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P0C1U4

- GUN9_ORYSJ

UniProt

P0C1U4 - GUN9_ORYSJ

Protein

Endoglucanase 9

Gene

GLU1

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 4 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 59 (01 Oct 2014)
      Sequence version 1 (05 Sep 2006)
      Previous versions | rss
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    Functioni

    Involved in cell wall assembly during cell elongation.1 Publication

    Catalytic activityi

    Endohydrolysis of (1->4)-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei514 – 5141By similarity
    Active sitei562 – 5621By similarity
    Active sitei571 – 5711By similarity

    GO - Molecular functioni

    1. cellulase activity Source: UniProtKB-EC

    GO - Biological processi

    1. cellulose catabolic process Source: UniProtKB-KW

    Keywords - Molecular functioni

    Glycosidase, Hydrolase

    Keywords - Biological processi

    Carbohydrate metabolism, Cell wall biogenesis/degradation, Cellulose degradation, Polysaccharide degradation

    Protein family/group databases

    CAZyiGH9. Glycoside Hydrolase Family 9.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Endoglucanase 9 (EC:3.2.1.4)
    Alternative name(s):
    Endo-1,4-beta glucanase 9
    OsCel9D
    OsGLU1
    Gene namesi
    Name:GLU1
    Ordered Locus Names:Os03g0329500, LOC_Os03g21210
    OrganismiOryza sativa subsp. japonica (Rice)
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 3

    Organism-specific databases

    GrameneiP0C1U4.

    Subcellular locationi

    GO - Cellular componenti

    1. integral component of membrane Source: UniProtKB-KW

    Keywords - Cellular componenti

    Membrane

    Pathology & Biotechi

    Disruption phenotypei

    Plants are dwarf with reduction in cell elongation and decrease in cellulose content.1 Publication

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 619619Endoglucanase 9PRO_0000249286Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Glycosylationi218 – 2181N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi325 – 3251N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi346 – 3461N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi409 – 4091N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi426 – 4261N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi568 – 5681N-linked (GlcNAc...)Sequence Analysis

    Keywords - PTMi

    Glycoprotein

    Expressioni

    Tissue specificityi

    Ubiquitous.2 Publications

    Inductioni

    By gibberellin (GA3) and brassinosteroid.1 Publication

    Interactioni

    Protein-protein interaction databases

    STRINGi39947.LOC_Os03g21210.1.

    Structurei

    3D structure databases

    ProteinModelPortaliP0C1U4.
    ModBaseiSearch...
    MobiDBiSearch...

    Topological domain

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Topological domaini1 – 7474CytoplasmicSequence AnalysisAdd
    BLAST
    Topological domaini96 – 619524ExtracellularSequence AnalysisAdd
    BLAST

    Transmembrane

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transmembranei75 – 9521Helical; Signal-anchor for type II membrane proteinSequence AnalysisAdd
    BLAST

    Family & Domainsi

    Sequence similaritiesi

    Keywords - Domaini

    Signal-anchor, Transmembrane, Transmembrane helix

    Phylogenomic databases

    eggNOGiNOG257354.
    HOGENOMiHOG000021033.
    OMAiHFYSIEV.

    Family and domain databases

    Gene3Di1.50.10.10. 1 hit.
    InterProiIPR008928. 6-hairpin_glycosidase-like.
    IPR012341. 6hp_glycosidase.
    IPR001701. Glyco_hydro_9.
    IPR018221. Glyco_hydro_9_AS.
    [Graphical view]
    PfamiPF00759. Glyco_hydro_9. 1 hit.
    [Graphical view]
    SUPFAMiSSF48208. SSF48208. 1 hit.
    PROSITEiPS00592. GLYCOSYL_HYDROL_F9_1. 1 hit.
    PS00698. GLYCOSYL_HYDROL_F9_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P0C1U4-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSMYGRDPWG GPLEICHDSA TDDDRSRNLD LDRGALSRTL DETQQSWLLA    50
    GPGDQGRKKK KYVDLGCLVV SRKLFVWTVG VLLAAAVFAG LVAGIAKAIP 100
    RHHRPPPPPD DFTVALRKAL MFFNAQKSGK LPKNNNVHWR GNSCMKDGLS 150
    DPAVGRSLVG GYYDAGDAVK FNFPAAFSMT LLSWSVIEYS AKYEAVGELG 200
    HIRDTIKWGA DYFLKTFNST ADTIDRVVMQ VGSGATSPGS TQPNDHYCWM 250
    RPEDIDYPRP VVECHACSDL AAEMAASLAA ASIVFKDNKA YSQKLVHGAT 300
    TLFKFARQNR GRYSAGGSDA AKFYNSTSYW DEFVWGGSWM YLATGNSSYL 350
    QLATHPKLAK HAGAYWGGPD YGVFSWDNKL TGAQVLLSRL RLFLSPGYPY 400
    EEILRTFHNQ TSIIMCSYLP IFKSFNRTKG GLIQLNHGRP QPLQYVVNAA 450
    FLASLYGDYL EAADTPGWYC GPHFYPIETL RNFARTQIEY ILGKNPLKMS 500
    YVVGYGNRYP KRVHHRGASI PKNGVHYGCK GGWKWRETKK PNPNIIVGAM 550
    VAGPDRHDGF KDVRKNYNYT EATLAGNAGL VAALVALSGE GHGVDKNTMF 600
    SAVPPMFPSP PPPPAPWKP 619
    Length:619
    Mass (Da):68,369
    Last modified:September 5, 2006 - v1
    Checksum:i7F3CCB374071162A
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti57 – 571R → Q in AK102748. (PubMed:12869764)Curated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB040817 mRNA. Translation: BAF37261.1.
    DP000009 Genomic DNA. Translation: ABF95745.1.
    AP008209 Genomic DNA. Translation: BAF11918.1.
    AK102748 mRNA. No translation available.
    RefSeqiNP_001050004.1. NM_001056539.1.
    UniGeneiOs.13910.

