ID YHBY_ECOLI Reviewed; 97 AA. AC P0AGK4; P42550; Q2M932; DT 20-DEC-2005, integrated into UniProtKB/Swiss-Prot. DT 20-DEC-2005, sequence version 1. DT 27-MAR-2024, entry version 133. DE RecName: Full=RNA-binding protein YhbY; GN Name=yhbY; OrderedLocusNames=b3180, JW3147; OS Escherichia coli (strain K12). OC Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; OC Enterobacteriaceae; Escherichia. OX NCBI_TaxID=83333; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=K12; RA Wang R., Kushner S.R.; RT "Identification and physical analysis of new genes in the argG region (69 RT min) of Escherichia coli chromosome."; RL Submitted (SEP-1993) to the EMBL/GenBank/DDBJ databases. RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=K12 / MG1655 / ATCC 47076; RX PubMed=9278503; DOI=10.1126/science.277.5331.1453; RA Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., RA Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., RA Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., RA Shao Y.; RT "The complete genome sequence of Escherichia coli K-12."; RL Science 277:1453-1462(1997). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911; RX PubMed=16738553; DOI=10.1038/msb4100049; RA Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., RA Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.; RT "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 RT and W3110."; RL Mol. Syst. Biol. 2:E1-E5(2006). RN [4] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 64-97. RX PubMed=2243801; DOI=10.1093/nar/18.21.6443; RA Sparkowski J., Das A.; RT "The nucleotide sequence of greA, a suppressor gene that restores growth of RT an Escherichia coli RNA polymerase mutant at high temperature."; RL Nucleic Acids Res. 18:6443-6443(1990). RN [5] RP IDENTIFICATION BY MASS SPECTROMETRY, SUBCELLULAR LOCATION, AND ASSOCIATION RP WITH THE 50S RIBOSOMAL SUBUNIT. RC STRAIN=K12 / MG1655 / ATCC 47076; RX PubMed=16980477; DOI=10.1128/jb.00444-06; RA Jiang M., Datta K., Walker A., Strahler J., Bagamasbad P., Andrews P.C., RA Maddock J.R.; RT "The Escherichia coli GTPase CgtAE is involved in late steps of large RT ribosome assembly."; RL J. Bacteriol. 188:6757-6770(2006). RN [6] RP X-RAY CRYSTALLOGRAPHY (1.5 ANGSTROMS) OF 5-104. RX PubMed=12429100; DOI=10.1016/s0969-2126(02)00886-9; RA Ostheimer G.J., Barkan A., Matthews B.W.; RT "Crystal structure of E. coli YhbY: a representative of a novel class of RT RNA binding proteins."; RL Structure 10:1593-1601(2002). CC -!- INTERACTION: CC P0AGK4; P0AG30: rho; NbExp=3; IntAct=EBI-543346, EBI-545468; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000269|PubMed:16980477}. Note=Has CC been seen to comigrate with the 50S ribosomal subunit in sucrose CC gradients. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; U01376; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; U18997; AAA57981.1; -; Genomic_DNA. DR EMBL; U00096; AAC76212.1; -; Genomic_DNA. DR EMBL; AP009048; BAE77224.1; -; Genomic_DNA. DR EMBL; X54718; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR PIR; F65108; F65108. DR RefSeq; NP_417647.1; NC_000913.3. DR RefSeq; WP_001054420.1; NZ_STEB01000012.1. DR PDB; 1LN4; X-ray; 1.50 A; A=3-97. DR PDBsum; 1LN4; -. DR AlphaFoldDB; P0AGK4; -. DR SMR; P0AGK4; -. DR BioGRID; 4261795; 34. DR BioGRID; 852001; 1. DR DIP; DIP-47893N; -. DR IntAct; P0AGK4; 44. DR STRING; 511145.b3180; -. DR jPOST; P0AGK4; -. DR PaxDb; 511145-b3180; -. DR EnsemblBacteria; AAC76212; AAC76212; b3180. DR GeneID; 83578149; -. DR GeneID; 947688; -. DR KEGG; ecj:JW3147; -. DR KEGG; eco:b3180; -. DR PATRIC; fig|1411691.4.peg.3552; -. DR EchoBASE; EB2646; -. DR eggNOG; COG1534; Bacteria. DR HOGENOM; CLU_095994_2_0_6; -. DR InParanoid; P0AGK4; -. DR OMA; FQVGKNG; -. DR OrthoDB; 9797519at2; -. DR PhylomeDB; P0AGK4; -. DR BioCyc; EcoCyc:EG12794-MONOMER; -. DR EvolutionaryTrace; P0AGK4; -. DR PRO; PR:P0AGK4; -. DR Proteomes; UP000000318; Chromosome. DR Proteomes; UP000000625; Chromosome. DR GO; GO:0005829; C:cytosol; IDA:EcoCyc. DR GO; GO:1990275; F:preribosome binding; IDA:EcoCyc. DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW. DR GO; GO:0000028; P:ribosomal small subunit assembly; IMP:EcoCyc. DR GO; GO:0000967; P:rRNA 5'-end processing; IMP:EcoCyc. DR Gene3D; 3.30.110.60; YhbY-like; 1. DR InterPro; IPR001890; RNA-binding_CRM. DR InterPro; IPR017924; RNA-binding_YhbY. DR InterPro; IPR035920; YhbY-like_sf. DR NCBIfam; TIGR00253; RNA_bind_YhbY; 1. DR PANTHER; PTHR40065; RNA-BINDING PROTEIN YHBY; 1. DR PANTHER; PTHR40065:SF3; RNA-BINDING PROTEIN YHBY; 1. DR Pfam; PF01985; CRS1_YhbY; 1. DR SMART; SM01103; CRS1_YhbY; 1. DR SUPFAM; SSF75471; YhbY-like; 1. DR PROSITE; PS51295; CRM; 1. PE 1: Evidence at protein level; KW 3D-structure; Cytoplasm; Reference proteome; RNA-binding. FT CHAIN 1..97 FT /note="RNA-binding protein YhbY" FT /id="PRO_0000202163" FT DOMAIN 1..97 FT /note="CRM" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00626" FT HELIX 5..15 FT /evidence="ECO:0007829|PDB:1LN4" FT STRAND 21..24 FT /evidence="ECO:0007829|PDB:1LN4" FT HELIX 31..44 FT /evidence="ECO:0007829|PDB:1LN4" FT STRAND 45..51 FT /evidence="ECO:0007829|PDB:1LN4" FT HELIX 56..70 FT /evidence="ECO:0007829|PDB:1LN4" FT STRAND 73..78 FT /evidence="ECO:0007829|PDB:1LN4" FT STRAND 81..85 FT /evidence="ECO:0007829|PDB:1LN4" SQ SEQUENCE 97 AA; 10784 MW; 52B4F7AD4C203382 CRC64; MNLSTKQKQH LKGLAHPLKP VVLLGSNGLT EGVLAEIEQA LEHHELIKVK IATEDRETKT LIVEAIVRET GACNVQVIGK TLVLYRPTKE RKISLPR //