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Protein

Peptide transport system permease protein SapB

Gene

sapB

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Involved in a peptide intake transport system that plays a role in the resistance to antimicrobial peptides.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Peptide transport, Protein transport, Transport

Enzyme and pathway databases

BioCyciEcoCyc:SAPB-MONOMER.
ECOL316407:JW1286-MONOMER.

Protein family/group databases

TCDBi3.A.1.5.42. the atp-binding cassette (abc) superfamily.

Names & Taxonomyi

Protein namesi
Recommended name:
Peptide transport system permease protein SapB
Gene namesi
Name:sapB
Ordered Locus Names:b1293, JW1286
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG20255. sapB.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 88CytoplasmicSequence analysis
Transmembranei9 – 2921HelicalPROSITE-ProRule annotationAdd
BLAST
Topological domaini30 – 8051PeriplasmicSequence analysisAdd
BLAST
Transmembranei81 – 10121HelicalPROSITE-ProRule annotationAdd
BLAST
Topological domaini102 – 11211CytoplasmicSequence analysisAdd
BLAST
Transmembranei113 – 13321HelicalPROSITE-ProRule annotationAdd
BLAST
Topological domaini134 – 17441PeriplasmicSequence analysisAdd
BLAST
Transmembranei175 – 19521HelicalPROSITE-ProRule annotationAdd
BLAST
Topological domaini196 – 24853CytoplasmicSequence analysisAdd
BLAST
Transmembranei249 – 26921HelicalPROSITE-ProRule annotationAdd
BLAST
Topological domaini270 – 28011PeriplasmicSequence analysisAdd
BLAST
Transmembranei281 – 30121HelicalPROSITE-ProRule annotationAdd
BLAST
Topological domaini302 – 32120CytoplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of plasma membrane Source: GO_Central
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 321321Peptide transport system permease protein SapBPRO_0000060158Add
BLAST

Proteomic databases

PaxDbiP0AGH3.

Interactioni

Protein-protein interaction databases

BioGridi4260136. 255 interactions.
STRINGi511145.b1293.

Structurei

3D structure databases

ProteinModelPortaliP0AGH3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini74 – 302229ABC transmembrane type-1PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 ABC transmembrane type-1 domain.PROSITE-ProRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4108I5W. Bacteria.
COG4168. LUCA.
HOGENOMiHOG000170242.
InParanoidiP0AGH3.
KOiK19227.
OMAiMAIQITT.
OrthoDBiEOG66F098.
PhylomeDBiP0AGH3.

Family and domain databases

Gene3Di1.10.3720.10. 2 hits.
InterProiIPR000515. MetI-like.
[Graphical view]
PfamiPF00528. BPD_transp_1. 1 hit.
[Graphical view]
SUPFAMiSSF161098. SSF161098. 2 hits.
PROSITEiPS50928. ABC_TM1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0AGH3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIIFTLRRIL LLIVTLFLLT FVGFSLSYFT PHAPLQGASL WNAWVFWFNG
60 70 80 90 100
LIHWDFGVSS INGQPIAEQL KEVFPATMEL CILAFGFALI VGIPVGMIAG
110 120 130 140 150
ITRHKWQDNL INAIALLGFS IPVFWLALLL TLFCSLTLGW LPVSGRFDLL
160 170 180 190 200
YEVKPITGFA LIDAWLSDSP WRDEMIMSAI RHMILPVITL SVAPTTEVIR
210 220 230 240 250
LMRISTIEVY DQNYVKAAAT RGLSRFTILR RHVLHNALPP VIPRLGLQFS
260 270 280 290 300
TMLTLAMITE MVFSWPGLGR WLINAIRQQD YAAISAGVMV CGSLVIIVNV
310 320
ISDILGAMAN PLKHKEWYAL R
Length:321
Mass (Da):36,038
Last modified:December 20, 2005 - v1
Checksum:iE50607A4A2C551F2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X97282 Genomic DNA. Translation: CAA65938.1.
U00096 Genomic DNA. Translation: AAC74375.1.
AP009048 Genomic DNA. Translation: BAA14854.1.
PIRiH64877.
RefSeqiNP_415809.1. NC_000913.3.
WP_000583277.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74375; AAC74375; b1293.
BAA14854; BAA14854; BAA14854.
GeneIDi946191.
KEGGiecj:JW1286.
eco:b1293.
PATRICi32117856. VBIEscCol129921_1348.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X97282 Genomic DNA. Translation: CAA65938.1.
U00096 Genomic DNA. Translation: AAC74375.1.
AP009048 Genomic DNA. Translation: BAA14854.1.
PIRiH64877.
RefSeqiNP_415809.1. NC_000913.3.
WP_000583277.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0AGH3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260136. 255 interactions.
STRINGi511145.b1293.

Protein family/group databases

TCDBi3.A.1.5.42. the atp-binding cassette (abc) superfamily.

Proteomic databases

PaxDbiP0AGH3.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74375; AAC74375; b1293.
BAA14854; BAA14854; BAA14854.
GeneIDi946191.
KEGGiecj:JW1286.
eco:b1293.
PATRICi32117856. VBIEscCol129921_1348.

Organism-specific databases

EchoBASEiEB4156.
EcoGeneiEG20255. sapB.

Phylogenomic databases

eggNOGiENOG4108I5W. Bacteria.
COG4168. LUCA.
HOGENOMiHOG000170242.
InParanoidiP0AGH3.
KOiK19227.
OMAiMAIQITT.
OrthoDBiEOG66F098.
PhylomeDBiP0AGH3.

Enzyme and pathway databases

BioCyciEcoCyc:SAPB-MONOMER.
ECOL316407:JW1286-MONOMER.

Miscellaneous databases

PROiP0AGH3.

Family and domain databases

Gene3Di1.10.3720.10. 2 hits.
InterProiIPR000515. MetI-like.
[Graphical view]
PfamiPF00528. BPD_transp_1. 1 hit.
[Graphical view]
SUPFAMiSSF161098. SSF161098. 2 hits.
PROSITEiPS50928. ABC_TM1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Epstein W., Noelker E., Stumpe S., Tewes R., Schmid R., Bakker E.P.
    Submitted (APR-1996) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: K12 / FRAG5.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  5. "Global topology analysis of the Escherichia coli inner membrane proteome."
    Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.
    Science 308:1321-1323(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: TOPOLOGY [LARGE SCALE ANALYSIS].
    Strain: K12 / MG1655 / ATCC 47076.

Entry informationi

Entry nameiSAPB_ECOLI
AccessioniPrimary (citable) accession number: P0AGH3
Secondary accession number(s): P76838, Q47623
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 20, 2005
Last sequence update: December 20, 2005
Last modified: February 17, 2016
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.