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Protein

sn-glycerol-3-phosphate-binding periplasmic protein UgpB

Gene

ugpB

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

sn-glycerol-3-phosphate and glycerophosphoryl diester-binding protein interacts with the binding protein-dependent transport system UgpACE.

GO - Molecular functioni

GO - Biological processi

  • glycerol-3-phosphate transport Source: EcoCyc
  • glycerophosphodiester transport Source: EcoCyc
Complete GO annotation...

Keywords - Biological processi

Transport

Enzyme and pathway databases

BioCyciEcoCyc:UGPB-MONOMER.
ECOL316407:JW3418-MONOMER.
MetaCyc:UGPB-MONOMER.

Protein family/group databases

TCDBi3.A.1.1.3. the atp-binding cassette (abc) superfamily.

Names & Taxonomyi

Protein namesi
Recommended name:
sn-glycerol-3-phosphate-binding periplasmic protein UgpB
Gene namesi
Name:ugpB
Ordered Locus Names:b3453, JW3418
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11047. ugpB.

Subcellular locationi

GO - Cellular componenti

  • outer membrane-bounded periplasmic space Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Periplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2323Add
BLAST
Chaini24 – 438415sn-glycerol-3-phosphate-binding periplasmic protein UgpBPRO_0000031707Add
BLAST

Proteomic databases

EPDiP0AG80.
PaxDbiP0AG80.
PRIDEiP0AG80.

Interactioni

Subunit structurei

The complex is composed of two ATP-binding proteins (UgpC), two transmembrane proteins (UgpA and UgpE) and a solute-binding protein (UgpB).Curated

Protein-protein interaction databases

BioGridi4261118. 154 interactions.
DIPiDIP-35942N.
IntActiP0AG80. 15 interactions.
MINTiMINT-1291422.
STRINGi511145.b3453.

Structurei

Secondary structure

1
438
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi25 – 317Combined sources
Helixi36 – 5116Combined sources
Beta strandi55 – 617Combined sources
Helixi65 – 7713Combined sources
Beta strandi83 – 886Combined sources
Helixi89 – 913Combined sources
Helixi92 – 965Combined sources
Helixi104 – 1118Combined sources
Helixi117 – 1193Combined sources
Helixi122 – 1276Combined sources
Turni131 – 1333Combined sources
Beta strandi136 – 1449Combined sources
Beta strandi146 – 1516Combined sources
Helixi152 – 1576Combined sources
Helixi169 – 18113Combined sources
Beta strandi185 – 1928Combined sources
Helixi193 – 1975Combined sources
Helixi199 – 2046Combined sources
Helixi211 – 2144Combined sources
Turni215 – 2173Combined sources
Helixi228 – 24316Combined sources
Beta strandi251 – 2533Combined sources
Helixi254 – 2607Combined sources
Beta strandi263 – 2708Combined sources
Helixi271 – 2733Combined sources
Helixi274 – 2807Combined sources
Beta strandi285 – 2895Combined sources
Beta strandi306 – 31510Combined sources
Helixi318 – 33114Combined sources
Helixi334 – 34411Combined sources
Helixi351 – 3599Combined sources
Helixi362 – 3654Combined sources
Helixi367 – 3704Combined sources
Helixi371 – 3766Combined sources
Helixi393 – 40816Combined sources
Helixi414 – 43522Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4AQ4X-ray1.80A24-438[»]
ProteinModelPortaliP0AG80.
SMRiP0AG80. Positions 21-437.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4105BZ7. Bacteria.
COG1653. LUCA.
HOGENOMiHOG000255083.
InParanoidiP0AG80.
KOiK05813.
OMAiESFSAWH.
OrthoDBiEOG69D38D.
PhylomeDBiP0AG80.

