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P0C5J2 (B9D1_RAT) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 50. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
B9 domain-containing protein 1
Alternative name(s):
Endothelial precursor cells protein B9
Gene names
Name:B9d1
Synonyms:Eppb9
OrganismRattus norvegicus (Rat) [Reference proteome]
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Protein attributes

Sequence length204 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Function

Component of the tectonic-like complex, a complex localized at the transition zone of primary cilia and acting as a barrier that prevents diffusion of transmembrane proteins between the cilia and plasma membranes. Required for ciliogenesis and sonic hedgehog/SHH signaling By similarity.

Subunit structure

Part of the tectonic-like complex (also named B9 complex) By similarity.

Subcellular location

Cytoplasmcytoskeletoncilium basal body By similarity. Note: Localizes at the transition zone, a region between the basal body and the ciliary axoneme By similarity.

Sequence similarities

Belongs to the B9D family.

Contains 1 B9 domain.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 204204B9 domain-containing protein 1
PRO_0000307669

Regions

Domain9 – 127119B9

Sequences

Sequence LengthMass (Da)Tools
P0C5J2 [UniParc].

Last modified October 23, 2007. Version 1.
Checksum: 144D2EA35B002C58

FASTA20422,655
        10         20         30         40         50         60 
MAAASPSVFL LMVNGQVESA QFPEYDDLYC KYCFVYGQDW APTAGLEEGI SQIASKSQDV 

        70         80         90        100        110        120 
RQALVWNFPI DVTFKSTNPY GWPQIVLSVY GPDVFGNDVV RGYGAVHVPF SPGRHKRTIP 

       130        140        150        160        170        180 
MFVPESTSTL QKFTSWFMGR RPEYTDPKVV AQGEGREVTR VRSQGFVTLL FNVVTKDMKK 

       190        200 
LGYDTGPVDT QGVLSPSLPQ GNPQ 

« Hide

References

[1]"Rat genome project: generation of a rat EST (REST) catalog & rat gene index."
Lee N.H., Glodek A., Chandra I., Mason T.M., Quackenbush J., Kerlavage A.R., Adams M.D.
Submitted (MAY-2000) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Embryo.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AW915603 mRNA. No translation available.
RefSeqNP_001099256.1. NM_001105786.1.
XP_003750891.1. XM_003750843.2.
UniGeneRn.3741.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Proteomic databases

PaxDbP0C5J2.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000003402; ENSRNOP00000003402; ENSRNOG00000002462.
ENSRNOT00000075073; ENSRNOP00000065889; ENSRNOG00000047790.
GeneID100911746.
287383.
KEGGrno:100911746.
rno:287383.
UCSCRGD:1305522. rat.

Organism-specific databases

CTD27077.
RGD1305522. B9d1.

Phylogenomic databases

eggNOGNOG271150.
GeneTreeENSGT00530000063756.
HOGENOMHOG000038832.
HOVERGENHBG104431.
InParanoidP0C5J2.
KOK16744.
OMAWPQLVVS.
OrthoDBEOG78D7M7.
PhylomeDBP0C5J2.

Gene expression databases

GenevestigatorP0C5J2.

Family and domain databases

InterProIPR010796. B9_dom.
[Graphical view]
PfamPF07162. B9-C2. 1 hit.
[Graphical view]
PROSITEPS51381. B9. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio626001.
PROP0C5J2.

Entry information

Entry nameB9D1_RAT
AccessionPrimary (citable) accession number: P0C5J2
Entry history
Integrated into UniProtKB/Swiss-Prot: October 23, 2007
Last sequence update: October 23, 2007
Last modified: May 14, 2014
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families