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P0C1U4

- GUN9_ORYSJ

UniProt

P0C1U4 - GUN9_ORYSJ

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Protein

Endoglucanase 9

Gene

GLU1

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 4 out of 5- Experimental evidence at transcript leveli

Functioni

Involved in cell wall assembly during cell elongation.1 Publication

Catalytic activityi

Endohydrolysis of (1->4)-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei514 – 5141By similarity
Active sitei562 – 5621By similarity
Active sitei571 – 5711By similarity

GO - Molecular functioni

  1. cellulase activity Source: UniProtKB-EC

GO - Biological processi

  1. cellulose catabolic process Source: UniProtKB-KW
  2. cell wall organization Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Glycosidase, Hydrolase

Keywords - Biological processi

Carbohydrate metabolism, Cell wall biogenesis/degradation, Cellulose degradation, Polysaccharide degradation

Protein family/group databases

CAZyiGH9. Glycoside Hydrolase Family 9.

Names & Taxonomyi

Protein namesi
Recommended name:
Endoglucanase 9 (EC:3.2.1.4)
Alternative name(s):
Endo-1,4-beta glucanase 9
OsCel9D
OsGLU1
Gene namesi
Name:GLU1
Ordered Locus Names:Os03g0329500, LOC_Os03g21210
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763: Chromosome 3

Organism-specific databases

GrameneiP0C1U4.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 7474CytoplasmicSequence AnalysisAdd
BLAST
Transmembranei75 – 9521Helical; Signal-anchor for type II membrane proteinSequence AnalysisAdd
BLAST
Topological domaini96 – 619524ExtracellularSequence AnalysisAdd
BLAST

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Membrane

Pathology & Biotechi

Disruption phenotypei

Plants are dwarf with reduction in cell elongation and decrease in cellulose content.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 619619Endoglucanase 9PRO_0000249286Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi218 – 2181N-linked (GlcNAc...)Sequence Analysis
Glycosylationi325 – 3251N-linked (GlcNAc...)Sequence Analysis
Glycosylationi346 – 3461N-linked (GlcNAc...)Sequence Analysis
Glycosylationi409 – 4091N-linked (GlcNAc...)Sequence Analysis
Glycosylationi426 – 4261N-linked (GlcNAc...)Sequence Analysis
Glycosylationi568 – 5681N-linked (GlcNAc...)Sequence Analysis

Keywords - PTMi

Glycoprotein

Expressioni

Tissue specificityi

Ubiquitous.2 Publications

Inductioni

By gibberellin (GA3) and brassinosteroid.1 Publication

Gene expression databases

ExpressionAtlasiP0C1U4. baseline.

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os03g21210.1.

Structurei

3D structure databases

ProteinModelPortaliP0C1U4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Signal-anchor, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiNOG257354.
HOGENOMiHOG000021033.
InParanoidiP0C1U4.
OMAiHFYSIEV.

Family and domain databases

Gene3Di1.50.10.10. 1 hit.
InterProiIPR008928. 6-hairpin_glycosidase-like.
IPR012341. 6hp_glycosidase.
IPR001701. Glyco_hydro_9.
IPR018221. Glyco_hydro_9_AS.
[Graphical view]
PfamiPF00759. Glyco_hydro_9. 1 hit.
[Graphical view]
SUPFAMiSSF48208. SSF48208. 1 hit.
PROSITEiPS00592. GLYCOSYL_HYDROL_F9_1. 1 hit.
PS00698. GLYCOSYL_HYDROL_F9_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0C1U4-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSMYGRDPWG GPLEICHDSA TDDDRSRNLD LDRGALSRTL DETQQSWLLA
60 70 80 90 100
GPGDQGRKKK KYVDLGCLVV SRKLFVWTVG VLLAAAVFAG LVAGIAKAIP
110 120 130 140 150
RHHRPPPPPD DFTVALRKAL MFFNAQKSGK LPKNNNVHWR GNSCMKDGLS
160 170 180 190 200
DPAVGRSLVG GYYDAGDAVK FNFPAAFSMT LLSWSVIEYS AKYEAVGELG
210 220 230 240 250
HIRDTIKWGA DYFLKTFNST ADTIDRVVMQ VGSGATSPGS TQPNDHYCWM
260 270 280 290 300
RPEDIDYPRP VVECHACSDL AAEMAASLAA ASIVFKDNKA YSQKLVHGAT
310 320 330 340 350
TLFKFARQNR GRYSAGGSDA AKFYNSTSYW DEFVWGGSWM YLATGNSSYL
360 370 380 390 400
QLATHPKLAK HAGAYWGGPD YGVFSWDNKL TGAQVLLSRL RLFLSPGYPY
410 420 430 440 450
EEILRTFHNQ TSIIMCSYLP IFKSFNRTKG GLIQLNHGRP QPLQYVVNAA
460 470 480 490 500
FLASLYGDYL EAADTPGWYC GPHFYPIETL RNFARTQIEY ILGKNPLKMS
510 520 530 540 550
YVVGYGNRYP KRVHHRGASI PKNGVHYGCK GGWKWRETKK PNPNIIVGAM
560 570 580 590 600
VAGPDRHDGF KDVRKNYNYT EATLAGNAGL VAALVALSGE GHGVDKNTMF
610
SAVPPMFPSP PPPPAPWKP
Length:619
Mass (Da):68,369
Last modified:September 5, 2006 - v1
Checksum:i7F3CCB374071162A
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti57 – 571R → Q in AK102748. (PubMed:12869764)Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB040817 mRNA. Translation: BAF37261.1.
DP000009 Genomic DNA. Translation: ABF95745.1.
AP008209 Genomic DNA. Translation: BAF11918.1.
AK102748 mRNA. No translation available.
RefSeqiNP_001050004.1. NM_001056539.1.
UniGeneiOs.13910.

