Photosystem Q(B) protein precursor - Oryza sativa subsp. japonica (Rice)

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P0C434 (PSBA_ORYSJ) Reviewed, UniProtKB/Swiss-Prot

Last modified December 14, 2011. Version 36. History...

Clusters with 100%, 90%, 50% identity |

Documents (2) |

Third-party data

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents Customize order

Names and origin

Protein names

Recommended name:
Photosystem Q(B) protein
EC=1.10.3.9

Alternative name(s):
32 kDa thylakoid membrane protein
Photosystem II protein D1

Gene names

Name:	psbA
ORF Names:	Nip001

Encoded on

Plastid; Chloroplast

Organism

Oryza sativa subsp. japonica (Rice)

Taxonomic identifier

39947 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza

Protein attributes

Sequence length	353 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Inferred from homology

General annotation (Comments)

Function	This is one of the two reaction center proteins of photosystem II By similarity. HAMAP MF_01379
Catalytic activity	2 H₂O + 2 plastoquinone + 4 light = O₂ + 2 plastoquinol. HAMAP MF_01379
Cofactor	The psbA/B heterodimer binds P680, the primary electron donor of PSII. It shares a non-heme iron and each subunit binds additional chlorophylls and pheophytin. PsbA provides most of the ligands for the Mn-cluster of the oxygen-evolving complex By similarity.
Subunit structure	The psbA/B heterodimer binds the P680 chlorophylls and subsequent electron acceptors. PSII consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. PSII forms dimeric complexes By similarity.
Subcellular location	Plastid › chloroplast thylakoid membrane; Multi-pass membrane protein By similarity HAMAP MF_01379.
Miscellaneous	Herbicides such as atrazine, BNT, diuron or ioxynil bind to Q(B) and block electron transport By similarity. HAMAP MF_01379
Sequence similarities	Belongs to the reaction center pufL/M/psbA/D family.
Caution	A stretch of the chloroplast genome is duplicated within chromosomes 4 and 8 resulting in the duplication of the gene. The expression of these duplicated genes (Os04g0236400 and Os08g0455300) has not been demonstrated.

Ontologies

Keywords
Biological process	Electron transport Herbicide resistance Photosynthesis Transport
Cellular component	Chloroplast Membrane Photosystem II Plastid Thylakoid
Domain	Transmembrane Transmembrane helix
Ligand	Iron Metal-binding
Molecular function	Oxidoreductase
PTM	Acetylation Phosphoprotein
Gene Ontology (GO)
Biological process	photosynthetic electron transport in photosystem II Inferred from electronic annotation. Source: InterPro response to herbicide Inferred from electronic annotation. Source: UniProtKB-KW transport Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	chloroplast thylakoid membrane Inferred from electronic annotation. Source: UniProtKB-SubCell integral to membrane Inferred from electronic annotation. Source: UniProtKB-KW light-harvesting complex Inferred from electronic annotation. Source: InterPro photosystem II Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity Inferred from electronic annotation. Source: InterPro metal ion binding Inferred from electronic annotation. Source: UniProtKB-KW oxidoreductase activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Initiator methionine

Removed By similarity

Chain

2 – 344

343

Photosystem Q(B) protein HAMAP MF_01379

PRO_0000290038

Propeptide

345 – 353

Potential

PRO_0000316471

Regions

Transmembrane

36 – 56

Helical; Potential

Transmembrane

109 – 129

Helical; Potential

Transmembrane

141 – 164

Helical; Potential

Transmembrane

192 – 218

Helical; Potential

Transmembrane

269 – 289

Helical; Potential

Sites

Metal binding

215

Iron; shared with heterodimeric partner By similarity

Metal binding

272

Iron; shared with heterodimeric partner By similarity

Site

344 – 345

Cleavage; by ctpA By similarity

Amino acid modifications

Modified residue

N-acetylthreonine By similarity

Modified residue

Phosphothreonine By similarity

Sequences

Sequence

Length

Mass (Da)

Tools

P0C434 [UniParc].

