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P0C0F9

- SODM_XANC8

UniProt

P0C0F9 - SODM_XANC8

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Protein

Superoxide dismutase [Mn]

Gene

sodA

Organism
Xanthomonas campestris pv. campestris (strain 8004)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems.

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.

Cofactori

Binds 1 manganese ion per subunit.By similarity

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi27 – 271ManganeseBy similarity
Metal bindingi81 – 811ManganeseBy similarity
Metal bindingi164 – 1641ManganeseBy similarity
Metal bindingi168 – 1681ManganeseBy similarity

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. superoxide dismutase activity Source: UniProtKB-EC
Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Ligandi

Manganese, Metal-binding

Enzyme and pathway databases

BioCyciXCAM314565:GCQG-1840-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutase [Mn] (EC:1.15.1.1)
Gene namesi
Name:sodA
Synonyms:sod
Ordered Locus Names:XC_1837
OrganismiXanthomonas campestris pv. campestris (strain 8004)
Taxonomic identifieri314565 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
ProteomesiUP000000420: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 203203Superoxide dismutase [Mn]PRO_0000160110Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi314565.XC_1837.

Structurei

3D structure databases

ProteinModelPortaliP0C0F9.
SMRiP0C0F9. Positions 1-201.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0605.
HOGENOMiHOG000013583.
KOiK04564.
OMAiPLPYDYN.
OrthoDBiEOG63NMNT.

Family and domain databases

InterProiIPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view]
PANTHERiPTHR11404. PTHR11404. 1 hit.
PfamiPF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiPS00088. SOD_MN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0C0F9-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAYTLPQLPY AYDALEPNID AQTMEIHHTK HHQTYINNVN AALEGTEYAD
60 70 80 90 100
LPVEELVSKL KSLPENLQGP VRNNGGGHAN HSLFWTVMSP NGGGEPKGEV
110 120 130 140 150
AKAIDKDIGG FEKFKEAFTK AALSRFGSGW AWLSVTPDKK VVVESTANQD
160 170 180 190 200
SPLFEGNTPI LGLDVWEHAY YLKYQNRRPD YIGAFYNVVN WDEVERRYHA

AIA
Length:203
Mass (Da):22,721
Last modified:September 13, 2005 - v1
Checksum:iC2CA1F9FB150C880
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti53 – 531V → I in AAB47971. (PubMed:8810073)Curated
Sequence conflicti88 – 881M → L in AAB47971. (PubMed:8810073)Curated
Sequence conflicti123 – 1231L → V in AAB47971. (PubMed:8810073)Curated
Sequence conflicti141 – 1411V → L in AAB47971. (PubMed:8810073)Curated
Sequence conflicti180 – 1801D → E in AAB47971. (PubMed:8810073)Curated
Sequence conflicti188 – 1881V → A in AAB47971. (PubMed:8810073)Curated
Sequence conflicti192 – 1921D → E in AAB47971. (PubMed:8810073)Curated

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U42464 Genomic DNA. Translation: AAB47971.1.
CP000050 Genomic DNA. Translation: AAY48900.1.
RefSeqiYP_242920.1. NC_007086.1.

Genome annotation databases

EnsemblBacteriaiAAY48900; AAY48900; XC_1837.
GeneIDi3380384.
KEGGixcb:XC_1837.
PATRICi24065155. VBIXanCam24967_1976.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U42464 Genomic DNA. Translation: AAB47971.1 .
CP000050 Genomic DNA. Translation: AAY48900.1 .
RefSeqi YP_242920.1. NC_007086.1.

3D structure databases

ProteinModelPortali P0C0F9.
SMRi P0C0F9. Positions 1-201.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 314565.XC_1837.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAY48900 ; AAY48900 ; XC_1837 .
GeneIDi 3380384.
KEGGi xcb:XC_1837.
PATRICi 24065155. VBIXanCam24967_1976.

Phylogenomic databases

eggNOGi COG0605.
HOGENOMi HOG000013583.
KOi K04564.
OMAi PLPYDYN.
OrthoDBi EOG63NMNT.

Enzyme and pathway databases

BioCyci XCAM314565:GCQG-1840-MONOMER.

Family and domain databases

InterProi IPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view ]
PANTHERi PTHR11404. PTHR11404. 1 hit.
Pfami PF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view ]
PIRSFi PIRSF000349. SODismutase. 1 hit.
PRINTSi PR01703. MNSODISMTASE.
SUPFAMi SSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEi PS00088. SOD_MN. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "A gene for superoxide dismutase from Xanthomonas campestris pv. campestris and its expression during bacterial-plant interactions."
    Smith S.G., Wilson T.J., Dow J.M., Daniels M.J.
    Mol. Plant Microbe Interact. 9:584-593(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris."
    Qian W., Jia Y., Ren S.-X., He Y.-Q., Feng J.-X., Lu L.-F., Sun Q., Ying G., Tang D.-J., Tang H., Wu W., Hao P., Wang L., Jiang B.-L., Zeng S., Gu W.-Y., Lu G., Rong L.
    , Tian Y., Yao Z., Fu G., Chen B., Fang R., Qiang B., Chen Z., Zhao G.-P., Tang J.-L., He C.
    Genome Res. 15:757-767(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 8004.

Entry informationi

Entry nameiSODM_XANC8
AccessioniPrimary (citable) accession number: P0C0F9
Secondary accession number(s): Q4UVM3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 13, 2005
Last sequence update: September 13, 2005
Last modified: October 1, 2014
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3