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P0C2H7

- RL27B_YEAST

UniProt

P0C2H7 - RL27B_YEAST

Protein

60S ribosomal protein L27-B

Gene

RPL27B

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 61 (01 Oct 2014)
      Sequence version 1 (06 Mar 2007)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: SGD

    GO - Biological processi

    1. cytoplasmic translation Source: SGD

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Enzyme and pathway databases

    BioCyciYEAST:G3O-29998-MONOMER.
    ReactomeiREACT_188965. SRP-dependent cotranslational protein targeting to membrane.
    REACT_189050. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
    REACT_189183. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
    REACT_217188. Formation of a pool of free 40S subunits.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    60S ribosomal protein L27-B
    Gene namesi
    Name:RPL27B
    Synonyms:RPL27
    Ordered Locus Names:YDR471W
    ORF Names:D8035.14
    OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
    Taxonomic identifieri559292 [NCBI]
    Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
    ProteomesiUP000002311: Chromosome IV

    Organism-specific databases

    SGDiS000002879. RPL27B.

    Subcellular locationi

    Cytoplasm 1 Publication

    GO - Cellular componenti

    1. preribosome, large subunit precursor Source: SGD
    2. ribosome Source: UniProtKB-KW

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11RemovedBy similarity
    Chaini2 – 13613560S ribosomal protein L27-BPRO_0000278967Add
    BLAST

    Proteomic databases

    PaxDbiP0C2H7.

    Expressioni

    Gene expression databases

    GenevestigatoriP0C2H7.

    Interactioni

    Subunit structurei

    Component of the large ribosomal subunit. Mature ribosomes consist of a small (40S) and a large (60S) subunit. The 40S subunit contains 32 different proteins (encoded by 56 genes) and 1 molecule of RNA (18S). The 60S subunit contains 46 different proteins (encoded by 81 genes) and 3 molecules of RNA (25S, 5.8S and 5S).1 Publication

    Protein-protein interaction databases

    BioGridi32524. 116 interactions.
    IntActiP0C2H7. 3 interactions.
    MINTiMINT-8285603.
    STRINGi4932.YDR471W.

    Structurei

    3D structure databases

    ProteinModelPortaliP0C2H7.
    SMRiP0C2H7. Positions 2-136.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L27e family.Curated

    Phylogenomic databases

    eggNOGiCOG2163.
    GeneTreeiENSGT00390000010721.
    HOGENOMiHOG000210138.
    KOiK02901.
    OMAiNAGSSMW.
    OrthoDBiEOG7GXPR2.

    Family and domain databases

    Gene3Di2.30.30.30. 1 hit.
    InterProiIPR014722. Rib_L2_dom2.
    IPR001141. Ribosomal_L27e.
    IPR018262. Ribosomal_L27e_CS.
    IPR008991. Translation_prot_SH3-like.
    [Graphical view]
    PANTHERiPTHR10497. PTHR10497. 1 hit.
    PfamiPF01777. Ribosomal_L27e. 1 hit.
    [Graphical view]
    ProDomiPD009396. Ribosomal_L27e. 1 hit.
    [Graphical view] [Entries sharing at least one domain]
    SUPFAMiSSF50104. SSF50104. 1 hit.
    PROSITEiPS01107. RIBOSOMAL_L27E. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P0C2H7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAKFLKAGKV AVVVRGRYAG KKVVIVKPHD EGSKSHPFGH ALVAGIERYP    50
    SKVTKKHGAK KVAKRTKIKP FIKVVNYNHL LPTRYTLDVE AFKSVVSTET 100
    FEQPSQREEA KKVVKKAFEE RHQAGKNQWF FSKLRF 136
    Length:136
    Mass (Da):15,505
    Last modified:March 6, 2007 - v1
    Checksum:i427D55EC9AB4A2E1
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U33050 Genomic DNA. Translation: AAB64935.1.
    BK006938 Genomic DNA. Translation: DAA12305.1.
    PIRiS69638.
    RefSeqiNP_010759.1. NM_001180779.1.

    Genome annotation databases

    EnsemblFungiiYDR471W; YDR471W; YDR471W.
    GeneIDi852082.
    KEGGisce:YDR471W.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U33050 Genomic DNA. Translation: AAB64935.1 .
    BK006938 Genomic DNA. Translation: DAA12305.1 .
    PIRi S69638.
    RefSeqi NP_010759.1. NM_001180779.1.

    3D structure databases

    ProteinModelPortali P0C2H7.
    SMRi P0C2H7. Positions 2-136.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 32524. 116 interactions.
    IntActi P0C2H7. 3 interactions.
    MINTi MINT-8285603.
    STRINGi 4932.YDR471W.

    Proteomic databases

    PaxDbi P0C2H7.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblFungii YDR471W ; YDR471W ; YDR471W .
    GeneIDi 852082.
    KEGGi sce:YDR471W.

    Organism-specific databases

    SGDi S000002879. RPL27B.

    Phylogenomic databases

    eggNOGi COG2163.
    GeneTreei ENSGT00390000010721.
    HOGENOMi HOG000210138.
    KOi K02901.
    OMAi NAGSSMW.
    OrthoDBi EOG7GXPR2.

