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P0C0F9

- SODM_XANC8

UniProt

P0C0F9 - SODM_XANC8

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Protein

Superoxide dismutase [Mn]

Gene
sodA, sod, XC_1837
Organism
Xanthomonas campestris pv. campestris (strain 8004)
Status
Reviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems.

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.

Cofactori

Binds 1 manganese ion per subunit By similarity.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi27 – 271Manganese By similarity
Metal bindingi81 – 811Manganese By similarity
Metal bindingi164 – 1641Manganese By similarity
Metal bindingi168 – 1681Manganese By similarity

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. superoxide dismutase activity Source: UniProtKB-EC
Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Ligandi

Manganese, Metal-binding

Enzyme and pathway databases

BioCyciXCAM314565:GCQG-1840-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutase [Mn] (EC:1.15.1.1)
Gene namesi
Name:sodA
Synonyms:sod
Ordered Locus Names:XC_1837
OrganismiXanthomonas campestris pv. campestris (strain 8004)
Taxonomic identifieri314565 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
ProteomesiUP000000420: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 203203Superoxide dismutase [Mn]PRO_0000160110Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi314565.XC_1837.

Structurei

3D structure databases

ProteinModelPortaliP0C0F9.
SMRiP0C0F9. Positions 1-201.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0605.
HOGENOMiHOG000013583.
KOiK04564.
OMAiPLPYDYN.
OrthoDBiEOG63NMNT.

Family and domain databases

InterProiIPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view]
PANTHERiPTHR11404. PTHR11404. 1 hit.
PfamiPF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiPS00088. SOD_MN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0C0F9-1 [UniParc]FASTAAdd to Basket

« Hide

MAYTLPQLPY AYDALEPNID AQTMEIHHTK HHQTYINNVN AALEGTEYAD    50
LPVEELVSKL KSLPENLQGP VRNNGGGHAN HSLFWTVMSP NGGGEPKGEV 100
AKAIDKDIGG FEKFKEAFTK AALSRFGSGW AWLSVTPDKK VVVESTANQD 150
SPLFEGNTPI LGLDVWEHAY YLKYQNRRPD YIGAFYNVVN WDEVERRYHA 200
AIA 203
Length:203
Mass (Da):22,721
Last modified:September 13, 2005 - v1
Checksum:iC2CA1F9FB150C880
GO

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti53 – 531V → I in AAB47971. 1 Publication
Sequence conflicti88 – 881M → L in AAB47971. 1 Publication
Sequence conflicti123 – 1231L → V in AAB47971. 1 Publication
Sequence conflicti141 – 1411V → L in AAB47971. 1 Publication
Sequence conflicti180 – 1801D → E in AAB47971. 1 Publication
Sequence conflicti188 – 1881V → A in AAB47971. 1 Publication
Sequence conflicti192 – 1921D → E in AAB47971. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U42464 Genomic DNA. Translation: AAB47971.1.
CP000050 Genomic DNA. Translation: AAY48900.1.
RefSeqiYP_242920.1. NC_007086.1.

Genome annotation databases

EnsemblBacteriaiAAY48900; AAY48900; XC_1837.
GeneIDi3380384.
KEGGixcb:XC_1837.
PATRICi24065155. VBIXanCam24967_1976.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U42464 Genomic DNA. Translation: AAB47971.1 .
CP000050 Genomic DNA. Translation: AAY48900.1 .
RefSeqi YP_242920.1. NC_007086.1.

3D structure databases

ProteinModelPortali P0C0F9.
SMRi P0C0F9. Positions 1-201.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 314565.XC_1837.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAY48900 ; AAY48900 ; XC_1837 .
GeneIDi 3380384.
KEGGi xcb:XC_1837.
PATRICi 24065155. VBIXanCam24967_1976.

Phylogenomic databases

eggNOGi COG0605.
HOGENOMi HOG000013583.
KOi K04564.
OMAi PLPYDYN.
OrthoDBi EOG63NMNT.

Enzyme and pathway databases

BioCyci XCAM314565:GCQG-1840-MONOMER.

Family and domain databases

InterProi IPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view ]
PANTHERi PTHR11404. PTHR11404. 1 hit.
Pfami PF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view ]
PIRSFi PIRSF000349. SODismutase. 1 hit.
PRINTSi PR01703. MNSODISMTASE.
SUPFAMi SSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEi PS00088. SOD_MN. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "A gene for superoxide dismutase from Xanthomonas campestris pv. campestris and its expression during bacterial-plant interactions."
    Smith S.G., Wilson T.J., Dow J.M., Daniels M.J.
    Mol. Plant Microbe Interact. 9:584-593(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris."
    Qian W., Jia Y., Ren S.-X., He Y.-Q., Feng J.-X., Lu L.-F., Sun Q., Ying G., Tang D.-J., Tang H., Wu W., Hao P., Wang L., Jiang B.-L., Zeng S., Gu W.-Y., Lu G., Rong L.
    , Tian Y., Yao Z., Fu G., Chen B., Fang R., Qiang B., Chen Z., Zhao G.-P., Tang J.-L., He C.
    Genome Res. 15:757-767(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 8004.

Entry informationi

Entry nameiSODM_XANC8
AccessioniPrimary (citable) accession number: P0C0F9
Secondary accession number(s): Q4UVM3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 13, 2005
Last sequence update: September 13, 2005
Last modified: July 9, 2014
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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