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P0C0F9 (SODM_XANC8) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 48. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Superoxide dismutase [Mn]
EC=1.15.1.1
Gene names
Name:sodA
Synonyms:sod
Ordered Locus Names:XC_1837
OrganismXanthomonas campestris pv. campestris (strain 8004) [Complete proteome] [HAMAP]
Taxonomic identifier314565 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Xanthomonadales › Xanthomonadaceae › Xanthomonas ›

Protein attributes

Sequence length203 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems.

Catalytic activity

2 superoxide + 2 H+ = O2 + H2O2.

Cofactor

Binds 1 manganese ion per subunit By similarity.

Sequence similarities

Belongs to the iron/manganese superoxide dismutase family.

Ontologies

Keywords
   LigandManganese
Metal-binding
   Molecular functionOxidoreductase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processsuperoxide metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functionmetal ion binding

Inferred from electronic annotation. Source: UniProtKB-KW

superoxide dismutase activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 203203Superoxide dismutase [Mn]
PRO_0000160110

Sites

Metal binding271Manganese By similarity
Metal binding811Manganese By similarity
Metal binding1641Manganese By similarity
Metal binding1681Manganese By similarity

Experimental info

Sequence conflict531V → I in AAB47971. Ref.1
Sequence conflict881M → L in AAB47971. Ref.1
Sequence conflict1231L → V in AAB47971. Ref.1
Sequence conflict1411V → L in AAB47971. Ref.1
Sequence conflict1801D → E in AAB47971. Ref.1
Sequence conflict1881V → A in AAB47971. Ref.1
Sequence conflict1921D → E in AAB47971. Ref.1

Sequences

Sequence LengthMass (Da)Tools
P0C0F9 [UniParc].

Last modified September 13, 2005. Version 1.
Checksum: C2CA1F9FB150C880

FASTA20322,721
        10         20         30         40         50         60 
MAYTLPQLPY AYDALEPNID AQTMEIHHTK HHQTYINNVN AALEGTEYAD LPVEELVSKL 

        70         80         90        100        110        120 
KSLPENLQGP VRNNGGGHAN HSLFWTVMSP NGGGEPKGEV AKAIDKDIGG FEKFKEAFTK 

       130        140        150        160        170        180 
AALSRFGSGW AWLSVTPDKK VVVESTANQD SPLFEGNTPI LGLDVWEHAY YLKYQNRRPD 

       190        200 
YIGAFYNVVN WDEVERRYHA AIA

« Hide

References

« Hide 'large scale' references
[1]"A gene for superoxide dismutase from Xanthomonas campestris pv. campestris and its expression during bacterial-plant interactions."
Smith S.G., Wilson T.J., Dow J.M., Daniels M.J.
Mol. Plant Microbe Interact. 9:584-593(1996) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]"Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris."
Qian W., Jia Y., Ren S.-X., He Y.-Q., Feng J.-X., Lu L.-F., Sun Q., Ying G., Tang D.-J., Tang H., Wu W., Hao P., Wang L., Jiang B.-L., Zeng S., Gu W.-Y., Lu G., Rong L. expand/collapse author list , Tian Y., Yao Z., Fu G., Chen B., Fang R., Qiang B., Chen Z., Zhao G.-P., Tang J.-L., He C.
Genome Res. 15:757-767(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 8004.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		U42464 Genomic DNA. Translation: AAB47971.1.
CP000050 Genomic DNA. Translation: AAY48900.1.
RefSeqYP_242920.1. NC_007086.1.

3D structure databases

ProteinModelPortalP0C0F9.
SMRP0C0F9. Positions 1-201.
ModBaseSearch...

Protein-protein interaction databases

STRING314565.XC_1837.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAY48900; AAY48900; XC_1837.
GeneID3380384.
KEGGxcb:XC_1837.
PATRIC24065155. VBIXanCam24967_1976.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0605.
HOGENOMHOG000013583.
KOK04564.
OMAETMTIHH.
ProtClustDBCLSK451481.

Family and domain databases

InterProIPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view]
PANTHERPTHR11404. PTHR11404. 1 hit.
PfamPF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view]
PIRSFPIRSF000349. SODismutase. 1 hit.
PRINTSPR01703. MNSODISMTASE.
SUPFAMSSF46609. SODismutase. 1 hit.
SSF54719. SODismutase. 1 hit.
PROSITEPS00088. SOD_MN. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameSODM_XANC8
AccessionPrimary (citable) accession number: P0C0F9
Secondary accession number(s): Q4UVM3
Entry history
Integrated into UniProtKB/Swiss-Prot: September 13, 2005
Last sequence update: September 13, 2005
Last modified: May 1, 2013
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

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