Family and domain databases

InterProiIPR006061. SBP_1_CS.
[Graphical view]
PROSITEiPS01037. SBP_BACTERIAL_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P0AG80-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKPLHYTASA LALGLALMGN AQAVTTIPFW HSMEGELGKE VDSLAQRFNA
60 70 80 90 100
ENPDYKIVPT YKGNYEQNLS AGIAAFRTGN APAILQVYEV GTATMMASKA
110 120 130 140 150
IKPVYDVFKE AGIQFDESQF VPTVSGYYSD SKTGHLLSQP FNSSTPVLYY
160 170 180 190 200
NKDAFKKAGL DPEQPPKTWQ DLADYAAKLK ASGMKCGYAS GWQGWIQLEN
210 220 230 240 250
FSAWNGLPFA SKNNGFDGTD AVLEFNKPEQ VKHIAMLEEM NKKGDFSYVG
260 270 280 290 300
RKDESTEKFY NGDCAMTTAS SGSLANIREY AKFNYGVGMM PYDADAKDAP
310 320 330 340 350
QNAIIGGASL WVMQGKDKET YTGVAKFLDF LAKPENAAEW HQKTGYLPIT
360 370 380 390 400
KAAYDLTREQ GFYEKNPGAD TATRQMLNKP PLPFTKGLRL GNMPQIRVIV
410 420 430
DEELESVWTG KKTPQQALDT AVERGNQLLR RFEKSTKS
Length:438
Mass (Da):48,449
Last modified:December 20, 2005 - v1
Checksum:iE0B9B5885B240C8D
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti334 – 3341P → T in CAA31531 (PubMed:3062310).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X13141 Genomic DNA. Translation: CAA31531.1.
U00039 Genomic DNA. Translation: AAB18428.1.
U00096 Genomic DNA. Translation: AAC76478.1.
AP009048 Genomic DNA. Translation: BAE77840.1.
PIRiS47672. JGECGP.
RefSeqiNP_417910.1. NC_000913.3.
WP_000803190.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76478; AAC76478; b3453.
BAE77840; BAE77840; BAE77840.
GeneIDi947962.
KEGGiecj:JW3418.
eco:b3453.
PATRICi32122346. VBIEscCol129921_3550.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X13141 Genomic DNA. Translation: CAA31531.1.
U00039 Genomic DNA. Translation: AAB18428.1.
U00096 Genomic DNA. Translation: AAC76478.1.
AP009048 Genomic DNA. Translation: BAE77840.1.
PIRiS47672. JGECGP.
RefSeqiNP_417910.1. NC_000913.3.
WP_000803190.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4AQ4X-ray1.80A24-438[»]
ProteinModelPortaliP0AG80.
SMRiP0AG80. Positions 21-437.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261118. 154 interactions.
DIPiDIP-35942N.
IntActiP0AG80. 15 interactions.
MINTiMINT-1291422.
STRINGi511145.b3453.

Protein family/group databases

TCDBi3.A.1.1.3. the atp-binding cassette (abc) superfamily.

Proteomic databases

EPDiP0AG80.
PaxDbiP0AG80.
PRIDEiP0AG80.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76478; AAC76478; b3453.
BAE77840; BAE77840; BAE77840.
GeneIDi947962.
KEGGiecj:JW3418.
eco:b3453.
PATRICi32122346. VBIEscCol129921_3550.

Organism-specific databases

EchoBASEiEB1040.
EcoGeneiEG11047. ugpB.

Phylogenomic databases

eggNOGiENOG4105BZ7. Bacteria.
COG1653. LUCA.
HOGENOMiHOG000255083.
InParanoidiP0AG80.
KOiK05813.
OMAiESFSAWH.
OrthoDBiEOG69D38D.
PhylomeDBiP0AG80.

Enzyme and pathway databases

BioCyciEcoCyc:UGPB-MONOMER.
ECOL316407:JW3418-MONOMER.
MetaCyc:UGPB-MONOMER.

Miscellaneous databases

PROiP0AG80.

Family and domain databases

InterProiIPR006061. SBP_1_CS.
[Graphical view]
PROSITEiPS01037. SBP_BACTERIAL_1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Nucleotide sequence of the ugp genes of Escherichia coli K-12: homology to the maltose system."
    Overduin P., Boos W., Tommassen J.
    Mol. Microbiol. 2:767-775(1988) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: K12.
  2. "Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes."
    Sofia H.J., Burland V., Daniels D.L., Plunkett G. III, Blattner F.R.
    Nucleic Acids Res. 22:2576-2586(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiUGPB_ECOLI
AccessioniPrimary (citable) accession number: P0AG80
Secondary accession number(s): P10904, Q2M7B6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 20, 2005
Last sequence update: December 20, 2005
Last modified: March 16, 2016
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.