Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

sn-glycerol-3-phosphate-binding periplasmic protein UgpB

Gene

ugpB

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

sn-glycerol-3-phosphate and glycerophosphoryl diester-binding protein interacts with the binding protein-dependent transport system UgpACE.

GO - Molecular functioni

GO - Biological processi

  • glycerol-3-phosphate transport Source: EcoCyc
  • glycerophosphodiester transport Source: EcoCyc
Complete GO annotation...

Keywords - Biological processi

Transport

Enzyme and pathway databases

BioCyciEcoCyc:UGPB-MONOMER.
ECOL316407:JW3418-MONOMER.
MetaCyc:UGPB-MONOMER.

Protein family/group databases

TCDBi3.A.1.1.3. the atp-binding cassette (abc) superfamily.

Names & Taxonomyi

Protein namesi
Recommended name:
sn-glycerol-3-phosphate-binding periplasmic protein UgpB
Gene namesi
Name:ugpB
Ordered Locus Names:b3453, JW3418
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11047. ugpB.

Subcellular locationi

GO - Cellular componenti

  • outer membrane-bounded periplasmic space Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Periplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 23Add BLAST23
ChainiPRO_000003170724 – 438sn-glycerol-3-phosphate-binding periplasmic protein UgpBAdd BLAST415

Proteomic databases

EPDiP0AG80.
PaxDbiP0AG80.
PRIDEiP0AG80.

Interactioni

Subunit structurei

The complex is composed of two ATP-binding proteins (UgpC), two transmembrane proteins (UgpA and UgpE) and a solute-binding protein (UgpB).Curated

Protein-protein interaction databases

BioGridi4261118. 154 interactors.
DIPiDIP-35942N.
IntActiP0AG80. 15 interactors.
MINTiMINT-1291422.
STRINGi511145.b3453.

Structurei

Secondary structure

1438
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi25 – 31Combined sources7
Helixi36 – 51Combined sources16
Beta strandi55 – 61Combined sources7
Helixi65 – 77Combined sources13
Beta strandi83 – 88Combined sources6
Helixi89 – 91Combined sources3
Helixi92 – 96Combined sources5
Helixi104 – 111Combined sources8
Helixi117 – 119Combined sources3
Helixi122 – 127Combined sources6
Turni131 – 133Combined sources3
Beta strandi136 – 144Combined sources9
Beta strandi146 – 151Combined sources6
Helixi152 – 157Combined sources6
Helixi169 – 181Combined sources13
Beta strandi185 – 192Combined sources8
Helixi193 – 197Combined sources5
Helixi199 – 204Combined sources6
Helixi211 – 214Combined sources4
Turni215 – 217Combined sources3
Helixi228 – 243Combined sources16
Beta strandi251 – 253Combined sources3
Helixi254 – 260Combined sources7
Beta strandi263 – 270Combined sources8
Helixi271 – 273Combined sources3
Helixi274 – 280Combined sources7
Beta strandi285 – 289Combined sources5
Beta strandi306 – 315Combined sources10
Helixi318 – 331Combined sources14
Helixi334 – 344Combined sources11
Helixi351 – 359Combined sources9
Helixi362 – 365Combined sources4
Helixi367 – 370Combined sources4
Helixi371 – 376Combined sources6
Helixi393 – 408Combined sources16
Helixi414 – 435Combined sources22

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4AQ4X-ray1.80A24-438[»]
ProteinModelPortaliP0AG80.
SMRiP0AG80.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4105BZ7. Bacteria.
COG1653. LUCA.
HOGENOMiHOG000255083.
InParanoidiP0AG80.
KOiK05813.
OMAiESFSAWH.
PhylomeDBiP0AG80.

