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Protein

40S ribosomal protein S28-B

Gene

RPS28B

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • RNA binding Source: GO_Central
  • structural constituent of ribosome Source: SGD

GO - Biological processi

  • cytoplasmic translation Source: SGD
  • maturation of SSU-rRNA Source: GO_Central
  • positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay Source: SGD
  • ribosomal small subunit assembly Source: GO_Central
  • rRNA export from nucleus Source: SGD

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciYEAST:G3O-32364-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S28-B
Alternative name(s):
S33
Small ribosomal subunit protein eS28-B1 Publication
YS27
Gene namesi
Name:RPS28B
Synonyms:RPS33B
Ordered Locus Names:YLR264W
ORF Names:L8479.5
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
Proteomesi
  • UP000002311 Componenti: Chromosome XII

Organism-specific databases

EuPathDBiFungiDB:YLR264W.
SGDiS000004254. RPS28B.

Subcellular locationi

GO - Cellular componenti

  • cytosolic small ribosomal subunit Source: SGD

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001368431 – 6740S ribosomal protein S28-BAdd BLAST67

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei1N-acetylmethionineCombined sources1 Publication1

Post-translational modificationi

N-terminally acetylated by acetyltransferase NatB.1 Publication

Keywords - PTMi

Acetylation

Proteomic databases

MaxQBiP0C0X0.
PRIDEiP0C0X0.
TopDownProteomicsiP0C0X0.

PTM databases

iPTMnetiP0C0X0.

Interactioni

Subunit structurei

Component of the small ribosomal subunit. Mature ribosomes consist of a small (40S) and a large (60S) subunit. The 40S subunit contains 32 different proteins (encoded by 56 genes) and 1 molecule of RNA (18S). The 60S subunit contains 46 different proteins (encoded by 81 genes) and 3 molecules of RNA (25S, 5.8S and 5S).1 Publication

Binary interactionsi

Show more details

Protein-protein interaction databases

BioGridi31532. 153 interactors.
DIPiDIP-1389N.
IntActiP0C0X0. 16 interactors.
MINTiMINT-390389.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
5M1Jelectron microscopy3.30c25-67[»]
5MC6electron microscopy3.80L1-67[»]
ProteinModelPortaliP0C0X0.
SMRiP0C0X0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S28e family.Curated

Phylogenomic databases

HOGENOMiHOG000224552.
InParanoidiP0C0X0.
KOiK02979.
OMAiTEVLCRT.
OrthoDBiEOG092C5Y3A.

Family and domain databases

CDDicd04457. S1_S28E. 1 hit.
HAMAPiMF_00292. Ribosomal_S28e. 1 hit.
InterProiView protein in InterPro
IPR012340. NA-bd_OB-fold.
IPR000289. Ribosomal_S28e.
IPR028626. Ribosomal_S28e_CS.
PANTHERiPTHR10769. PTHR10769. 1 hit.
PfamiView protein in Pfam
PF01200. Ribosomal_S28e. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD005541. Ribosomal_S28e. 1 hit.
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiView protein in PROSITE
PS00961. RIBOSOMAL_S28E. 1 hit.

Sequencei

Sequence statusi: Complete.

P0C0X0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDSKTPVTLA KVIKVLGRTG SRGGVTQVRV EFLEDTSRTI VRNVKGPVRE
60
NDILVLMESE REARRLR
Length:67
Mass (Da):7,565
Last modified:January 10, 2006 - v1
Checksum:iABF5A8353F18A641
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U17244 Genomic DNA. Translation: AAB67375.1.
BK006945 Genomic DNA. Translation: DAA09577.1.
PIRiS51401.
RefSeqiNP_013366.1. NM_001182151.1.

Genome annotation databases

EnsemblFungiiYLR264W; YLR264W; YLR264W.
GeneIDi850969.
KEGGisce:YLR264W.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U17244 Genomic DNA. Translation: AAB67375.1.
BK006945 Genomic DNA. Translation: DAA09577.1.
PIRiS51401.
RefSeqiNP_013366.1. NM_001182151.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
5M1Jelectron microscopy3.30c25-67[»]
5MC6electron microscopy3.80L1-67[»]
ProteinModelPortaliP0C0X0.
SMRiP0C0X0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi31532. 153 interactors.
DIPiDIP-1389N.
IntActiP0C0X0. 16 interactors.
MINTiMINT-390389.

PTM databases

iPTMnetiP0C0X0.

Proteomic databases

MaxQBiP0C0X0.
PRIDEiP0C0X0.
TopDownProteomicsiP0C0X0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiYLR264W; YLR264W; YLR264W.
GeneIDi850969.
KEGGisce:YLR264W.

Organism-specific databases

EuPathDBiFungiDB:YLR264W.
SGDiS000004254. RPS28B.

Phylogenomic databases

HOGENOMiHOG000224552.
InParanoidiP0C0X0.
KOiK02979.
OMAiTEVLCRT.
OrthoDBiEOG092C5Y3A.

Enzyme and pathway databases

BioCyciYEAST:G3O-32364-MONOMER.

Miscellaneous databases

PROiP0C0X0.

Family and domain databases

CDDicd04457. S1_S28E. 1 hit.
HAMAPiMF_00292. Ribosomal_S28e. 1 hit.
InterProiView protein in InterPro
IPR012340. NA-bd_OB-fold.
IPR000289. Ribosomal_S28e.
IPR028626. Ribosomal_S28e_CS.
PANTHERiPTHR10769. PTHR10769. 1 hit.
PfamiView protein in Pfam
PF01200. Ribosomal_S28e. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD005541. Ribosomal_S28e. 1 hit.
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiView protein in PROSITE
PS00961. RIBOSOMAL_S28E. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRS28B_YEAST
AccessioniPrimary (citable) accession number: P0C0X0
Secondary accession number(s): D6VYR1, P02380
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: January 10, 2006
Last modified: March 15, 2017
This is version 98 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 8600 molecules/cell in log phase SD medium.1 Publication
There are 2 genes for S28 in yeast.

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families
  4. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  5. Yeast chromosome XII
    Yeast (Saccharomyces cerevisiae) chromosome XII: entries and gene names

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.