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Protein

39S ribosomal protein L30, mitochondrial

Gene

Mrpl30

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-RNO-5389840. Mitochondrial translation elongation.
R-RNO-5419276. Mitochondrial translation termination.

Names & Taxonomyi

Protein namesi
Recommended name:
39S ribosomal protein L30, mitochondrial
Short name:
L30mt
Short name:
MRP-L30
Gene namesi
Name:Mrpl30
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 9

Organism-specific databases

RGDi1308196. Mrpl30.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transit peptidei1 – 3434Mitochondrion1 PublicationAdd
BLAST
Chaini35 – 16012639S ribosomal protein L30, mitochondrialPRO_0000273240Add
BLAST

Proteomic databases

PaxDbiP0C2C1.

Expressioni

Gene expression databases

ExpressionAtlasiP0C2C1. baseline.
GenevisibleiP0C2C1. RN.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000067807.

Structurei

3D structure databases

ProteinModelPortaliP0C2C1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L30P family.Curated

Keywords - Domaini

Transit peptide

Phylogenomic databases

eggNOGiKOG4799. Eukaryota.
ENOG4111TYH. LUCA.
GeneTreeiENSGT00390000016769.
HOGENOMiHOG000072705.
HOVERGENiHBG082601.
InParanoidiP0C2C1.
KOiK02907.
OMAiLVVQWHL.
OrthoDBiEOG7BP841.
PhylomeDBiP0C2C1.
TreeFamiTF314611.

Family and domain databases

Gene3Di3.30.1390.20. 1 hit.
InterProiIPR016082. Ribosomal_L30_ferredoxin-like.
[Graphical view]
PfamiPF00327. Ribosomal_L30. 1 hit.
[Graphical view]
SUPFAMiSSF55129. SSF55129. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P0C2C1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAGVLRSVFQ RPPGRLQTVK KGAESLIGTE WIRHKFTRSR IPDKVFQPRP
60 70 80 90 100
EDHEKYGGDP QNPHKLHIVT RIRSTKRRPY WEKDTIKMLG LQKAHSPQIH
110 120 130 140 150
KNIPSVNAKL KVVKHLIRIQ PLKLPQGLPT EETMSSTCLK STGELVVQWH
160
LKPVEQEAKS
Length:160
Mass (Da):18,412
Last modified:January 23, 2007 - v1
Checksum:i3B9D6975466B4B3E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR03068288 Genomic DNA. No translation available.
RefSeqiNP_001100373.1. NM_001106903.1.
XP_008765221.1. XM_008766999.1.
XP_008765278.1. XM_008767056.1.
XP_008765279.1. XM_008767057.1.
UniGeneiRn.7068.

Genome annotation databases

EnsembliENSRNOT00000083245; ENSRNOP00000068686; ENSRNOG00000049330.
ENSRNOT00000088544; ENSRNOP00000069419; ENSRNOG00000049330.
GeneIDi103693219.
301352.
KEGGirno:103693219.
rno:301352.
UCSCiRGD:1308196. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR03068288 Genomic DNA. No translation available.
RefSeqiNP_001100373.1. NM_001106903.1.
XP_008765221.1. XM_008766999.1.
XP_008765278.1. XM_008767056.1.
XP_008765279.1. XM_008767057.1.
UniGeneiRn.7068.

3D structure databases

ProteinModelPortaliP0C2C1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000067807.

Proteomic databases

PaxDbiP0C2C1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000083245; ENSRNOP00000068686; ENSRNOG00000049330.
ENSRNOT00000088544; ENSRNOP00000069419; ENSRNOG00000049330.
GeneIDi103693219.
301352.
KEGGirno:103693219.
rno:301352.
UCSCiRGD:1308196. rat.

Organism-specific databases

CTDi103693219.
51263.
RGDi1308196. Mrpl30.

Phylogenomic databases

eggNOGiKOG4799. Eukaryota.
ENOG4111TYH. LUCA.
GeneTreeiENSGT00390000016769.
HOGENOMiHOG000072705.
HOVERGENiHBG082601.
InParanoidiP0C2C1.
KOiK02907.
OMAiLVVQWHL.
OrthoDBiEOG7BP841.
PhylomeDBiP0C2C1.
TreeFamiTF314611.

Enzyme and pathway databases

ReactomeiR-RNO-5389840. Mitochondrial translation elongation.
R-RNO-5419276. Mitochondrial translation termination.

Miscellaneous databases

PROiP0C2C1.

Gene expression databases

ExpressionAtlasiP0C2C1. baseline.
GenevisibleiP0C2C1. RN.

Family and domain databases

Gene3Di3.30.1390.20. 1 hit.
InterProiIPR016082. Ribosomal_L30_ferredoxin-like.
[Graphical view]
PfamiPF00327. Ribosomal_L30. 1 hit.
[Graphical view]
SUPFAMiSSF55129. SSF55129. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown Norway.
  2. "Mammalian mitochondrial ribosomal proteins. N-terminal amino acid sequencing, characterization, and identification of corresponding gene sequences."
    Goldschmidt-Reisin S., Kitakawa M., Herfurth E., Wittmann-Liebold B., Grohmann L., Graack H.-R.
    J. Biol. Chem. 273:34828-34836(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 35-55.

Entry informationi

Entry nameiRM30_RAT
AccessioniPrimary (citable) accession number: P0C2C1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 23, 2007
Last sequence update: January 23, 2007
Last modified: June 8, 2016
This is version 69 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.