    Enzyme and pathway databases

    BioCyci YEAST:G3O-29998-MONOMER.
    Reactomei REACT_188965. SRP-dependent cotranslational protein targeting to membrane.
    REACT_189050. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
    REACT_189183. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
    REACT_217188. Formation of a pool of free 40S subunits.

    Miscellaneous databases

    NextBioi 970394.

    Gene expression databases

    Genevestigatori P0C2H7.

    Family and domain databases

    Gene3Di 2.30.30.30. 1 hit.
    InterProi IPR014722. Rib_L2_dom2.
    IPR001141. Ribosomal_L27e.
    IPR018262. Ribosomal_L27e_CS.
    IPR008991. Translation_prot_SH3-like.
    [Graphical view ]
    PANTHERi PTHR10497. PTHR10497. 1 hit.
    Pfami PF01777. Ribosomal_L27e. 1 hit.
    [Graphical view ]
    ProDomi PD009396. Ribosomal_L27e. 1 hit.
    [Graphical view ] [Entries sharing at least one domain ]
    SUPFAMi SSF50104. SSF50104. 1 hit.
    PROSITEi PS01107. RIBOSOMAL_L27E. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The nucleotide sequence of Saccharomyces cerevisiae chromosome IV."
      Jacq C., Alt-Moerbe J., Andre B., Arnold W., Bahr A., Ballesta J.P.G., Bargues M., Baron L., Becker A., Biteau N., Bloecker H., Blugeon C., Boskovic J., Brandt P., Brueckner M., Buitrago M.J., Coster F., Delaveau T.
      , del Rey F., Dujon B., Eide L.G., Garcia-Cantalejo J.M., Goffeau A., Gomez-Peris A., Granotier C., Hanemann V., Hankeln T., Hoheisel J.D., Jaeger W., Jimenez A., Jonniaux J.-L., Kraemer C., Kuester H., Laamanen P., Legros Y., Louis E.J., Moeller-Rieker S., Monnet A., Moro M., Mueller-Auer S., Nussbaumer B., Paricio N., Paulin L., Perea J., Perez-Alonso M., Perez-Ortin J.E., Pohl T.M., Prydz H., Purnelle B., Rasmussen S.W., Remacha M.A., Revuelta J.L., Rieger M., Salom D., Saluz H.P., Saiz J.E., Saren A.-M., Schaefer M., Scharfe M., Schmidt E.R., Schneider C., Scholler P., Schwarz S., Soler-Mira A., Urrestarazu L.A., Verhasselt P., Vissers S., Voet M., Volckaert G., Wagner G., Wambutt R., Wedler E., Wedler H., Woelfl S., Harris D.E., Bowman S., Brown D., Churcher C.M., Connor R., Dedman K., Gentles S., Hamlin N., Hunt S., Jones L., McDonald S., Murphy L.D., Niblett D., Odell C., Oliver K., Rajandream M.A., Richards C., Shore L., Walsh S.V., Barrell B.G., Dietrich F.S., Mulligan J.T., Allen E., Araujo R., Aviles E., Berno A., Carpenter J., Chen E., Cherry J.M., Chung E., Duncan M., Hunicke-Smith S., Hyman R.W., Komp C., Lashkari D., Lew H., Lin D., Mosedale D., Nakahara K., Namath A., Oefner P., Oh C., Petel F.X., Roberts D., Schramm S., Schroeder M., Shogren T., Shroff N., Winant A., Yelton M.A., Botstein D., Davis R.W., Johnston M., Andrews S., Brinkman R., Cooper J., Ding H., Du Z., Favello A., Fulton L., Gattung S., Greco T., Hallsworth K., Hawkins J., Hillier L.W., Jier M., Johnson D., Johnston L., Kirsten J., Kucaba T., Langston Y., Latreille P., Le T., Mardis E., Menezes S., Miller N., Nhan M., Pauley A., Peluso D., Rifkin L., Riles L., Taich A., Trevaskis E., Vignati D., Wilcox L., Wohldman P., Vaudin M., Wilson R., Waterston R., Albermann K., Hani J., Heumann K., Kleine K., Mewes H.-W., Zollner A., Zaccaria P.
      Nature 387:75-78(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 204508 / S288c.
    2. Cited for: GENOME REANNOTATION.
      Strain: ATCC 204508 / S288c.
    3. "The list of cytoplasmic ribosomal proteins of Saccharomyces cerevisiae."
      Planta R.J., Mager W.H.
      Yeast 14:471-477(1998) [PubMed] [Europe PMC] [Abstract]
      Cited for: NOMENCLATURE, SUBUNIT.
    4. Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
    5. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].

    Entry informationi

    Entry nameiRL27B_YEAST
    AccessioniPrimary (citable) accession number: P0C2H7
    Secondary accession number(s): D6VT95, P38706
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: March 6, 2007
    Last sequence update: March 6, 2007
    Last modified: October 1, 2014
    This is version 61 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programFungal Protein Annotation Program

    Miscellaneousi

    Miscellaneous

    Present with 22900 molecules/cell in log phase SD medium.1 Publication
    There are 2 genes for L27 in yeast.

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Ribosomal proteins
      Ribosomal proteins families and list of entries
    2. SIMILARITY comments
      Index of protein domains and families
    3. Yeast
      Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
    4. Yeast chromosome IV
      Yeast (Saccharomyces cerevisiae) chromosome IV: entries and gene names

    External Data

    Dasty 3