirus_NSP6.
    [Graphical view]
    PfamiPF04866. Rota_NS6. 1 hit.
    [Graphical view]
    ProDomiPD008065. Rota_NS6. 1 hit.
    [Graphical view] [Entries sharing at least one domain]

    Sequencei

    Sequence statusi: Complete.

    P0C710-1 [UniParc]FASTAAdd to Basket

    « Hide

    MNHRQQRQLF LENLLVGMNC MFHQMQKRSI NTCCQNLQKI LDRLILLQTI   50
    HSPAFRLDRM QLRQMQTLAC LWIHQHNHDH QVMLGAIKWI SPLTKQ 96
    Length:96
    Mass (Da):11,557
    Last modified:April 14, 2009 - v1
    Checksum:i3C37D0A267D04847
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AY740731 Genomic RNA. No translation available.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AY740731 Genomic RNA. No translation available.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Family and domain databases

    InterProi IPR006950. Rotavirus_NSP6.
    [Graphical view ]
    Pfami PF04866. Rota_NS6. 1 hit.
    [Graphical view ]
    ProDomi PD008065. Rota_NS6. 1 hit.
    [Graphical view ] [Entries sharing at least one domain ]
    ProtoNeti Search...

    Publicationsi

    1. "Full genomic analysis of human rotavirus strain B4106 and lapine rotavirus strain 30/96 provides evidence for interspecies transmission."
      Matthijnssens J., Rahman M., Martella V., Xuelei Y., De Vos S., De Leener K., Ciarlet M., Buonavoglia C., Van Ranst M.
      J. Virol. 80:3801-3810(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

    Entry informationi

    Entry nameiNSP6_ROT41
    AccessioniPrimary (citable) accession number: P0C710
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: April 14, 2009
    Last sequence update: April 14, 2009
    Last modified: October 1, 2014
    This is version 12 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programViral Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3