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Protein

RNA-binding protein YhbY

Gene

yhbY

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Keywordsi

Molecular functionRNA-binding

Enzyme and pathway databases

BioCyciEcoCyc:EG12794-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
RNA-binding protein YhbY
Gene namesi
Name:yhbY
Ordered Locus Names:b3180, JW3147
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12794. yhbY.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002021631 – 97RNA-binding protein YhbYAdd BLAST97

Proteomic databases

EPDiP0AGK4.
PaxDbiP0AGK4.
PRIDEiP0AGK4.

Interactioni

Protein-protein interaction databases

BioGridi4261795. 30 interactors.
DIPiDIP-47893N.
IntActiP0AGK4. 39 interactors.
MINTiMINT-1224994.
STRINGi511145.b3180.

Structurei

Secondary structure

197
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi5 – 15Combined sources11
Beta strandi21 – 24Combined sources4
Helixi31 – 44Combined sources14
Beta strandi45 – 51Combined sources7
Helixi56 – 70Combined sources15
Beta strandi73 – 78Combined sources6
Beta strandi81 – 85Combined sources5

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1LN4X-ray1.50A3-97[»]
ProteinModelPortaliP0AGK4.
SMRiP0AGK4.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP0AGK4.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 97CRMPROSITE-ProRule annotationAdd BLAST97

Phylogenomic databases

eggNOGiENOG4105HBR. Bacteria.
COG1534. LUCA.
HOGENOMiHOG000016279.
InParanoidiP0AGK4.
KOiK07574.
OMAiLSPIFQV.
PhylomeDBiP0AGK4.

Family and domain databases

Gene3Di3.30.110.60. 1 hit.
InterProiView protein in InterPro
IPR001890. RNA-binding_CRM.
IPR017924. RNA-binding_YhbY.
PfamiView protein in Pfam
PF01985. CRS1_YhbY. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD010559. RNA-binding_CRM. 1 hit.
SMARTiView protein in SMART
SM01103. CRS1_YhbY. 1 hit.
SUPFAMiSSF75471. SSF75471. 1 hit.
TIGRFAMsiTIGR00253. RNA_bind_YhbY. 1 hit.
PROSITEiView protein in PROSITE
PS51295. CRM. 1 hit.

Sequencei

Sequence statusi: Complete.

P0AGK4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNLSTKQKQH LKGLAHPLKP VVLLGSNGLT EGVLAEIEQA LEHHELIKVK
60 70 80 90
IATEDRETKT LIVEAIVRET GACNVQVIGK TLVLYRPTKE RKISLPR
Length:97
Mass (Da):10,784
Last modified:December 20, 2005 - v1
Checksum:i52B4F7AD4C203382
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U01376 Genomic DNA. No translation available.
U18997 Genomic DNA. Translation: AAA57981.1.
U00096 Genomic DNA. Translation: AAC76212.1.
AP009048 Genomic DNA. Translation: BAE77224.1.
X54718 Genomic DNA. No translation available.
PIRiF65108.
RefSeqiNP_417647.1. NC_000913.3.
WP_001054420.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76212; AAC76212; b3180.
BAE77224; BAE77224; BAE77224.
GeneIDi947688.
KEGGiecj:JW3147.
eco:b3180.
PATRICi32121778. VBIEscCol129921_3273.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U01376 Genomic DNA. No translation available.
U18997 Genomic DNA. Translation: AAA57981.1.
U00096 Genomic DNA. Translation: AAC76212.1.
AP009048 Genomic DNA. Translation: BAE77224.1.
X54718 Genomic DNA. No translation available.
PIRiF65108.
RefSeqiNP_417647.1. NC_000913.3.
WP_001054420.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1LN4X-ray1.50A3-97[»]
ProteinModelPortaliP0AGK4.
SMRiP0AGK4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261795. 30 interactors.
DIPiDIP-47893N.
IntActiP0AGK4. 39 interactors.
MINTiMINT-1224994.
STRINGi511145.b3180.

Proteomic databases

EPDiP0AGK4.
PaxDbiP0AGK4.
PRIDEiP0AGK4.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76212; AAC76212; b3180.
BAE77224; BAE77224; BAE77224.
GeneIDi947688.
KEGGiecj:JW3147.
eco:b3180.
PATRICi32121778. VBIEscCol129921_3273.

Organism-specific databases

EchoBASEiEB2646.
EcoGeneiEG12794. yhbY.

Phylogenomic databases

eggNOGiENOG4105HBR. Bacteria.
COG1534. LUCA.
HOGENOMiHOG000016279.
InParanoidiP0AGK4.
KOiK07574.
OMAiLSPIFQV.
PhylomeDBiP0AGK4.

Enzyme and pathway databases

BioCyciEcoCyc:EG12794-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP0AGK4.
PROiP0AGK4.

Family and domain databases

Gene3Di3.30.110.60. 1 hit.
InterProiView protein in InterPro
IPR001890. RNA-binding_CRM.
IPR017924. RNA-binding_YhbY.
PfamiView protein in Pfam
PF01985. CRS1_YhbY. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD010559. RNA-binding_CRM. 1 hit.
SMARTiView protein in SMART
SM01103. CRS1_YhbY. 1 hit.
SUPFAMiSSF75471. SSF75471. 1 hit.
TIGRFAMsiTIGR00253. RNA_bind_YhbY. 1 hit.
PROSITEiView protein in PROSITE
PS51295. CRM. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYHBY_ECOLI
AccessioniPrimary (citable) accession number: P0AGK4
Secondary accession number(s): P42550, Q2M932
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 20, 2005
Last sequence update: December 20, 2005
Last modified: February 15, 2017
This is version 95 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.