Genome annotation databases

EnsemblPlantsiOS03T0329500-01; OS03T0329500-01; OS03G0329500.
GeneIDi4332724.
KEGGiosa:4332724.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB040817 mRNA. Translation: BAF37261.1 .
DP000009 Genomic DNA. Translation: ABF95745.1 .
AP008209 Genomic DNA. Translation: BAF11918.1 .
AK102748 mRNA. No translation available.
RefSeqi NP_001050004.1. NM_001056539.1.
UniGenei Os.13910.

3D structure databases

ProteinModelPortali P0C1U4.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 39947.LOC_Os03g21210.1.

Protein family/group databases

CAZyi GH9. Glycoside Hydrolase Family 9.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi OS03T0329500-01 ; OS03T0329500-01 ; OS03G0329500 .
GeneIDi 4332724.
KEGGi osa:4332724.

Organism-specific databases

Gramenei P0C1U4.

Phylogenomic databases

eggNOGi NOG257354.
HOGENOMi HOG000021033.
InParanoidi P0C1U4.
OMAi HFYSIEV.

Gene expression databases

ExpressionAtlasi P0C1U4. baseline.

Family and domain databases

Gene3Di 1.50.10.10. 1 hit.
InterProi IPR008928. 6-hairpin_glycosidase-like.
IPR012341. 6hp_glycosidase.
IPR001701. Glyco_hydro_9.
IPR018221. Glyco_hydro_9_AS.
[Graphical view ]
Pfami PF00759. Glyco_hydro_9. 1 hit.
[Graphical view ]
SUPFAMi SSF48208. SSF48208. 1 hit.
PROSITEi PS00592. GLYCOSYL_HYDROL_F9_1. 1 hit.
PS00698. GLYCOSYL_HYDROL_F9_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Carbohydrate-binding module of a rice endo-beta-1,4-glycanase, OsCel9A, expressed in auxin-induced lateral root primordia, is post-translationally truncated."
    Yoshida K., Imaizumi N., Kaneko S., Kawagoe Y., Tagiri A., Tanaka H., Nishitani K., Komae K.
    Plant Cell Physiol. 47:1555-1571(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY.
    Strain: cv. Sasanishiki.
    Tissue: Root.
  2. "Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species."
    The rice chromosome 3 sequencing consortium
    Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S.
    , Johri S., Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., Lee H.R., Jiang J., Jackson S.
    Genome Res. 15:1284-1291(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  4. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  5. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
    The rice full-length cDNA consortium
    Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Nipponbare.
  6. "OsGLU1, a putative membrane-bound endo-1,4-beta-D-glucanase from rice, affects plant internode elongation."
    Zhou H.-L., He S.-J., Cao Y.-R., Chen T., Du B.-X., Chu C.-C., Zhang J.-S., Chen S.-Y.
    Plant Mol. Biol. 60:137-151(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION, TISSUE SPECIFICITY, INDUCTION, DISRUPTION PHENOTYPE.

Entry informationi

Entry nameiGUN9_ORYSJ
AccessioniPrimary (citable) accession number: P0C1U4
Secondary accession number(s): A0P890, Q10LZ4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 5, 2006
Last sequence update: September 5, 2006
Last modified: October 29, 2014
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3