Last modified June 12, 2007. Version 1.
Checksum: 0A72FB4531E571CF
Show »

FASTA

353

38,963

        10         20         30         40         50         60 
MTAILERRES TSLWGRFCNW ITSTENRLYI GWFGVLMIPT LLTATSVFII AFIAAPPVDI 

        70         80         90        100        110        120 
DGIREPVSGS LLYGNNIISG AIIPTSAAIG LHFYPIWEAA SVDEWLYNGG PYELIVLHFL 

       130        140        150        160        170        180 
LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF 

       190        200        210        220        230        240 
NFMIVFQAEH NILMHPFHML GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANEGYRFG 

       250        260        270        280        290        300 
QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF 

       310        320        330        340        350 
NFNQSVVDSQ GRVINTWADI INRANLGMEV MHERNAHNFP LDLAALEVPS LNG

« Hide

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Structure of the chloroplast psbA gene encoding the Q-B protein from Oryza sativa L." Wu N.-H., Cote J.-C., Wu R. Dev. Genet. 8:339-350(1987) Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. Strain: cv. Labelle.
[2]	"The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of the cereals." Hiratsuka J., Shimada H., Whittier R., Ishibashi T., Sakamoto M., Mori M., Kondo C., Honji Y., Sun C.-R., Meng B.-Y., Li Y.-Q., Kanno A., Nishizawa Y., Hirai A., Shinozaki K., Sugiura M. Mol. Gen. Genet. 217:185-194(1989) [PubMed: 2770692] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[3]	"A comparison of rice chloroplast genomes." Tang J., Xia H., Cao M., Zhang X., Zeng W., Hu S., Tong W., Wang J., Wang J., Yu J., Yang H., Zhu L. Plant Physiol. 135:412-420(2004) [PubMed: 15122023] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[4]	"Sequence and analysis of rice chromosome 4." Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., Liu Y., Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., Weng Q., Zhang L. Han B. Nature 420:316-320(2002) [PubMed: 12447439] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] (OS04G0236400). Strain: cv. Nipponbare.
[5]	"The map-based sequence of the rice genome." International rice genome sequencing project (IRGSP) Nature 436:793-800(2005) [PubMed: 16100779] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] (OS08G0455300). Strain: cv. Nipponbare.

Cross-references

Sequence databases
EMBL GenBank DDBJ	M36191 Genomic DNA. Translation: AAA84591.1. X15901 Genomic DNA. Translation: CAA34007.1. AY522330 Genomic DNA. Translation: AAS46104.1. BX569685 Genomic DNA. Translation: CAE05900.1. AP004662 Genomic DNA. Translation: BAD09798.1. AP005483 Genomic DNA. Translation: BAD10401.1.
PIR	FMRZ32. JQ0200.
RefSeq	NP_001052296.1. NM_001058831.1. NP_039360.1. NC_001320.1.
UniGene	Os.86519.
3D structure databases
ProteinModelPortal	P0C434.
SMR	P0C434. Positions 10-344.
ModBase	Search...
Protein-protein interaction databases
STRING	P0C434.
Proteomic databases
PRIDE	P0C434.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	LOC_Os04g16770.1; LOC_Os04g16770.1; LOC_Os04g16770. LOC_Os08g35420.1; LOC_Os08g35420.1; LOC_Os08g35420. LOC_Osp1g00110.1; LOC_Osp1g00110.1; LOC_Osp1g00110.
GeneID	3131409. 4335241.
GenomeReviews	Gene locus psbA in contig AY522330_GR.
KEGG	osa:3131409. osa:4335241.
Organism-specific databases
Gramene	P12094.
Phylogenomic databases
HOGENOM	HBG284766.
OMA	PWICLAF.
PhylomeDB	P0C434.
Family and domain databases
HAMAP	MF_01379. PSII_PsbA_D1. [Tree]
InterPro	IPR000484. Photo_RC_L/M. IPR005867. PSII_PsbA/D1. [Graphical view]
Gene3D	G3DSA:1.20.85.10. Photo_RC_L/M. 1 hit.
KO	K02703.
Pfam	PF00124. Photo_RC. 1 hit. [Graphical view]
PRINTS	PR00256. REACTNCENTRE.
SUPFAM	SSF81483. Photo_RC_L/M. 1 hit.
TIGRFAMs	TIGR01151. PsbA. 1 hit.
PROSITE	PS00244. REACTION_CENTER. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

PSBA_ORYSJ

Accession

Primary (citable) accession number: P0C434
Secondary accession number(s): P12094, Q6QY90, Q7DNA9

Entry history

Integrated into UniProtKB/Swiss-Prot:	June 12, 2007
Last sequence update:	June 12, 2007
Last modified:	December 14, 2011
This is version 36 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Plant Protein Annotation Program

Relevant documents

Oryza sativa (rice)

Index of Oryza sativa entries and their corresponding gene designations

SIMILARITY comments

Index of protein domains and families

Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents

Preferred order of sections

Names and origin

Protein attributes

General annotation (Comments)

Ontologies

Sequence annotation (Features)

Molecule processing

Regions

Sites

Amino acid modifications

Sequences

References

Cross-references

Sequence databases

3D structure databases

Protein-protein interaction databases

Proteomic databases

Protocols and materials databases

Genome annotation databases

Organism-specific databases

Phylogenomic databases

Family and domain databases

Entry information

Relevant documents