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P0AG57 (RL6_ECO57) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 45. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
50S ribosomal protein L6
Gene names
Name:rplF
Ordered Locus Names:Z4675, ECs4170
OrganismEscherichia coli O157:H7 [Complete proteome] [HAMAP]
Taxonomic identifier83334 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia

Protein attributes

Sequence length177 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center By similarity. HAMAP MF_01365_B

Subunit structure

Part of the 50S ribosomal subunit By similarity. HAMAP MF_01365_B

Sequence similarities

Belongs to the ribosomal protein L6P family.

Ontologies

Keywords
   LigandRNA-binding
rRNA-binding
   Molecular functionRibonucleoprotein
Ribosomal protein
   PTMAcetylation
   Technical term3D-structure
Complete proteome
Gene Ontology (GO)
   Biological processtranslation

Inferred from electronic annotation. Source: InterPro

   Cellular componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular functionrRNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Initiator methionine11Removed By similarity
Chain2 – 17717650S ribosomal protein L6 HAMAP MF_01365_B
PRO_0000131049

Amino acid modifications

Modified residue441N6-acetyllysine By similarity

Secondary structure

1 ..................... 177
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P0AG57 [UniParc].

Last modified January 23, 2007. Version 2.
Checksum: 946B64E9FA42FE61

FASTA17718,904
        10         20         30         40         50         60 
MSRVAKAPVV VPAGVDVKIN GQVITIKGKN GELTRTLNDA VEVKHADNTL TFGPRDGYAD 

        70         80         90        100        110        120 
GWAQAGTARA LLNSMVIGVT EGFTKKLQLV GVGYRAAVKG NVINLSLGFS HPVDHQLPAG 

       130        140        150        160        170 
ITAECPTQTE IVLKGADKQV IGQVAADLRA YRRPEPYKGK GVRYADEVVR TKEAKKK

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AE005174 Genomic DNA. Translation: AAG58426.1.
BA000007 Genomic DNA. Translation: BAB37593.1.
PIRB91150.
F85995.
RefSeqNP_289866.1. NC_002655.2.
NP_312197.1. NC_002695.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3DF2X-ray3.50G2-177[»]
3DF4X-ray3.50G2-177[»]
ProteinModelPortalP0AG57.
SMRP0AG57. Positions 2-177.
ModBaseSearch...

Protein-protein interaction databases

MINTMINT-1244919.

Proteomic databases

PRIDEP0AG57.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaEBESCT00000028517; EBESCP00000027410; EBESCG00000027568.
EBESCT00000055664; EBESCP00000053492; EBESCG00000054712.
GeneID915978.
958750.
GenomeReviewsGene locus Z4675 in contig AE005174_GR.
Gene locus ECs4170 in contig BA000007_GR.
KEGGece:Z4675.
ecs:ECs4170.
PATRIC18357888. VBIEscCol44059_4111.

Organism-specific databases

CMRSearch...

Phylogenomic databases

GeneTreeEBGT00050000009115.
HOGENOMHBG606796.
OMAALINNMV.
ProtClustDBPRK05498.

Enzyme and pathway databases

BioCycECOL83334:ECS4170-MONOMER.

Family and domain databases

HAMAPMF_01365_B. Ribosomal_L6_B.
[Tree]
InterProIPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR019906. Ribosomal_L6_bac-type.
IPR002358. Ribosomal_L6_CS.
[Graphical view]
Gene3DG3DSA:3.90.930.12. Ribosomal_L6. 2 hits.
KOK02933.
PANTHERPTHR11655:SF6. PTHR11655:SF6. 1 hit.
PTHR11655. Ribosomal_L6. 1 hit.
PfamPF00347. Ribosomal_L6. 2 hits.
[Graphical view]
PIRSFPIRSF002162. Ribosomal_L6. 1 hit.
PRINTSPR00059. RIBOSOMALL6.
SUPFAMSSF56053. Ribosomal_L6. 2 hits.
TIGRFAMsTIGR03654. L6_bact. 1 hit.
PROSITEPS00525. RIBOSOMAL_L6_1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRL6_ECO57
AccessionPrimary (citable) accession number: P0AG57
Secondary accession number(s): P02390
Entry history
Integrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: January 23, 2007
Last modified: January 25, 2012
This is version 45 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

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