P0C0U4 (RIMK_ECOLI) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 55.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Ribosomal protein S6 modification protein | ||||
| Gene names |
| ||||
| Organism | Escherichia coli (strain K12) | ||||
| Taxonomic identifier | 83333 [NCBI] | ||||
| Taxonomic lineage | Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia |
Protein attributes
| Sequence length | 300 AA. |
| Sequence status | Complete. |
| Protein existence | Inferred from homology |
General annotation (Comments)
| Function | Responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6. HAMAP MF_01552 |
| Cofactor | Binds 2 magnesium or manganese ions per subunit By similarity. |
| Sequence similarities | Belongs to the rimK family. Contains 1 ATP-grasp domain. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Protein biosynthesis |
| Ligand | ATP-binding Magnesium Manganese Metal-binding Nucleotide-binding |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological process | protein modification process Inferred from electronic annotation. Source: InterPro translationInferred from electronic annotation. Source: UniProtKB-KW |
| Molecular function | ATP binding Inferred from electronic annotation. Source: UniProtKB-KW ligase activityInferred from electronic annotation. Source: InterPro metal ion bindingInferred from electronic annotation. Source: UniProtKB-KW |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 300 | 300 | Ribosomal protein S6 modification protein HAMAP MF_01552 | PRO_0000205455 | |||||
Regions | |||||||||
| Domain | 104 – 287 | 184 | ATP-grasp | ||||||
| Nucleotide binding | 131 – 186 | 56 | ATP By similarity | ||||||
Sites | |||||||||
| Metal binding | 248 | 1 | Magnesium or manganese 1 By similarity | ||||||
| Metal binding | 260 | 1 | Magnesium or manganese 1 By similarity | ||||||
| Metal binding | 260 | 1 | Magnesium or manganese 2 By similarity | ||||||
| Metal binding | 262 | 1 | Magnesium or manganese 2 By similarity | ||||||
Experimental info | |||||||||
| Sequence conflict | 1 – 18 | 18 | MKIAI…SCKRL → MERSIRVSGW Ref.1 | ||||||
Sequences
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References
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | X15859 Genomic DNA. Translation: CAA33868.1. U00096 Genomic DNA. Translation: AAC73939.1. AP009048 Genomic DNA. Translation: BAA35563.2. |
| PIR | D64823. |
| RefSeq | NP_415373.1. NC_000913.2. |
3D structure databases | |
| ProteinModelPortal | P0C0U4. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | P0C0U4. 4 interactions. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| EnsemblBacteria | EBESCT00000002883; EBESCP00000002883; EBESCG00000002352. EBESCT00000002884; EBESCP00000002884; EBESCG00000002352. EBESCT00000014809; EBESCP00000014100; EBESCG00000013869. |
| GeneID | 945484. |
| GenomeReviews | Gene locus JW0836 in contig AP009048_GR. Gene locus b0852 in contig U00096_GR. |
| KEGG | ecj:JW0836. eco:b0852. |
| PATRIC | 32116909. VBIEscCol129921_0880. |
Organism-specific databases | |
| EchoBASE | EB0845. |
| EcoGene | EG10852. rimK. |
Phylogenomic databases | |
| eggNOG | COG0189. |
| GeneTree | EBGT00050000009191. |
| HOGENOM | HBG679591. |
| OMA | CREPRLY. |
| PhylomeDB | P0C0U4. |
| ProtClustDB | PRK10446. |
Enzyme and pathway databases | |
| BioCyc | EcoCyc:EG10852-MONOMER. |
Gene expression databases | |
| Genevestigator | P0C0U4. |
Family and domain databases | |
| HAMAP | MF_01552. RimK. [Tree] |
| InterPro | IPR011761. ATP-grasp. IPR013651. ATP-grasp_RimK-type. IPR013815. ATP_grasp_subdomain_1. IPR013816. ATP_grasp_subdomain_2. IPR023533. Ribosomal_S6_modifier_RimK. IPR004666. RpS6_RimK/Lys_biosynth_LsyX. [Graphical view] |
| Gene3D | G3DSA:3.30.1490.20. ATP_grasp_subdomain_1. 1 hit. G3DSA:3.30.470.20. ATP_grasp_subdomain_2. 1 hit. |
| KO | K05844. |
| Pfam | PF08443. RimK. 1 hit. [Graphical view] |
| TIGRFAMs | TIGR00768. RimK_fam. 1 hit. |
| PROSITE | PS50975. ATP_GRASP. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Entry information
| Entry name | RIMK_ECOLI | ||||||||
| Accession | Primary (citable) accession number: P0C0U4 Secondary accession number(s): P17116, P75814 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Prokaryotic Protein Annotation Program | ||||||||
Relevant documents
| Escherichia coli Escherichia coli (strain K12): entries and cross-references to EcoGene |
| SIMILARITY comments Index of protein domains and families |

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