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P0C2W7

- CT47B_HUMAN

UniProt

P0C2W7 - CT47B_HUMAN

Protein

Cancer/testis antigen 47B

Gene

CT47B1

Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 2 out of 5- Protein predictedi
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    • History
      Entry version 53 (01 Oct 2014)
      Sequence version 1 (01 May 2007)
      Previous versions | rss
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    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Cancer/testis antigen 47B
    Alternative name(s):
    Cancer/testis antigen 47.13
    Short name:
    CT47.13
    Gene namesi
    Name:CT47B1
    Synonyms:CT47.13
    OrganismiHomo sapiens (Human)
    Taxonomic identifieri9606 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
    ProteomesiUP000005640: Chromosome X

    Organism-specific databases

    HGNCiHGNC:33293. CT47B1.

    Pathology & Biotechi

    Organism-specific databases

    PharmGKBiPA164718327.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 299299Cancer/testis antigen 47BPRO_0000286433Add
    BLAST

    Proteomic databases

    PaxDbiP0C2W7.
    PRIDEiP0C2W7.

    Expressioni

    Gene expression databases

    BgeeiP0C2W7.
    GenevestigatoriP0C2W7.

    Organism-specific databases

    HPAiHPA042483.

    Interactioni

    Protein-protein interaction databases

    STRINGi9606.ENSP00000360360.

    Structurei

    3D structure databases

    ProteinModelPortaliP0C2W7.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Coiled coil

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Coiled coili270 – 29829Sequence AnalysisAdd
    BLAST

    Compositional bias

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Compositional biasi92 – 998Poly-Glu
    Compositional biasi168 – 1714Poly-Leu

    Keywords - Domaini

    Coiled coil

    Phylogenomic databases

    eggNOGiNOG125895.
    HOGENOMiHOG000112037.
    HOVERGENiHBG094803.
    InParanoidiP0C2W7.
    OMAiFLYLVHS.
    OrthoDBiEOG71CFNT.
    PhylomeDBiP0C2W7.
    TreeFamiTF342556.

    Family and domain databases

    InterProiIPR028930. CT47.
    [Graphical view]
    PANTHERiPTHR32157. PTHR32157. 1 hit.
    PfamiPF15623. CT47. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P0C2W7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSATGDRHPT QGDQEAPVSQ EGAQAEAAGA GNQEGGDSGP DSSDMVPAAE    50
    VVGVAGPVEG LGEEEGEQAA GLAAVPQGGS AEEDSDIGPA TEEEEEEEEG 100
    NEAANFDLAV ATRRYPAAGI GFVFLYLVHS LLRRLYHNDH IQIANRHLSR 150
    LMVGPHAAVP NLWDNPPLLL LSQRLGAGAA APEGEGLGLI QEAASVQEAA 200
    SVPEPAVPAD LAEMAREPAE EAADEKPPEE AAEEKLTEEA TEEPAAEEPT 250
    SEEAVAPEEV TKSQPEKWDE EAQDAAGEEE KEQEKEKDVE NKVKNSKGT 299
    Length:299
    Mass (Da):31,319
    Last modified:May 1, 2007 - v1
    Checksum:iE2FD8473EE062757
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC008162 Genomic DNA. No translation available.
    CCDSiCCDS48161.1.
    RefSeqiNP_001139190.1. NM_001145718.1.
    UniGeneiHs.729566.

    Genome annotation databases

    EnsembliENST00000371311; ENSP00000360360; ENSG00000236446.
    GeneIDi643311.
    KEGGihsa:643311.
    UCSCiuc011muc.2. human.

    Polymorphism databases

    DMDMi146286097.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC008162 Genomic DNA. No translation available.
    CCDSi CCDS48161.1.
    RefSeqi NP_001139190.1. NM_001145718.1.
    UniGenei Hs.729566.

    3D structure databases

    ProteinModelPortali P0C2W7.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 9606.ENSP00000360360.

    Polymorphism databases

    DMDMi 146286097.

    Proteomic databases

    PaxDbi P0C2W7.
    PRIDEi P0C2W7.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENST00000371311 ; ENSP00000360360 ; ENSG00000236446 .
    GeneIDi 643311.
    KEGGi hsa:643311.
    UCSCi uc011muc.2. human.

    Organism-specific databases

    CTDi 643311.
    GeneCardsi GC0XM120006.
    HGNCi HGNC:33293. CT47B1.
    HPAi HPA042483.
    MIMi 300790. gene.
    neXtProti NX_P0C2W7.
    PharmGKBi PA164718327.
    GenAtlasi Search...

    Phylogenomic databases

    eggNOGi NOG125895.
    HOGENOMi HOG000112037.
    HOVERGENi HBG094803.
    InParanoidi P0C2W7.
    OMAi FLYLVHS.
    OrthoDBi EOG71CFNT.
    PhylomeDBi P0C2W7.
    TreeFami TF342556.

    Miscellaneous databases

    GenomeRNAii 643311.
    NextBioi 114736.
    PROi P0C2W7.
    SOURCEi Search...

    Gene expression databases

    Bgeei P0C2W7.
    Genevestigatori P0C2W7.

