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Protein

RNA-binding protein YhbY

Gene

yhbY

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

RNA-binding

Enzyme and pathway databases

BioCyciEcoCyc:EG12794-MONOMER.
ECOL316407:JW3147-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
RNA-binding protein YhbY
Gene namesi
Name:yhbY
Ordered Locus Names:b3180, JW3147
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12794. yhbY.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 9797RNA-binding protein YhbYPRO_0000202163Add
BLAST

Proteomic databases

EPDiP0AGK4.
PaxDbiP0AGK4.
PRIDEiP0AGK4.

Interactioni

Protein-protein interaction databases

BioGridi4261795. 3 interactions.
DIPiDIP-47893N.
IntActiP0AGK4. 39 interactions.
MINTiMINT-1224994.
STRINGi511145.b3180.

Structurei

Secondary structure

1
97
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi5 – 1511Combined sources
Beta strandi21 – 244Combined sources
Helixi31 – 4414Combined sources
Beta strandi45 – 517Combined sources
Helixi56 – 7015Combined sources
Beta strandi73 – 786Combined sources
Beta strandi81 – 855Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1LN4X-ray1.50A3-97[»]
ProteinModelPortaliP0AGK4.
SMRiP0AGK4. Positions 1-96.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP0AGK4.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1 – 9797CRMPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 CRM domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4105HBR. Bacteria.
COG1534. LUCA.
HOGENOMiHOG000016279.
InParanoidiP0AGK4.
KOiK07574.
OMAiLSPIFQV.
PhylomeDBiP0AGK4.

Family and domain databases

Gene3Di3.30.110.60. 1 hit.
InterProiIPR001890. RNA-binding_CRM.
IPR017924. RNA-binding_YhbY.
[Graphical view]
PfamiPF01985. CRS1_YhbY. 1 hit.
[Graphical view]
ProDomiPD010559. RNA-binding_CRM. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM01103. CRS1_YhbY. 1 hit.
[Graphical view]
SUPFAMiSSF75471. SSF75471. 1 hit.
TIGRFAMsiTIGR00253. RNA_bind_YhbY. 1 hit.
PROSITEiPS51295. CRM. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0AGK4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNLSTKQKQH LKGLAHPLKP VVLLGSNGLT EGVLAEIEQA LEHHELIKVK
60 70 80 90
IATEDRETKT LIVEAIVRET GACNVQVIGK TLVLYRPTKE RKISLPR
Length:97
Mass (Da):10,784
Last modified:December 20, 2005 - v1
Checksum:i52B4F7AD4C203382
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U01376 Genomic DNA. No translation available.
U18997 Genomic DNA. Translation: AAA57981.1.
U00096 Genomic DNA. Translation: AAC76212.1.
AP009048 Genomic DNA. Translation: BAE77224.1.
X54718 Genomic DNA. No translation available.
PIRiF65108.
RefSeqiNP_417647.1. NC_000913.3.
WP_001054420.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76212; AAC76212; b3180.
BAE77224; BAE77224; BAE77224.
GeneIDi947688.
KEGGiecj:JW3147.
eco:b3180.
PATRICi32121778. VBIEscCol129921_3273.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U01376 Genomic DNA. No translation available.
U18997 Genomic DNA. Translation: AAA57981.1.
U00096 Genomic DNA. Translation: AAC76212.1.
AP009048 Genomic DNA. Translation: BAE77224.1.
X54718 Genomic DNA. No translation available.
PIRiF65108.
RefSeqiNP_417647.1. NC_000913.3.
WP_001054420.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1LN4X-ray1.50A3-97[»]
ProteinModelPortaliP0AGK4.
SMRiP0AGK4. Positions 1-96.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261795. 3 interactions.
DIPiDIP-47893N.
IntActiP0AGK4. 39 interactions.
MINTiMINT-1224994.
STRINGi511145.b3180.

Proteomic databases

EPDiP0AGK4.
PaxDbiP0AGK4.
PRIDEiP0AGK4.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76212; AAC76212; b3180.
BAE77224; BAE77224; BAE77224.
GeneIDi947688.
KEGGiecj:JW3147.
eco:b3180.
PATRICi32121778. VBIEscCol129921_3273.

Organism-specific databases

EchoBASEiEB2646.
EcoGeneiEG12794. yhbY.

Phylogenomic databases

eggNOGiENOG4105HBR. Bacteria.
COG1534. LUCA.
HOGENOMiHOG000016279.
InParanoidiP0AGK4.
KOiK07574.
OMAiLSPIFQV.
PhylomeDBiP0AGK4.

Enzyme and pathway databases

BioCyciEcoCyc:EG12794-MONOMER.
ECOL316407:JW3147-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP0AGK4.
PROiP0AGK4.

Family and domain databases

Gene3Di3.30.110.60. 1 hit.
InterProiIPR001890. RNA-binding_CRM.
IPR017924. RNA-binding_YhbY.
[Graphical view]
PfamiPF01985. CRS1_YhbY. 1 hit.
[Graphical view]
ProDomiPD010559. RNA-binding_CRM. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM01103. CRS1_YhbY. 1 hit.
[Graphical view]
SUPFAMiSSF75471. SSF75471. 1 hit.
TIGRFAMsiTIGR00253. RNA_bind_YhbY. 1 hit.
PROSITEiPS51295. CRM. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYHBY_ECOLI
AccessioniPrimary (citable) accession number: P0AGK4
Secondary accession number(s): P42550, Q2M932
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 20, 2005
Last sequence update: December 20, 2005
Last modified: September 7, 2016
This is version 92 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families
  4. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.