Family and domain databases

InterProiIPR006061. SBP_1_CS.
[Graphical view]
PROSITEiPS01037. SBP_BACTERIAL_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P0AG80-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKPLHYTASA LALGLALMGN AQAVTTIPFW HSMEGELGKE VDSLAQRFNA
60 70 80 90 100
ENPDYKIVPT YKGNYEQNLS AGIAAFRTGN APAILQVYEV GTATMMASKA
110 120 130 140 150
IKPVYDVFKE AGIQFDESQF VPTVSGYYSD SKTGHLLSQP FNSSTPVLYY
160 170 180 190 200
NKDAFKKAGL DPEQPPKTWQ DLADYAAKLK ASGMKCGYAS GWQGWIQLEN
210 220 230 240 250
FSAWNGLPFA SKNNGFDGTD AVLEFNKPEQ VKHIAMLEEM NKKGDFSYVG
260 270 280 290 300
RKDESTEKFY NGDCAMTTAS SGSLANIREY AKFNYGVGMM PYDADAKDAP
310 320 330 340 350
QNAIIGGASL WVMQGKDKET YTGVAKFLDF LAKPENAAEW HQKTGYLPIT
360 370 380 390 400
KAAYDLTREQ GFYEKNPGAD TATRQMLNKP PLPFTKGLRL GNMPQIRVIV
410 420 430
DEELESVWTG KKTPQQALDT AVERGNQLLR RFEKSTKS
Length:438
Mass (Da):48,449
Last modified:December 20, 2005 - v1
Checksum:iE0B9B5885B240C8D
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti334P → T in CAA31531 (PubMed:3062310).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X13141 Genomic DNA. Translation: CAA31531.1.
U00039 Genomic DNA. Translation: AAB18428.1.
U00096 Genomic DNA. Translation: AAC76478.1.
AP009048 Genomic DNA. Translation: BAE77840.1.
PIRiS47672. JGECGP.
RefSeqiNP_417910.1. NC_000913.3.
WP_000803190.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76478; AAC76478; b3453.
BAE77840; BAE77840; BAE77840.
GeneIDi947962.
KEGGiecj:JW3418.
eco:b3453.
PATRICi32122346. VBIEscCol129921_3550.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X13141 Genomic DNA. Translation: CAA31531.1.
U00039 Genomic DNA. Translation: AAB18428.1.
U00096 Genomic DNA. Translation: AAC76478.1.
AP009048 Genomic DNA. Translation: BAE77840.1.
PIRiS47672. JGECGP.
RefSeqiNP_417910.1. NC_000913.3.
WP_000803190.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4AQ4X-ray1.80A24-438[»]
ProteinModelPortaliP0AG80.
SMRiP0AG80.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261118. 154 interactors.
DIPiDIP-35942N.
IntActiP0AG80. 15 interactors.
MINTiMINT-1291422.
STRINGi511145.b3453.

Protein family/group databases

TCDBi3.A.1.1.3. the atp-binding cassette (abc) superfamily.

Proteomic databases

EPDiP0AG80.
PaxDbiP0AG80.
PRIDEiP0AG80.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76478; AAC76478; b3453.
BAE77840; BAE77840; BAE77840.
GeneIDi947962.
KEGGiecj:JW3418.
eco:b3453.
PATRICi32122346. VBIEscCol129921_3550.

Organism-specific databases

EchoBASEiEB1040.
EcoGeneiEG11047. ugpB.

Phylogenomic databases

eggNOGiENOG4105BZ7. Bacteria.
COG1653. LUCA.
HOGENOMiHOG000255083.
InParanoidiP0AG80.
KOiK05813.
OMAiESFSAWH.
PhylomeDBiP0AG80.

Enzyme and pathway databases

BioCyciEcoCyc:UGPB-MONOMER.
ECOL316407:JW3418-MONOMER.
MetaCyc:UGPB-MONOMER.

Miscellaneous databases

PROiP0AG80.

Family and domain databases

InterProiIPR006061. SBP_1_CS.
[Graphical view]
PROSITEiPS01037. SBP_BACTERIAL_1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiUGPB_ECOLI
AccessioniPrimary (citable) accession number: P0AG80
Secondary accession number(s): P10904, Q2M7B6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 20, 2005
Last sequence update: December 20, 2005
Last modified: November 2, 2016
This is version 90 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.