    Genome annotation databases

    EnsemblPlantsiOS03T0329500-01; OS03T0329500-01; OS03G0329500.
    GeneIDi4332724.
    KEGGiosa:4332724.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB040817 mRNA. Translation: BAF37261.1 .
    DP000009 Genomic DNA. Translation: ABF95745.1 .
    AP008209 Genomic DNA. Translation: BAF11918.1 .
    AK102748 mRNA. No translation available.
    RefSeqi NP_001050004.1. NM_001056539.1.
    UniGenei Os.13910.

    3D structure databases

    ProteinModelPortali P0C1U4.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 39947.LOC_Os03g21210.1.

    Protein family/group databases

    CAZyi GH9. Glycoside Hydrolase Family 9.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi OS03T0329500-01 ; OS03T0329500-01 ; OS03G0329500 .
    GeneIDi 4332724.
    KEGGi osa:4332724.

    Organism-specific databases

    Gramenei P0C1U4.

    Phylogenomic databases

    eggNOGi NOG257354.
    HOGENOMi HOG000021033.
    OMAi HFYSIEV.

    Family and domain databases

    Gene3Di 1.50.10.10. 1 hit.
    InterProi IPR008928. 6-hairpin_glycosidase-like.
    IPR012341. 6hp_glycosidase.
    IPR001701. Glyco_hydro_9.
    IPR018221. Glyco_hydro_9_AS.
    [Graphical view ]
    Pfami PF00759. Glyco_hydro_9. 1 hit.
    [Graphical view ]
    SUPFAMi SSF48208. SSF48208. 1 hit.
    PROSITEi PS00592. GLYCOSYL_HYDROL_F9_1. 1 hit.
    PS00698. GLYCOSYL_HYDROL_F9_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Carbohydrate-binding module of a rice endo-beta-1,4-glycanase, OsCel9A, expressed in auxin-induced lateral root primordia, is post-translationally truncated."
      Yoshida K., Imaizumi N., Kaneko S., Kawagoe Y., Tagiri A., Tanaka H., Nishitani K., Komae K.
      Plant Cell Physiol. 47:1555-1571(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY.
      Strain: cv. Sasanishiki.
      Tissue: Root.
    2. "Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species."
      The rice chromosome 3 sequencing consortium
      Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S.
      , Johri S., Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., Lee H.R., Jiang J., Jackson S.
      Genome Res. 15:1284-1291(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    4. "The rice annotation project database (RAP-DB): 2008 update."
      The rice annotation project (RAP)
      Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENOME REANNOTATION.
      Strain: cv. Nipponbare.
    5. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
      The rice full-length cDNA consortium
      Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Nipponbare.
    6. "OsGLU1, a putative membrane-bound endo-1,4-beta-D-glucanase from rice, affects plant internode elongation."
      Zhou H.-L., He S.-J., Cao Y.-R., Chen T., Du B.-X., Chu C.-C., Zhang J.-S., Chen S.-Y.
      Plant Mol. Biol. 60:137-151(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: FUNCTION, TISSUE SPECIFICITY, INDUCTION, DISRUPTION PHENOTYPE.

    Entry informationi

    Entry nameiGUN9_ORYSJ
    AccessioniPrimary (citable) accession number: P0C1U4
    Secondary accession number(s): A0P890, Q10LZ4
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: September 5, 2006
    Last sequence update: September 5, 2006
    Last modified: October 1, 2014
    This is version 59 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Glycosyl hydrolases
      Classification of glycosyl hydrolase families and list of entries
    2. Oryza sativa (rice)
      Index of Oryza sativa entries and their corresponding gene designations
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3