P0C0L1 (APX6_ORYSJ) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Probable L-ascorbate peroxidase 6, chloroplastic
EC=1.11.1.11

Alternative name(s):
OsAPx06

Gene names

Name:	APX6
Ordered Locus Names:	Os12g0178100, LOC_Os12g07820

Organism

Oryza sativa subsp. japonica (Rice)

Taxonomic identifier

39947 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza

Protein attributes

Sequence length	309 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Evidence at transcript level

General annotation (Comments)

Function	Plays a key role in hydrogen peroxide removal By similarity.
Catalytic activity	2 L-ascorbate + H2O2 + 2 H+ = L-ascorbate + L-dehydroascorbate + 2 H2O.
Cofactor	Binds 1 heme B (iron-protoporphyrin IX) group By similarity. Binds 1 potassium or calcium ion per subunit By similarity.
Subcellular location	Plastid › chloroplast stroma Probable.
Sequence similarities	Belongs to the peroxidase family. Ascorbate peroxidase subfamily.

Ontologies

Keywords
Biological process	Hydrogen peroxide
Cellular component	Chloroplast Plastid
Domain	Transit peptide
Ligand	Calcium Heme Iron Metal-binding Potassium
Molecular function	Oxidoreductase Peroxidase
Gene Ontology (GO)
Biological process	hydrogen peroxide catabolic process Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	chloroplast stroma Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	L-ascorbate peroxidase activity Inferred from electronic annotation. Source: EC heme binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Transit peptide	1 – 32	32	Chloroplast Potential
	Chain	33 – 309	277	Probable L-ascorbate peroxidase 6, chloroplastic		PRO_0000042656
Sites
	Active site	69	1	Proton acceptor By similarity
	Metal binding	198	1	Iron (heme axial ligand) By similarity
	Metal binding	199	1	Potassium or calcium By similarity
	Metal binding	231	1	Potassium or calcium By similarity
	Metal binding	238	1	Potassium or calcium By similarity
	Site	65	1	Transition state stabilizer By similarity

Sequences

	Sequence		Length	Mass (Da)
	P0C0L1 [UniParc]. Last modified October 25, 2005. Version 1. Checksum: DB5600BC16FC0984	FASTA	309	33,502
	10 20 30 40 50 60 MAVVHRLLRR GLSAASPLPS LQELGRRPAS SSAAAAGDAA AELRGAREDV KQLLKSTSCH 70 80 90 100 110 120 PILVRLGWHD AGTYDKNITE WPKCGGANGS LRFEIELKHA ANAGLVNALK LIQPIKDKHA 130 140 150 160 170 180 GVTYADLFQL ASATAIEEAG GPKIPMIYGR VDVAAPEQCP PEGRLPAAGP PSPAEHLREV 190 200 210 220 230 240 FYRMGLSDKE IVALSGAHTL GRSRPERSGW GKPETKYTKN GPGAPGGQSW TSQWLKFDNS 250 260 270 280 290 300 YFKDIKERRD EDLLVLPTDA VLFEDSSFKI YAEKYAADQD AFFEDYAEAH AKLSNLGAKF DPPKGISLE

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications." The rice chromosomes 11 and 12 sequencing consortia BMC Biol. 3:20-20(2005) [PubMed: 16188032] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[2]	"The map-based sequence of the rice genome." International rice genome sequencing project (IRGSP) Nature 436:793-800(2005) [PubMed: 16100779] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[3]	"The rice annotation project database (RAP-DB): 2008 update." The rice annotation project (RAP) Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed: 18089549] [Abstract] Cited for: GENOME REANNOTATION. Strain: cv. Nipponbare.
[4]	"Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice." The rice full-length cDNA consortium Science 301:376-379(2003) [PubMed: 12869764] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: cv. Nipponbare.
[5]	"Analysis of the molecular evolutionary history of the ascorbate peroxidase gene family: inferences from the rice genome." Teixeira F.K., Menezes-Benavente L., Margis R., Margis-Pinheiro M. J. Mol. Evol. 59:761-770(2004) [PubMed: 15599508] [Abstract] Cited for: NOMENCLATURE.

Cross-references

Sequence databases
EMBL GenBank DDBJ	DP000011 Genomic DNA. Translation: ABA96617.1. AP008218 Genomic DNA. Translation: BAF29324.1. AK061107 mRNA. Translation: BAG87732.1. AK099201 mRNA. Translation: BAG93994.1.
RefSeq	NP_001066305.1. NM_001072837.1.
UniGene	Os.9266.
3D structure databases
ProteinModelPortal	P0C0L1.
SMR	P0C0L1. Positions 36-309.
ModBase	Search...
Protein-protein interaction databases
STRING	P0C0L1.
Protein family/group databases
PeroxiBase	1870. OsAPx06.
Proteomic databases
PRIDE	P0C0L1.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	LOC_Os12g07820.1; LOC_Os12g07820.1; LOC_Os12g07820.
GeneID	4351663.
KEGG	osa:4351663.
Organism-specific databases
Gramene	P0C0L1.
Phylogenomic databases
GeneTree	EPGT00050000027793.
OMA	DCPEEGR.
PhylomeDB	P0C0L1.
ProtClustDB	CLSN2698780.
Family and domain databases
InterPro	IPR002207. Asc_peroxidase. IPR010255. Haem_peroxidase. IPR002016. Haem_peroxidase_pln/fun/bac. IPR019793. Peroxidases_heam-ligand_BS. [Graphical view]
KO	K00434.
Pfam	PF00141. peroxidase. 1 hit. [Graphical view]
PRINTS	PR00459. ASPEROXIDASE. PR00458. PEROXIDASE.
SUPFAM	SSF48113. Peroxidase_super. 1 hit.
PROSITE	PS00435. PEROXIDASE_1. 1 hit. PS00436. PEROXIDASE_2. False negative. PS50873. PEROXIDASE_4. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

APX6_ORYSJ

Accession

Primary (citable) accession number: P0C0L1
Secondary accession number(s): Q2QWY2

Entry history

Integrated into UniProtKB/Swiss-Prot:	October 25, 2005
Last sequence update:	October 25, 2005
Last modified:	November 16, 2011
This is version 43 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Plant Protein Annotation Program