    Family and domain databases

    InterProi IPR028930. CT47.
    [Graphical view ]
    PANTHERi PTHR32157. PTHR32157. 1 hit.
    Pfami PF15623. CT47. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The DNA sequence of the human X chromosome."
      Ross M.T., Grafham D.V., Coffey A.J., Scherer S., McLay K., Muzny D., Platzer M., Howell G.R., Burrows C., Bird C.P., Frankish A., Lovell F.L., Howe K.L., Ashurst J.L., Fulton R.S., Sudbrak R., Wen G., Jones M.C.
      , Hurles M.E., Andrews T.D., Scott C.E., Searle S., Ramser J., Whittaker A., Deadman R., Carter N.P., Hunt S.E., Chen R., Cree A., Gunaratne P., Havlak P., Hodgson A., Metzker M.L., Richards S., Scott G., Steffen D., Sodergren E., Wheeler D.A., Worley K.C., Ainscough R., Ambrose K.D., Ansari-Lari M.A., Aradhya S., Ashwell R.I., Babbage A.K., Bagguley C.L., Ballabio A., Banerjee R., Barker G.E., Barlow K.F., Barrett I.P., Bates K.N., Beare D.M., Beasley H., Beasley O., Beck A., Bethel G., Blechschmidt K., Brady N., Bray-Allen S., Bridgeman A.M., Brown A.J., Brown M.J., Bonnin D., Bruford E.A., Buhay C., Burch P., Burford D., Burgess J., Burrill W., Burton J., Bye J.M., Carder C., Carrel L., Chako J., Chapman J.C., Chavez D., Chen E., Chen G., Chen Y., Chen Z., Chinault C., Ciccodicola A., Clark S.Y., Clarke G., Clee C.M., Clegg S., Clerc-Blankenburg K., Clifford K., Cobley V., Cole C.G., Conquer J.S., Corby N., Connor R.E., David R., Davies J., Davis C., Davis J., Delgado O., Deshazo D., Dhami P., Ding Y., Dinh H., Dodsworth S., Draper H., Dugan-Rocha S., Dunham A., Dunn M., Durbin K.J., Dutta I., Eades T., Ellwood M., Emery-Cohen A., Errington H., Evans K.L., Faulkner L., Francis F., Frankland J., Fraser A.E., Galgoczy P., Gilbert J., Gill R., Gloeckner G., Gregory S.G., Gribble S., Griffiths C., Grocock R., Gu Y., Gwilliam R., Hamilton C., Hart E.A., Hawes A., Heath P.D., Heitmann K., Hennig S., Hernandez J., Hinzmann B., Ho S., Hoffs M., Howden P.J., Huckle E.J., Hume J., Hunt P.J., Hunt A.R., Isherwood J., Jacob L., Johnson D., Jones S., de Jong P.J., Joseph S.S., Keenan S., Kelly S., Kershaw J.K., Khan Z., Kioschis P., Klages S., Knights A.J., Kosiura A., Kovar-Smith C., Laird G.K., Langford C., Lawlor S., Leversha M., Lewis L., Liu W., Lloyd C., Lloyd D.M., Loulseged H., Loveland J.E., Lovell J.D., Lozado R., Lu J., Lyne R., Ma J., Maheshwari M., Matthews L.H., McDowall J., McLaren S., McMurray A., Meidl P., Meitinger T., Milne S., Miner G., Mistry S.L., Morgan M., Morris S., Mueller I., Mullikin J.C., Nguyen N., Nordsiek G., Nyakatura G., O'dell C.N., Okwuonu G., Palmer S., Pandian R., Parker D., Parrish J., Pasternak S., Patel D., Pearce A.V., Pearson D.M., Pelan S.E., Perez L., Porter K.M., Ramsey Y., Reichwald K., Rhodes S., Ridler K.A., Schlessinger D., Schueler M.G., Sehra H.K., Shaw-Smith C., Shen H., Sheridan E.M., Shownkeen R., Skuce C.D., Smith M.L., Sotheran E.C., Steingruber H.E., Steward C.A., Storey R., Swann R.M., Swarbreck D., Tabor P.E., Taudien S., Taylor T., Teague B., Thomas K., Thorpe A., Timms K., Tracey A., Trevanion S., Tromans A.C., d'Urso M., Verduzco D., Villasana D., Waldron L., Wall M., Wang Q., Warren J., Warry G.L., Wei X., West A., Whitehead S.L., Whiteley M.N., Wilkinson J.E., Willey D.L., Williams G., Williams L., Williamson A., Williamson H., Wilming L., Woodmansey R.L., Wray P.W., Yen J., Zhang J., Zhou J., Zoghbi H., Zorilla S., Buck D., Reinhardt R., Poustka A., Rosenthal A., Lehrach H., Meindl A., Minx P.J., Hillier L.W., Willard H.F., Wilson R.K., Waterston R.H., Rice C.M., Vaudin M., Coulson A., Nelson D.L., Weinstock G., Sulston J.E., Durbin R.M., Hubbard T., Gibbs R.A., Beck S., Rogers J., Bentley D.R.
      Nature 434:325-337(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    2. "Identification of a new cancer/testis gene family, CT47, among expressed multicopy genes on the human X chromosome."
      Chen Y.-T., Iseli C., Venditti C.A., Old L.J., Simpson A.J.G., Jongeneel C.V.
      Genes Chromosomes Cancer 45:392-400(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: IDENTIFICATION.

    Entry informationi

    Entry nameiCT47B_HUMAN
    AccessioniPrimary (citable) accession number: P0C2W7
    Secondary accession number(s): A6NM97
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 1, 2007
    Last sequence update: May 1, 2007
    Last modified: October 1, 2014
    This is version 53 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program
    DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Human chromosome X
      Human chromosome X: entries, gene names and cross-references to MIM
    2. MIM cross-references
      Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot

    External Data

    Dasty 3